Publications

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2017
Gene silencing using multifunctionalized gold nanoparticles for cancer therapy, Fernandes, {Alexandra R. }, and Baptista {Pedro V. } , Methods in Molecular Biology, Volume 1530, United States, p.319–336, (2017) Abstract

Multifunctionalized gold nanobeacons (Au-nanobeacon) combine, in a single and unique platform, targeting, detection and silencing providing an effective impact in clinics boosting cancer theranostics. Here, we describe a nano-integrated platform based on Au-nanobeacons able to detect and inhibit gene expression specifically in cancer cells. The surfaces of gold nanoparticles (AuNPs) are functionalized with targeting peptides to enhance tumor cell recognition and uptake, and with fluorescently labeled antisense DNA hairpin oligonucleotides to detect AuNPs. These oligonucleotides, upon recognition and hybridization to the target, open their structure resulting in separating apart the dye and the quencher allowing the fluorophore to emit light and to monitor the intracellular interactions of AuNPs with the target and the specific silencing of gene expression. This strategy allows inhibiting KRAS gene expression in colorectal carcinoma cell lines with no relevant toxicity for healthy fibroblasts. Importantly, this nano-integrated platform can be easily adapted to hybridize with any specific target thus providing real benefits for the diagnosis and treatment of cancer.

2016
BioCode gold-nanobeacon for the detection of fusion transcripts causing chronic myeloid leukemia, Cordeiro, M., Giestas L., Lima {J. C. }, and Baptista {P. M. V. } , Journal of Nanobiotechnology, may, Volume 14, Number 1, (2016) Abstract

BACKGROUND: Gold-nanobeacons (Au-nanobeacons) have proven to be versatile systems for molecular diagnostics and therapeutic actuators. Here, we present the development and characterization of two gold nanobeacons combined with Förster resonance energy transfer (FRET) based spectral codification for dual mode sequence discrimination. This is the combination of two powerful technologies onto a single nanosystem.RESULTS: We proved this concept to detect the most common fusion sequences associated with the development of chronic myeloid leukemia, e13a2 and e14a2. The detection is based on spectral shift of the donor signal to the acceptor, which allows for corroboration of the hybridization event. The Au-nanobeacon acts as scaffold for detection of the target in a homogenous format whose output capability (i.e. additional layer of information) is potentiated via the spectral codification strategy.CONCLUSIONS: The spectral coded Au-nanobeacons permit the detection of each of the pathogenic fusion sequences, with high specificity towards partial complementary sequences. The proposed BioCode Au-nanobeacon concept provides for a nanoplatform for molecular recognition suitable for cancer diagnostics.

Precision nanomedicine in cancer: how far are we from personalization?, Baptista, {Pedro Viana} , Expert Review of Precision Medicine and Drug Development, may, Volume 1, Number 3, p.227–228, (2016) Abstract
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Non-small cell lung cancer biomarkers and targeted therapy - two faces of the same coin fostered by nanotechnology, Mendes, Rita, Carreira Bárbara, Baptista {Pedro V. }, and Fernandes {Alexandra R. } , Expert Review of Precision Medicine and Drug Development, mar, Volume 1, Number 2, p.155–168, (2016) Abstract

Lung cancer is the leading cause of cancer-related mortality in the world, non-small lung cancer (NSCLC) is the most frequent subtype (85% of the cases). Within this subtype, adenocarcinoma and squamous cell carcinoma are the most frequent. New therapeutic strategies based on targeted delivery of drugs have relied on the use of biomarkers derived from the patients’ molecular profiling. Several biomarkers have been found to be useful for use as targets for precision therapy in NSCLC, such as mutations in the epidermal growth factor receptor, v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog, anaplastic lymphoma kinase, mesenchymal-epithelial transition factor receptor tyrosine kinase, BRAF, c-ros oncogene 1, P53 and phosphatase with tensin homology. Current developments in Nanomedicine have allowed for multifunctional systems capable of delivering therapeutics with increased precision to the target site/tissue, while simultaneously assisting in diagnosis. Here, we review the use of biomarkers in nanotechnology translation in NSCLC management.

A novel mutation in CEBPA gene in a patient with acute myeloid leukemia, Vinhas, Raquel, Tolmatcheva Anna, Canto Rafaela, Ribeiro Patricia, Lourenco Alexandra, {de Sousa} {Aida Botelho}, Baptista {Pedro Miguel Ribeiro Viana}, and de Fernandes {Maria Alexandra Núncio Carvalho Ramos} , Leukemia & Lymphoma, mar, Volume 57, Number 3, p.711–713, (2016) Abstract
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Liposomes as Delivery System of a Sn(IV) Complex for Cancer Therapy, {Luisa Corvo}, M., Mendo {Ana Soraia}, Figueiredo Sara, Gaspar Rogerio, Larguinho Miguel, {Guedes da Silva} Fatima {M. C. }, Baptista {Pedro Miguel Ribeiro Viana}, and de Fernandes {Maria Alexandra Núncio Carvalho Ramos} , Pharmaceutical Research, jun, Volume 33, Number 6, p.1351–1358, (2016) Abstract

Tin complexes demonstrate antiproliferative activities in some case higher than cisplatin, with IC50 at the low micromolar range. We have previously showed that the cyclic trinuclear complex of Sn(IV) bearing an aromatic oximehydroxamic acid group [nBu(2)Sn(L)](3) (L=N,2-dihydroxy-5-[N-hydroxyethanimidoyl]benzamide) (MG85) shows high anti-proliferative activity, induces apoptosis and oxidative stress, and causes destabilization of tubulin microtubules, particularly in colorectal carcinoma cells. Despite the great efficacy towards cancer cells, this complex still shows some cytotoxicity to healthy cells. Targeted delivery of this complex specifically towards cancer cells might foster cancer treatment.MG85 complex was encapsulated into liposomal formulation with and without an active targeting moiety and cancer and healthy cells cytotoxicity was evaluated.Encapsulation of MG85 complex in targeting PEGylated liposomes enhanced colorectal carcinoma (HCT116) cancer cell death when compared to free complex, whilst decreasing cytotoxicity in non-tumor cells. Labeling of liposomes with Rhodamine allowed assessing internalization in cells, which showed significant cell uptake after 6 h of incubation. Cetuximab was used as targeting moiety in the PEGylated liposomes that displayed higher internalization rate in HCT116 cells when compared with non-targeted liposomes, which seems to internalize via active binding of Cetuximab to cells.The proposed formulation open new avenues in the design of innovative transition metal-based vectorization systems that may be further extended to other novel metal complexes towards the improvement of their anti-cancer efficacy, which is usually hampered by solubility issues and/or toxicity to healthy tissues.

Colorimetric assessment of BCR-ABL1 transcripts in clinical samples via gold nanoprobes, Vinhas, Raquel, Correia Claudia, Ribeiro Patricia, Lourenco Alexandra, {de Sousa} {Aida Botelho}, de Fernandes {Maria Alexandra Núncio Carvalho Ramos}, and Baptista {Pedro Miguel Ribeiro Viana} , Analytical and Bioanalytical Chemistry, jul, Volume 408, Number 19, p.5277–5284, (2016) Abstract

Gold nanoparticles functionalized with thiolated oligonucleotides (Au-nanoprobes) have been used in a range of applications for the detection of bioanalytes of interest, from ions to proteins and DNA targets. These detection strategies are based on the unique optical properties of gold nanoparticles, in particular, the intense color that is subject to modulation by modification of the medium dieletric. Au-nanoprobes have been applied for the detection and characterization of specific DNA sequences of interest, namely pathogens and disease biomarkers. Nevertheless, despite its relevance, only a few reports exist on the detection of RNA targets. Among these strategies, the colorimetric detection of DNA has been proven to work for several different targets in controlled samples but demonstration in real clinical bioanalysis has been elusive. Here, we used a colorimetric method based on Au-nanoprobes for the direct detection of the e14a2 BCR-ABL fusion transcript in myeloid leukemia patient samples without the need for retro-transcription. Au-nanoprobes directly assessed total RNA from 38 clinical samples, and results were validated against reverse transcription-nested polymerase chain reaction (RT-nested PCR) and reverse transcription-quantitative polymerase chain reaction (RT-qPCR). The colorimetric Au-nanoprobe assay is a simple yet reliable strategy to scrutinize myeloid leukemia patients at diagnosis and evaluate progression, with obvious advantages in terms of time and cost, particularly in low- to medium-income countries where molecular screening is not routinely feasible.

Editorial: Cancer Nanotheranostics: What Have We Learned So Far?, Conde, João, Tian Furong, {de la Fuente} {Jesus M. }, and Baptista {Pedro Miguel Ribeiro Viana} , Frontiers in Chemistry, jan, Volume 3, (2016) Abstract
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Gold nanoparticles for diagnostics: Advances towards points of care, Cordeiro, Milton, Pedrosa Pedro, Carlos {Fábio Ferreira}, Lopez António, and Baptista {Pedro Viana} , Diagnostics, dec, Volume 6, Number 4, (2016) Abstract

The remarkable physicochemical properties of gold nanoparticles (AuNPs) have prompted developments in the exploration of biomolecular interactions with AuNP-containing systems, in particular for biomedical applications in diagnostics. These systems show great promise in improving sensitivity, ease of operation and portability. Despite this endeavor, most platforms have yet to reach maturity and make their way into clinics or points of care (POC). Here, we present an overview of emerging and available molecular diagnostics using AuNPs for biomedical sensing that are currently being translated to the clinical setting.

Heteroleptic mononuclear compounds of ruthenium(II): Synthesis, structural analyses, in vitro antitumor activity and in vivo toxicity on zebrafish embryos, Lenis-rojas, {O. A. }, Fernandes {A. R. }, Roma-Rodrigues Catarina, Baptista {P. V. }, Marques F., Pérez-Fernández D., Guerra-Varela J., Sánchez-Magraner Lissete, Vázquez-garcía D., Torres López} {M., Fernández-Planells A., and Fernández-Rosas J. , Dalton Transactions, dec, Volume 45, Number 47, p.19127–19140, (2016) Abstract

The limitations of platinum complexes in cancer treatment have motivated the extensive investigation into other metal complexes such as ruthenium. We herein present the synthesis and characterization of a new family of ruthenium compounds 1a–5a with the general formula [Ru(bipy)2L][CF3SO3]2 (bipy = 2,2′-bipyridine; L = bidentate ligand: N,N; N,P; P,P; P,As) which have been characterized by elemental analysis, ES-MS, 1H and 31P–{1H} NMR, FTIR and conductivity measurements. The molecular structures of four Ru(II) complexes were determined by single crystal X-ray diffraction. All compounds displayed moderate cytotoxic activity in vitro against human A2780 ovarian, MCF7 breast and HCT116 colorectal tumor cells. Compound 5a was the most cytotoxic compound against A2780 and MCF7 tumor cells with an IC50 of 4.75 ± 2.82 μM and 20.02 ± 1.46 μM, respectively. The compounds showed no cytotoxic effect on normal human primary fibroblasts but rather considerable selectivity for A2780, MCF7 and HCT116 tumor cells. All compounds induce apoptosis and autophagy in A2780 ovarian carcinoma cells and some nuclear DNA fragmentation. All compounds interact with CT-DNA with intrinsic binding constants in the order 1a > 4a > 2a > 3a > 5a. The observed hyperchromic effect may be due to the electrostatic interaction between positively charged cations and the negatively charged phosphate backbone at the periphery of the double helix-CT-DNA. Interestingly, compound 1a shows a concentration dependent DNA double strand cleavage. In addition in vivo toxicity has been evaluated on zebrafish embryos unveiling the differential toxicity between the compounds, with LC50 ranging from 8.67 mg L−1 for compound 1a to 170.30 mg L−1 for compound 2a.

Infection of human keratinocytes by Streptococcus dysgalactiae subspecies dysgalactiae isolated from milk of the bovine udder, Roma-Rodrigues, Catarina, Alves-Barroco Cynthia, Raposo {Luis R. }, Costa {Mafalda N. }, Fortunato Elvira, Baptista {Pedro Miguel Ribeiro Viana}, de Fernandes {Maria Alexandra Núncio Carvalho Ramos}, and Santos-Sanches Ilda , Microbes And Infection, apr, Volume 18, Number 4, p.290–293, (2016) Abstract

Streptococcus dysgalactiae subsp. dysgalactiae (SDSD) are considered exclusive animal pathogens; however, a putative zoonotic upper limb cellulitis, a prosthetic joint infection and an infective endocarditis were described in humans. To unravel if bovine SDSD isolates are able to infect human cells, the adherence and internalization to human primary keratinocytes of two bovine SDSD strains isolated from milk collected from udder were analyzed. Bacterial adhesion assays and confocal microscopy indicate a high adherence and internalization of SDSD isolates to human cells, suggesting for the first time the ability of bovine isolates to infect human cells. (C) 2015 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

In vitro and in vivo biological characterization of the anti-proliferative potential of a cyclic trinuclear organotin(IV) complex, Martins, Marta, Baptista P. V., Mendo {Ana Soraia}, Correia C., Videira Paula, Rodrigues A. S., Muthukumaran Jayaraman, Santos-Silva Teresa, Silva Ana, {Guedes da Silva} Fatima {M. C. }, Gigante Joana, Duarte Antonio, Gajewska Malgorzata, and Fernandes A. R. , Molecular Biosystems, Volume 12, Number 3, p.1015–1023, (2016) Abstract

Identification of novel molecules that can selectively inhibit the growth of tumor cells, avoid causing side effects to patients and/or intrinsic or acquired resistance, usually associated with common chemotherapeutic agents, is of utmost importance. Organometallic compounds have gained importance in oncologic chemotherapy, such as organotin(IV) complexes. In this study, we assessed the anti-tumor activity of the cyclic trinuclear organotin(IV) complex with an aromatic oximehydroxamic acid group [nBu(2)Sn(L)](3)(H2L = N,2-dihydroxy-5-[N-hydroxyethanimidoyl]benzamide) - MG85 - and provided further characterization of its biological targets. We have previously shown the high anti-proliferative activity of this complex against human colorectal and hepatocellular carcinoma cell lines and lower cytotoxicity in neonatal non-tumor fibroblasts. MG85 induces tumor cell apoptosis and down-regulation of proteins related to tubulin dynamics (TCTP and COF1). Further characterization included the: (i) evaluation of interference in the cell cycle progression, including the expression of critical genes; (ii) affinity to DNA and the corresponding mode of binding; (iii) genotoxic potential in cells with deficient DNA repair pathways; and (iv) in vivo tumor reduction efficiency using mouse colorectal carcinoma xenografts.

Peptide-coated gold nanoparticles for modulation of angiogenesis in vivo, Roma-Rodrigues, Catarina, Heuer-Jungemann Amelie, de Fernandes {Maria Alexandra Núncio Carvalho Ramos}, Kanaras {Antonios G. }, and Baptista {Pedro Miguel Ribeiro Viana} , International journal of nanomedicine, Volume 11, p.2633–2639, (2016) Abstract

In this work, peptides designed to selectively interact with cellular receptors involved in the regulation of angiogenesis were anchored to oligo-ethylene glycol-capped gold nanoparticles (AuNPs) and used to evaluate the modulation of vascular development using an ex ovo chick chorioallantoic membrane assay. These nanoparticles alter the balance between naturally secreted pro- and antiangiogenic factors, under various biological conditions, without causing toxicity. Exposure of chorioallantoic membranes to AuNP-peptide activators of angiogenesis accelerated the formation of new arterioles when compared to scrambled peptide-coated nanoparticles. On the other hand, antiangiogenic AuNP-peptide conjugates were able to selectively inhibit angiogenesis in vivo. We demonstrated that AuNP vectorization is crucial for enhancing the effect of active peptides. Our data showed for the first time the effective control of activation or inhibition of blood vessel formation in chick embryo via AuNP-based formulations suitable for the selective modulation of angiogenesis, which is of paramount importance in applications where promotion of vascular growth is desirable (eg, wound healing) or ought to be contravened, as in cancer development.

Synthesis, characterization, thermal properties and antiproliferative potential of copper(II) 4 '-phenylterpyridine compounds, Ma, Zhen, Zhang Bian, {Guedes da Silva} Fátima {M. C. }, Silva Joana, Mendo {Ana Soraia}, Baptista {Pedro Viana}, Fernandes {Alexandra R. }, and Pombeiro {Armando J. L. } , Dalton Transactions, Volume 45, Number 12, p.5339–5355, (2016) Abstract

Reactions between 4'-phenyl-terpyridine (L) and several Cu(II) salts (p-toluenesulfonate, benzoate and o-, m-or p-hydroxybenzoate) led to the formation of [Cu(p-SO3C6H4CH3)L(H2O)(2)](p-SO3C6H4CH3) (1), [Cu(OCOPh)(2)L] (2), [Cu(o-OCOC6H4OH)(2)L] (3), [Cu(m-OCOC6H4OH)(2)L]center dot MeOH (4 center dot MeOH) and [Cu(pOCOC(6)H(4)OH)(2)L]center dot 2H(2)O (5 center dot 2H2O), which were characterized by elemental and TG-DTA analyses, ESI-MS, IR spectroscopy and single crystal X-ray diffraction, as well as by conductivimetry. In all structures the Cu atoms present N3O3 octahedral coordination geometries, which, in 2-5, are highly distorted as a result of the chelating-bidentate mode of one of the carboxylate ligands. Intermolecular pi...pi stacking interactions could also be found in 2-5 (in the 3.569-3.651 angstrom range and involving solely the pyridyl rings). Mediumstrong hydrogen bond interactions lead to infinite 1D chains (in 1 and 4) and to an infinite 2D network (in 5). Compounds 1 and 4 show high in vitro cytotoxicity towards HCT116 colorectal carcinoma and HepG2 hepatocellular carcinoma cell lines. The antiproliferative potential of compound 1 is due to an increase of the apoptotic process that was confirmed by Hoechst staining, flow cytometry and RT-qPCR. All compounds able to non-covalently intercalate the DNA helix and induce in vitro pDNA double-strand breaks in the absence of H2O2. Concerning compound 1, the hydroxyl radical and singlet oxygen do not appear to be involved in the pDNA cleavage process and the fact that this cleavage also occurs in the absence of molecular oxygen points to a hydrolytic mechanism of cleavage.

2015
Characterization of antiproliferative potential and biological targets of a copper compound containing 4'-phenyl terpyridine, Mendo, {Ana Soraia}, Figueiredo Sara, Roma-Rodrigues Catarina, Videira {Paula A. }, Ma Zhen, Diniz Mario, Larguinho Miguel, Costa P. M., Lima {Joao C. }, Pombeiro {Armando J. L. }, Baptista {Pedro V. }, and Fernandes {Alexandra R. } , JBIC Journal of Biological Inorganic Chemistry, sep, Volume 20, Number 6, p.935–948, (2015) Abstract

Several copper complexes have been assessed as anti-tumor agents against cancer cells. In this work, a copper compound [Cu(H2O){OS(CH3)(2)}L](NO3)(2) incorporating the ligand 4'-phenyl-terpyridine antiproliferative activity against human colorectal, hepatocellular carcinomas and breast adenocarcinoma cell lines was determined, demonstrating high cytotoxicity. The compound is able to induce apoptosis and a slight delay in cancer cell cycle progression, probably by its interaction with DNA and induction of double-strand pDNA cleavage, which is enhanced by oxidative mechanisms. Moreover, proteomic studies indicate that the compound induces alterations in proteins involved in cytoskeleton maintenance, cell cycle progression and apoptosis, corroborating its antiproliferative potential.

Gold nanoparticles for DNA/RNA-based diagnostics, Franco, Ricardo, Pedrosa Pedro, Carlos {Fábio Ferreira}, Veigas Bruno, and Baptista {Pedro Miguel Ribeiro Viana} , Handbook of Nanoparticles, sep, Switzerland, p.1339–1370, (2015) Abstract

The remarkable physicochemical properties of gold nanoparticles (AuNPs) have prompted development in exploring biomolecular interactions with AuNPscontaining systems, pursuing biomedical applications in diagnostics. Among these applications, AuNPs have been remarkably useful for the development of DNA/RNA detection and characterization systems for diagnostics, including systems suitable for point of need. Here, emphasis will be on available molecular detection schemes of relevant pathogens and their molecular characterization, genomic sequences associated with medical conditions (including cancer), mutation and polymorphism identification, and the quantification of gene expression.

Heterocyclic anticancer compounds: Recent advances and the paradigm shift towards the use of nanomedicine's tool Box, Martins, Pedro, Jesus Joao, Santos Sofia, Raposo {Luis R. }, Roma-Rodrigues Catarina, Baptista {Pedro Miguel Ribeiro Viana}, and de Fernandes {Maria Alexandra Núncio Carvalho Ramos} , Molecules, sep, Volume 20, Number 9, p.16852–16891, (2015) Abstract

The majority of heterocycle compounds and typically common heterocycle fragments present in most pharmaceuticals currently marketed, alongside with their intrinsic versatility and unique physicochemical properties, have poised them as true cornerstones of medicinal chemistry. Apart from the already marketed drugs, there are many other being investigated for their promising activity against several malignancies. In particular, anticancer research has been capitalizing on the intrinsic versatility and dynamic core scaffold of these compounds. Nevertheless, as for any other promising anticancer drugs, heterocyclic compounds do not come without shortcomings. In this review, we provide for a concise overview of heterocyclic active compounds and families and their main applications in medicine. We shall focus on those suitable for cancer therapy while simultaneously addressing main biochemical modes of action, biological targets, structure-activity relationships as well as intrinsic limitation issues in the use of these compounds. Finally, considering the advent of nanotechnology for effective selective targeting of drugs, we shall discuss fundamental aspects and considerations on nanovectorization of such compounds that may improve pharmacokinetic/pharmacodynamic properties of heterocycles.

Nanoparticles for mass spectrometry applications, Larguinho, Miguel, Capelo {José Luís}, and Baptista {Pedro V. } , Handbook of Nanoparticles, sep, Switzerland, p.1371–1396, (2015) Abstract

Nanotechnology has led to the development of new and improved materials, and particular emphasis has been directed toward nanoparticles and their multiple bio-applications. Nanoparticles exhibit size-, shape-, and compositiondependent properties, e.g., surface plasmon resonance and photothermal properties, which may potentially enhance laser desorption/ionization systems for mass spectrometry-based analysis of biomolecules. Also, nanoparticles possess high surface to volume ratio that can be easily derivatized with a wide range of ligands with different functional groups. Surface modification makes nanoparticles advantageous for sample preparation procedures prior to detection by mass spectrometry. Moreover, it allows the synthesis of affinity probes, which promotes interactions between nanoparticles and analytes, greatly enhancing the ionization efficiency. This chapter provides a comprehensive discussion on the use of nanoparticles for mass spectrometry-related applications, from sample preparation methodologies to ionization surfaces. Applications will focus on nanoparticle size, composition, and functionalization, as a comparative point of view on optimal characteristics toward maximization of bioassay efficiency.

Gold nanoprobe-based non-crosslinking hybridization for molecular diagnostics, Larguinho, Miguel, Canto Rafaela, Cordeiro Milton, Pedrosa Pedro, Fortuna Andreia, Vinhas Raquel, and Baptista {Pedro Miguel Ribeiro Viana} , Expert Review Of Molecular Diagnostics, oct, Volume 15, Number 10, p.1355–1368, (2015) Abstract

Non-crosslinking (NCL) approaches using DNA-modified gold nanoparticles for molecular detection constitute powerful tools with potential implications in clinical diagnostics and tailored medicine. From detection of pathogenic agents to identification of specific point mutations associated with health conditions, these methods have shown remarkable versatility and simplicity. Herein, the NCL hybridization assay is broken down to the fundamentals behind its assembly and detection principle. Gold nanoparticle synthesis and derivatization is addressed, emphasizing optimal size homogeneity and conditions for maximum surface coverage, with direct implications in downstream detection. The detection principle is discussed and the advantages and drawbacks of different NCL approaches are discussed. Finally, NCL-based applications for molecular detection of clinically relevant loci and potential integration into more complex biosensing platforms, projecting miniaturization and portability are addressed.

Scalable approach for the production of functional DNA based gold nanoprobes, Veigas, Bruno, Portugal Carla, Valério Rita, Fortunato Elvira, Crespo {João G. }, and Baptista Pedro , Journal of Membrane Science, oct, Volume 492, p.528–535, (2015) Abstract

Nanoparticle based systems, in particular gold nanoparticles (AuNPs), provide for simple calorimetric detection of molecular biomarkers, such as DNA, RNA. These systems rely on the functionalization of AuNPs with ssDNA oligonucleotides requiring strenuous laboratory centrifugation steps not compatible with industrial scale up. Here, we demonstrate the potential of dia-ultrafiltration for purification of Au-nanoprobes. We show that dia-ultrafiltration can be regarded as better alternative to centrifugation, allowing for a less intensive sample manipulation, easier transposable to the industrial scale. The purification of AuNPs was performed by dia-ultrafiltration using membranes of regenerated cellulose with a nominal molecular weight cut-off (MWCO) of 10 kDa and a processing strategy which combined subsequent AuNPs cleaning and concentration steps. instead of the permeation flux decline typically found in ultrafiltration processes operated under concentration modes, purification of Au-nanoprobes by dia-ultrafiltration was followed by a subtle increase of the permeation fluxes. This effect was ascribed to improved external mass transfer conditions near the membrane surface, prompted by the decrease of the overall solute concentration in the retentate over the process Lime. This strategy allowed for the total retention of the AuNPS, yielding nanoprobes capable of higher signal to noise ratios. Proof-of-concept was directed at the synthesis of Au-nanoprobes for identification of members of the Mycobacterium tuberculosis complex that cause tuberculosis in humans. (C) 2015 Elsevier B.V. All rights reserved.

Significance of the balance between intracellular glutathione and polyethylene glycol for successful release of small interfering RNA from gold nanoparticles, McCully, Mark, Hernandez Yulan, Conde João, Baptista {Pedro Miguel Ribeiro Viana}, {de la Fuente} {Jesus M. }, Hursthouse Andrew, Stirling David, and Berry {Catherine C. } , Nano Research, oct, Volume 8, Number 10, p.3281–3292, (2015) Abstract

The therapeutic promise of small interfering RNAs (siRNAs) for specific gene silencing is dependent on the successful delivery of functional siRNAs to the cytoplasm. Their conjugation to an established delivery platform, such as gold nanoparticles, offers tremendous potential for treating diseases and advancing our understanding of cellular processes. Their success or failure is dependent on both the uptake of the nanoparticles into the cells and subsequent intracellular release of the functional siRNA. In this study, utilizing gold nanoparticle siRNA-mediated delivery against C-MYC, we aimed to determine if we could achieve knockdown in a cancer cell line with low levels of intracellular glutathione, and determine the influence, if any, of polyethylene glycol (PEG) ligand density on knockdown, with a view to determining the optimal nanoparticle design to achieve C-MYC knockdown. We demonstrate that, regardless of the PEG density, knockdown in cells with relatively low glutathione levels can be achieved, as well as the possible effect of steric hindrance of PEG on the availability of the siRNA for cleavage in the intracellular environment. Gold nanoparticle uptake was demonstrated via transmission electron microscopy and mass spectroscopy, while knockdown was determined at the protein and physiological levels (cells in S-phase) by in-cell westerns and BrdU incorporation, respectively.

Field Effect Sensors for Nucleic Acid Detection: Recent Advances and Future Perspectives, Veigas, Bruno, Baptista {Pedro Miguel Ribeiro Viana}, and Fortunato Elvira , Sensors, may, Volume 15, Number 5, p.10380–10398, (2015) Abstract

In the last decade the use of field-effect-based devices has become a basic structural element in a new generation of biosensors that allow label-free DNA analysis. In particular, ion sensitive field effect transistors (FET) are the basis for the development of radical new approaches for the specific detection and characterization of DNA due to FETs' greater signal-to-noise ratio, fast measurement capabilities, and possibility to be included in portable instrumentation. Reliable molecular characterization of DNA and/or RNA is vital for disease diagnostics and to follow up alterations in gene expression profiles. FET biosensors may become a relevant tool for molecular diagnostics and at point-of-care. The development of these devices and strategies should be carefully designed, as biomolecular recognition and detection events must occur within the Debye length. This limitation is sometimes considered to be fundamental for FET devices and considerable efforts have been made to develop better architectures. Herein we review the use of field effect sensors for nucleic acid detection strategiesfrom production and functionalization to integration in molecular diagnostics platforms, with special focus on those that have made their way into the diagnostics lab.

Gold and Silver Nanoparticles for Diagnostics of Infection, Pedrosa, Pedro, and Baptista {Pedro V. } , Nanotechnology in Diagnosis, Treatment and Prophylaxis of Infectious Diseases, may, Netherlands, p.1–18, (2015) Abstract

The use of noble metal nanoparticles (NPs), particularly gold and silver, in biomolecular applications has surged, ranging from innovative strategies for molecular diagnostics to radical new ways of treatment. Taking advantage of the particular optical-chemical characteristics of these metal NPs, every year new methods of molecular diagnostics of infectious diseases are reported providing higher analytical capability, sensitivity, and throughput at lower costs and with the possibility to be used where needed. Gold and silver NPs, or a combination of both, possess amazing optical/spectral properties, such as the intense localized surface plasmon resonance that, together with the ease of surface modification and functionalization with biomolecules capable of specific molecular recognition, have provided new strategies for molecular analysis, extending the detection limit of current nucleic acid and protein-based assays.This chapter focuses on the methods used for diagnostic of infectious diseases that take advantage of noble metal NPs. It discusses their use in biomolecular recognition and their most promising approaches, and it compares their advantages and disadvantages.

Gold nanoparticle-based theranostics: disease diagnostics and treatment using a single nanomaterial, Vinhas, Raquel, Cordeiro Milton, Carlos {Fábio Ferreira}, Mendo Soraia, Fernandes {Alexandra R. }, Figueiredo Sara, and Baptista {Pedro V. } , Nanobiosensors in Disease Diagnosis, may, Volume 4, p.11–23, (2015) Abstract

Nanotheranostics takes advantage of nanotechnology-based systems in order to diagnose and treat a specific disease. This approach is particularly relevant for personalized medicine, allowing the detection of a disease at an early stage, to direct a suitable therapy toward the target tissue based on the molecular profile of the altered phenotype, subsequently facilitating disease monitoring and following treatment. A tailored strategy also enables to reduce the off-target effects associated with universal treatments and improve the safety profile of a given treatment. The unique optical properties of gold nanoparticles, their ease of surface modification, and high surface-to-volume ratio have made them central players in this area. By combining imaging, targeting, and therapeutic agents in a single vehicle, these nanoconjugates are (ought to be) an important tool in the clinics. In this review, the multifunctionality of gold nanoparticles as theranostics agents will be highlighted, as well as the requirements before the translation of these nanoplatforms into routine clinical practice.

Single Nucleotide Polymorphism Detection Using Gold Nanoprobes and Bio-Microfluidic Platform With Embedded Microlenses, Bernacka-Wojcik, Iwona, Águas Hugo, Carlos {Fabio Ferreira}, Lopes Paulo, Wojcik {Pawel Jerzy}, Costa {Mafalda Nascimento}, Veigas Bruno, Igreja Rui, Fortunato Elvira, Baptista Pedro, and Martins Rodrigo , Biotechnology and Bioengineering, jun, Volume 112, Number 6, p.1210–1219, (2015) Abstract

The use of microfluidics platforms combined with the optimal optical properties of gold nanopartides has found plenty of application in molecular biosensing. This paper describes a biotnicrofluidic platform coupled to a non-cross-linking colorimetric gold nanoprobe assay to detect a single nucleotide polymorphism associated with increased risk of obesity fat-mass and obesity-associated (FTO) rs9939609 (Carlos et al., 2014). The system enabled significant discrimination between positive and negative assays using a target DNA concentration of 5 ng/mu l below the limit of detection of the conventionally used microplate reader (i.e., 15 ng/mu l) with 10 times lower solution volume (i.e., 3 mu l.). A set of optimization of our previously reported bio-microfluidic platform (Bemacka-Wojcik et al., 2013) resulted in a 160% improvement of colorimetric analysis results. Incorporation of planar microlenses increased 6 times signal-to-loss ratio reaching the output optical fiber improving by 34% the colorimetric analysis of gold nanopartides, while the implementation of an optoelectronic acquisition system yielded increased accuracy and reduced noise. The microfluidic chip was also integrated with a miniature fiber spectrometer to analyze the assays' cobrimetric changes and also the LEDs transmission spectra when illuminating through various solutions. Furthermore, by coupling an optical micmscope to a digital camera with a long exposure time (30s), we could visualise the different scatter intensities of gold nanoparticles within channels following salt addition. These intensities correlate well to the expected difference in aggregation between FTO positive (none to small aggregates) and negative samples (large aggregates). (C) 2015 Wiley Periodicals, Inc.

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