Publications

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Book Chapter
Pedrosa, Pedro, and Pedro Viana Baptista. "Gold and silver nanoparticles for diagnostics of infection." In Nanotechnology in Diagnosis, Treatment and Prophylaxis of Infectious Diseases, edited by Mahendra Rai and Kateryna Kon, 1-18. Elsevier, 2015. Abstract

Nanotechnology in Diagnosis, Treatment and Prophylaxis of Infectious Diseases delivers comprehensive coverage of the application of nanotechnology to pressing problems in infectious disease.
This text equips readers with cutting-edge knowledge of promising developments and future prospects in nanotechnology, paying special attention to microbes that are now resistant to conventional antibiotics, a concerning problem in modern medicine.
Readers will find a thorough discussion of this new approach to infectious disease treatment, including the reasons nanotechnology presents a promising avenue for the diagnosis, treatment, and prophylaxis of infectious diseases.

Franco, Ricardo, Pedro Pedrosa, Fábio Ferreira Carlos, Bruno Veigas, and Pedro Viana Baptista. "Gold Nanoparticles for DNA/RNA-Based Diagnostics." In Handbook of Nanoparticles, 1-25. Berlin: Springer, 2015. Abstract

The remarkable physicochemical properties of gold nanoparticles (AuNPs) have prompted development
in exploring biomolecular interactions with AuNPs-containing systems, pursuing biomedical applications
in diagnostics. Among these applications, AuNPs have been remarkably useful for the development of
DNA/RNA detection and characterization systems for diagnostics, including systems suitable for point of
need. Here, emphasis will be on available molecular detection schemes of relevant pathogens and their
molecular characterization, genomic sequences associated with medical conditions (including cancer),
mutation and polymorphism identification, and the quantification of gene expression.

Vinhas, Raquel, Alexandra R. Fernandes, and Pedro V. Baptista. "Molecular Diagnostics of Chronic Myeloid Leukemia - precision medicine via gold nanoparticles." In In CDx and precision medicine for hematologic malignancies, edited by Il-Jin Kim, 205-230. PanStanford Publishing, 2018.
Veigas, Bruno, Gonçalo Doria, and Pedro V. Baptista. "Nanodiagnostics for tuberculosis." In Understanding Tuberculosis - Global Experiences and Innovative Approaches to the Diagnosis, edited by Pere-Joan Cardona. InTech, 2011.
Larguinho, Miguel, Sara Figueiredo, Ana Cordeiro, Fábio Ferreira Carlos, Milton Cordeiro, Pedro Pedrosa, and Pedro Viana Baptista. "Nanoparticles for Diagnostics and Imaging." In Frontiers in Nanomedicine, edited by Maria Luisa Bondì Bondì, Chiara Botto and Erika Amore, 3-46. Bentham Science, 2015. Abstractsample.pdf

Nanoparticles possess unique optical and physic-chemical properties that may potentiate applications in biomedicine, in particular in diagnostics, therapy and imaging. Advances on biomolecular diagnostics strategies have greatly focused on single molecule detection and characterization of DNA, RNA or proteins through improved nanoparticle-based platforms. Nanoparticles improve analytical capability when compared to traditional techniques with high resolution and medium-high throughput. Also, particular interest has been directed at SNP detection, gene expression profiles and biomarker characterization through colorimetric, spectrometric or electrochemical strategies.
Molecular imaging has also benefited from the introduction of nanoparticles in standard techniques towards non-invasive imaging procedures that can be used to highlight regions of interest, allowing the characterization of biological processes at the cellular and/or molecular level. Several imaging modalities are associated with low sensitivity, an issue that can be tackled by the use of probes, e.g. contrast agents for X-ray and magnetic resonance imaging, radiolabelled molecules for nuclear medicine. Furthermore, nanoparticles can be used as vehicles that deliver specifically these contrast agents, leading to overcome the limitations of conventional modalities.
This chapter will discuss the use of nanoparticles in biomolecular recognition and imaging applications, focusing those already being translated into clinical settings. Current knowledge will be addressed as well as its evolution towards the future of nanoparticle-based biomedical applications.

Baptista, Pedro V., Gonçalo Doria, Pedro Quaresma, Miguel Cavadas, Cristina S. Neves, Inês Gomes, Peter Eaton, Eulália Pereira, and Ricardo Franco. "Nanoparticles in molecular diagnostics. Nanoparticles in Translational Science and Medicine." In Progress in Molecular Biology and Translational Science, edited by A. Villaverde and Michael P. Conn. Elsevier, 2012.
Conference Proceedings
Baptista, Pedro V., Gonçalo Doria, and João Conde. Alloy metal nanoparticles for multicolor cancer diagnostics In Colloidal Quantum Dots/Nanocrystals for Biomedical Applications VI. San Francisco, CA, USA: Proc. of SPIE Vol. 7909, SPIE 2011, 2011.
Doria, G., J. T. Dias, M. Larguinho, E. Pereira, R. Franco, and P. Baptista. AuAg-alloy-nanoprobes for Specific Nucleic Acid Detection In NSTI-Nanotech 2010. Anaheim, CA, 2010.
Baptista, P., G. Doria, A. Matias, L. Osorio, E. Pereira, and F. Ricardo. Direct detection of mutations/SNPs using DNA-derivatised gold nanoparticles In Congress of Clinical Chemistry and Laboratory Medicine. Jena, Germany, 2005.
Koziol-Montewka, M., J. Paluch-Oles, and P. Baptista. Gold nanoparticle probe-based diagnostic system for rapid and sensitive detection of Mycobacterium tuberculosis In Congress of Clinical Microbiology and Infectious Diseases. Nice, France, 2006.
Osorio-Almeida, L., I. Gonçalves, A. Raimundo, and P. Baptista. Is the IVS2 region of the human Agamma globin gene an important regulatory region? In 10th International Congress of Human Genetics. Vienna, Austria, 2001.
Journal Article
Conde, João, Alfredo Ambrosone, Yulán Hernandez, Furong Tian, Mark McCully, Catherine C. Berry, Pedro V. Baptista, and Claudia T. " 15 years on siRNA delivery: Beyond the State-of-the-Art on inorganic nanoparticles for RNAi therapeutics." NANO TODAY In Press (2015). Abstract

RNAi has always captivated scientists due to its tremendous power to modulate the phenotype of living organisms. This natural and powerful biological mechanism can now be harnessed to down-regulate specific gene expression in diseased cells; opening up endless opportunities. Since most of the conventional siRNA delivery methods are limited by a narrow therapeutic index and significant side and off-target effects, we are now in the dawn of a new age in gene therapy driven by nanotechnology vehicles for RNAi therapeutics. Here, we outlook the "do's and dont's" of the inorganic RNAi nanomaterials developed in the last 15 years and the different strategies employed are compared and scrutinized, offering important suggestions for the next 15.

Giestas, Letícia, João Carlos Lima, and Pedro V. Baptista. " Coupling single base extension to a spectral codification tool for increased throughput screening." J. Biotechnol. 154 (2011): 199-204.
Bernacka-Wojcik, Iwona, Susana Ribeiro, Pawel Jerzy Wojcik, Pedro Urbano Alves, Tito Busani, Elvira Fortunato, Pedro Viana Baptista, José António Covas, Hugo Águas, Loic Hilliou, and Rodrigo Martins. " Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length." RSC ADVANCES 4 (2014). AbstractWebsite

This paper presents the performance of a passive planar rhombic micromixer with diamond-shaped obstacles and a rectangular contraction between the rhombi. The device was experimentally optimized using water for high mixing efficiency and a low pressure drop over a wide range of Reynolds numbers (Re = 0.1–117.6) by varying geometrical parameters such as the number of rhombi, the distance between obstacles and the contraction width. Due to the large amount of data generated, statistical methods were used to facilitate and improve the results of the analysis. The results revealed a rank of factors influencing mixing efficiency: Reynolds number > number of rhombi > contraction width > inter-obstacles distance. The pressure drop measured after three rhombi depends mainly on Re and inter-obstacle distance. The resulting optimum geometry for the low Re regime has a contraction width of 101 μm and inter-obstacles distance of 93 μm, while for the high Re regime a contraction width of 400 μm and inter-obstacle distance of 121 μm are more appropriate. These mixers enabled 80% mixing efficiency creating a pressure drop of 6.0 Pa at Re = 0.1 and 5.1 × 104 Pa at Re = 117.6, with a mixer length of 2.5 mm. To the authors' knowledge, the developed mixer is one of the shortest planar passive micromixers reported to date.

Baptista, Pedro Viana. "3h Gold nanobeacons: a potential nanotheranostics platform." Nanomedicine 9 (2014): 2247-2250. Abstract

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Carlos, F. F., B. Veigas, A. S. Matias, G. Doria, O. Flores, and P. V. Baptista. "Allele specific LAMP- gold nanoparticle for characterization of single nucleotide polymorphisms." Biotechnol Rep (Amst) 16 (2017): 21-25. AbstractWebsite

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Martins, Rodrigo, Pedro Baptista, Leandro Raniero, Gonçalo Doria, Leonardo Silva, Ricardo Franco, and Elvira Fortunato. "Amorphous/nanocrystalline silicon biosensor for the specific identification of unamplified nucleic acid sequences using gold nanoparticle probes." Appl. Phys. Lett. 90 (2007).
Cabral, Rita M., and Pedro V. Baptista. "Anti-cancer precision theranostics: a focus on multifunctional gold nanoparticles." Expert Review of Molecular Diagnostics 14 (2014): 1041-1052. Abstract

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Veigas, B., A. Matias, T. Calmeiro, E. Fortunato, A. R. Fernandes, and P. V. Baptista. "Antibody modified gold nanoparticles for fast colorimetric screening of rheumatoid arthritis." Analyst 144 (2019): 3613-3619. AbstractWebsite

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Conde, Joao, Chenchen Bao, Daxiang Cui, Pedro V. Baptista, and Furong Tian. "Antibody-drug gold nanoantennas with Raman spectroscopic fingerprints for in vivo tumour theranostics." Journal of Controlled Release 183 (2014): 87-93. Abstract

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Kordestani, N., H. A. Rudbari, A. R. Fernandes, L. R. Raposo, P. V. Baptista, D. Ferreira, G. Bruno, G. Bella, R. Scopelliti, J. D. Braun, D. E. Herbert, and O. Blacque. "Antiproliferative Activities of Diimine-Based Mixed Ligand Copper(II) Complexes." ACS Comb Sci 22 (2020): 89-99. AbstractWebsite

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Sutradhar, M., E. C. B. A. Alegria, F. Ferretti, L. R. Raposo, M. F. C. Guedes da Silva, P. V. Baptista, A. R. Fernandes, and A. J. L. Pombeiro. "Antiproliferative activity of heterometallic sodium and potassium-dioxidovanadium(V) polymers." J Inorg Biochem 200 (2019): 110811. AbstractWebsite

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Carlos, F. F., J. Silva-Nunes, O. Flores, M. Brito, G. Doria, L. Veiga, and P. V. Baptista. "Association of FTO and PPARG polymorphisms with obesity in Portuguese women." Diabetes Metab Syndr Obes 6 (2013): 241-5. AbstractWebsite

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Carlos, Fabio Ferreira, Jose Silva-Nunes, Orfeu Flores, Miguel Brito, Goncalo Doria, Luisa Veiga, and Pedro Viana Baptista. "Association of FTO and PPARG polymorphisms with obesity in Portuguese women." Diabetes, metabolic syndrome and obesity : targets and therapy 6 (2013): 241-5. Abstract

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Veigas, B., D. Machado, J. Perdigão, I. Portugal, I. Couto, M. Viveiros, and P. V. Baptista. "Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis." Nanotechnology 21 (2010): 415101. AbstractWebsite

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