Publications

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2020
Oliveira, B., B. Veigas, A. R. Fernandes, H. Águas, R. Martins, E. Fortunato, and P. V. Baptista. "Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers." Sensors (Basel) 20 (2020). AbstractWebsite

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Beola, L., L. Asín, C. Roma-Rodrigues, Y. Fernández-Afonso, R. M. Fratila, D. Serantes, S. Ruta, R. W. Chantrell, A. R. Fernandes, P. V. Baptista, J. M. de la Fuente, V. Grazú, and L. Gutiérrez. "The Intracellular Number of Magnetic Nanoparticles Modulates the Apoptotic Death Pathway after Magnetic Hyperthermia Treatment." ACS Appl Mater Interfaces 12 (2020): 43474-43487. AbstractWebsite

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Alves-Barroco, C., L. Rivas-García, A. R. Fernandes, and P. V. Baptista. "Tackling Multidrug Resistance in Streptococci - From Novel Biotherapeutic Strategies to Nanomedicines." Front Microbiol 11 (2020): 579916. AbstractWebsite

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2019
Sutradhar, M., E. C. B. A. Alegria, F. Ferretti, L. R. Raposo, M. F. C. Guedes da Silva, P. V. Baptista, A. R. Fernandes, and A. J. L. Pombeiro. "Antiproliferative activity of heterometallic sodium and potassium-dioxidovanadium(V) polymers." J Inorg Biochem 200 (2019): 110811. AbstractWebsite

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Kourmentza, C., D. Araujo, C. Sevrin, C. Roma-Rodriques, J. Lia Ferreira, F. Freitas, M. Dionisio, P. V. Baptista, A. R. Fernandes, C. Grandfils, and M. A. M. Reis. "Occurrence of non-toxic bioemulsifiers during polyhydroxyalkanoate production by Pseudomonas strains valorizing crude glycerol by-product." Bioresour Technol 281 (2019): 31-40. AbstractWebsite

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Marques, A., B. Veigas, A. Araújo, B. Pagará, P. V. Baptista, H. Águas, R. Martins, and E. Fortunato. "Paper-Based SERS Platform for One-Step Screening of Tetracycline in Milk." Sci Rep 9 (2019): 17922. AbstractWebsite

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Almeida, J., C. Roma-Rodrigues, A. G. Mahmoud, M. F. C. Guedes da Silva, A. J. L. Pombeiro, D.RS L. M. Martins, P. V. Baptista, and A. R. Fernandes. "Structural characterization and biological properties of silver(I) tris(pyrazolyl)methane sulfonate." J Inorg Biochem 199 (2019): 110789. AbstractWebsite

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2018
Ribeiro, A. P. C., S. Anbu, E. C. B. A. Alegria, A. R. Fernandes, P. V. Baptista, R. Mendes, A. S. Matias, M. Mendes, M. F. C. Guedes da Silva, and A. J. L. Pombeiro. "Evaluation of cell toxicity and DNA and protein binding of green synthesized silver nanoparticles." Biomedicine & Pharmacotherapy 101 (2018): 137-144. AbstractWebsite

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Alves, Pedro Urbano, Raquel Vinhas, Alexandra R. Fernandes, Semra Zuhal Birol, Levent Trabzon, Iwona Bernacka-Wojcik, Rui Igreja, Paulo Lopes, Pedro Viana Baptista, Hugo Águas, Elvira Fortunato, and Rodrigo Martins. "Multifunctional microfluidic chip for optical nanoprobe based RNA detection – application to Chronic Myeloid Leukemia." Scientific Reports 8 (2018): 381. AbstractWebsite

Many diseases have their treatment options narrowed and end up being fatal if detected during later stages. As a consequence, point-of-care devices have an increasing importance for routine screening applications in the health sector due to their portability, fast analyses and decreased cost. For that purpose, a multifunctional chip was developed and tested using gold nanoprobes to perform RNA optical detection inside a microfluidic chip without the need of molecular amplification steps. As a proof-of-concept, this device was used for the rapid detection of chronic myeloid leukemia, a hemato-oncological disease that would benefit from early stage diagnostics and screening tests. The chip passively mixed target RNA from samples, gold nanoprobes and saline solution to infer a result from their final colorimetric properties. An optical fiber network was used to evaluate its transmitted spectra inside the chip. Trials provided accurate output results within 3 min, yielding signal-to-noise ratios up to 9 dB. When compared to actual state-of-art screening techniques of chronic myeloid leukemia, these results were, at microscale, at least 10 times faster than the reported detection methods for chronic myeloid leukemia. Concerning point-of-care applications, this work paves the way for other new and more complex versions of optical based genosensors.

Restani, Rita B., Rita F. Pires, Anna Tolmatcheva, Rita Cabral, V. Baptista, Pedro, Alexandra R. Fernandes, Teresa Casimiro, Vasco D. B. Bonifacio, and Ana Aguiar-Ricardo. "POxylated Dendrimer-Based Nano-in-Micro Dry Powder Formulations for Inhalation Chemotherapy." Chemistryopen 7 (2018): 772-779. Abstract

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2017
Coelho, Beatriz, Bruno Veigas, Elvira Fortunato, Rodrigo Martins, Hugo Aguas, Rui Igreja, and Pedro V. Baptista. "Digital Microfluidics for Nucleic Acid Amplification." Sensors 17 (2017). Abstract

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Coelho, Beatriz Jorge, Bruno Veigas, Hugo Aguas, Elvira Fortunato, Rodrigo Martins, Pedro Viana Baptista, and Rui Igreja. "A Digital Microfluidics Platform for Loop-Mediated Isothermal Amplification Detection." Sensors 17 (2017). Abstract

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Raposo, L. R., C. Roma-Rodrigues, P. Faisca, M. Alves, J. Henriques, MC Carvalheiro, M. L. Corvo, P. V. Baptista, A. J. Pombeiro, and A. R. Fernandes. "Immortalization and characterization of a new canine mammary tumour cell line FR37-CMT." Veterinary and Comparative Oncology 15 (2017): 952-967. Abstract

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Roma-Rodrigues, Catarina, Francisca Pereira, Antonio P. Alves de Matos, Marta Fernandes, Pedro V. Baptista, and Alexandra R. Fernandes. "Smuggling gold nanoparticles across cell types - A new role for exosomes in gene silencing." Nanomedicine-Nanotechnology Biology and Medicine 13 (2017): 1389-1398. Abstract

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2016
Roma-Rodrigues, Catarina, Cynthia Alves-Barroco, Luis R. Raposo, Mafalda N. Costa, Elvira Fortunato, Pedro Viana Baptista, Alexandra R. Fernandes, and Ilda Santos-Sanches. "Infection of human keratinocytes by Streptococcus dysgalactiae subspecies dysgalactiae isolated from milk of the bovine udder." Microbes and Infection 18 (2016): 290-293. Abstract

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2015
Conde, João, Alfredo Ambrosone, Yulán Hernandez, Furong Tian, Mark McCully, Catherine C. Berry, Pedro V. Baptista, and Claudia T. " 15 years on siRNA delivery: Beyond the State-of-the-Art on inorganic nanoparticles for RNAi therapeutics." NANO TODAY In Press (2015). Abstract

RNAi has always captivated scientists due to its tremendous power to modulate the phenotype of living organisms. This natural and powerful biological mechanism can now be harnessed to down-regulate specific gene expression in diseased cells; opening up endless opportunities. Since most of the conventional siRNA delivery methods are limited by a narrow therapeutic index and significant side and off-target effects, we are now in the dawn of a new age in gene therapy driven by nanotechnology vehicles for RNAi therapeutics. Here, we outlook the "do's and dont's" of the inorganic RNAi nanomaterials developed in the last 15 years and the different strategies employed are compared and scrutinized, offering important suggestions for the next 15.

Larguinho, Miguel, Sara Figueiredo, Ana Cordeiro, Fábio Ferreira Carlos, Milton Cordeiro, Pedro Pedrosa, and Pedro Viana Baptista. "Nanoparticles for Diagnostics and Imaging." In Frontiers in Nanomedicine, edited by Maria Luisa Bondì Bondì, Chiara Botto and Erika Amore, 3-46. Bentham Science, 2015. Abstractsample.pdf

Nanoparticles possess unique optical and physic-chemical properties that may potentiate applications in biomedicine, in particular in diagnostics, therapy and imaging. Advances on biomolecular diagnostics strategies have greatly focused on single molecule detection and characterization of DNA, RNA or proteins through improved nanoparticle-based platforms. Nanoparticles improve analytical capability when compared to traditional techniques with high resolution and medium-high throughput. Also, particular interest has been directed at SNP detection, gene expression profiles and biomarker characterization through colorimetric, spectrometric or electrochemical strategies.
Molecular imaging has also benefited from the introduction of nanoparticles in standard techniques towards non-invasive imaging procedures that can be used to highlight regions of interest, allowing the characterization of biological processes at the cellular and/or molecular level. Several imaging modalities are associated with low sensitivity, an issue that can be tackled by the use of probes, e.g. contrast agents for X-ray and magnetic resonance imaging, radiolabelled molecules for nuclear medicine. Furthermore, nanoparticles can be used as vehicles that deliver specifically these contrast agents, leading to overcome the limitations of conventional modalities.
This chapter will discuss the use of nanoparticles in biomolecular recognition and imaging applications, focusing those already being translated into clinical settings. Current knowledge will be addressed as well as its evolution towards the future of nanoparticle-based biomedical applications.

Larguinho, Miguel, Sofia Santos, Joao Almeida, and Pedro V. Baptista. "DNA adduct identification using gold-aptamer nanoprobes." Iet Nanobiotechnology 9 (2015): 95-101. Abstract

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Bernacka-Wojcik, Iwona, Hugo Aguas, Fabio Ferreira Carlos, Paulo Lopes, Pawel Jerzy Wojcik, Mafalda Nascimento Costa, Bruno Veigas, Rui Igreja, Elvira Fortunato, Pedro Viana Baptista, and Rodrigo Martins. "Single Nucleotide Polymorphism Detection Using Gold Nanoprobes and Bio-Microfluidic Platform With Embedded Micro lenses." Biotechnology and Bioengineering 112 (2015): 1210-1219. Abstract

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2014
Bernacka-Wojcik, Iwona, Susana Ribeiro, Pawel Jerzy Wojcik, Pedro Urbano Alves, Tito Busani, Elvira Fortunato, Pedro Viana Baptista, José António Covas, Hugo Águas, Loic Hilliou, and Rodrigo Martins. " Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length." RSC ADVANCES 4 (2014). AbstractWebsite

This paper presents the performance of a passive planar rhombic micromixer with diamond-shaped obstacles and a rectangular contraction between the rhombi. The device was experimentally optimized using water for high mixing efficiency and a low pressure drop over a wide range of Reynolds numbers (Re = 0.1–117.6) by varying geometrical parameters such as the number of rhombi, the distance between obstacles and the contraction width. Due to the large amount of data generated, statistical methods were used to facilitate and improve the results of the analysis. The results revealed a rank of factors influencing mixing efficiency: Reynolds number > number of rhombi > contraction width > inter-obstacles distance. The pressure drop measured after three rhombi depends mainly on Re and inter-obstacle distance. The resulting optimum geometry for the low Re regime has a contraction width of 101 μm and inter-obstacles distance of 93 μm, while for the high Re regime a contraction width of 400 μm and inter-obstacle distance of 121 μm are more appropriate. These mixers enabled 80% mixing efficiency creating a pressure drop of 6.0 Pa at Re = 0.1 and 5.1 × 104 Pa at Re = 117.6, with a mixer length of 2.5 mm. To the authors' knowledge, the developed mixer is one of the shortest planar passive micromixers reported to date.

Restani, Rita B., João Conde, Pedro V. Baptista, Maria Teresa Cidade, Ana M. Bragança, Jorge Morgado, Ilídio J. Correia, Ana Aguiar-Ricardo, and Vasco D. B. Bonifacio. "Polyurea dendrimer for efficient cytosolic siRNA delivery." RSC ADVANCES 4 (2014): 54872. AbstractWebsite

The design of small interfering RNA (siRNA) delivery materials showing efficacy in vivo is at the forefront of nanotherapeutics research. Polyurea (PURE-type) dendrimers are ‘smart’ biocompatible 3D polymers that unveil a dynamic and elegant back-folding mechanism involving hydrogen bonding between primary amines at the surface and tertiary amines and ureas at the core. Similarly, to a biological proton pump, they are able to automatically and reversibly transform their conformation in response to pH stimulus. Here, we show that PURE-G4 is a useful gene silencing platform showing no cellular toxicity. As a proof of concept we investigated the PURE-G4-siRNA dendriplex, which was shown to be an attractive platform with high transfection efficacy. The simplicity associated with the complexation of siRNA with polyurea dendrimers makes them a powerful tool for efficient cytosolic siRNA delivery.

Reimão-Pinto, M. M., A. Cordeiro, C. Almeida, A. V. Pinheiro, A. Moro, J. C. Lima, and P. V. Baptista. "Dual-color control of nucleotide polymerization sensed by a fluorescence actuator." Photochem Photobiol Sci 13 (2014): 751-6. AbstractWebsite

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Bernacka-Wojcik, Iwona, Susana Ribeiro, Pawel Jerzy Wojcik, Pedro Urbano Alves, Tito Busani, Elvira Fortunato, Pedro Viana Baptista, Jose Antonio Covas, Hugo Aguas, Loic Hilliou, and Rodrigo Martins. "Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length." Rsc Advances 4 (2014): 56013-56025. Abstract

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Luis, Daniel V., Joana Silva, Ana Isabel Tomaz, Rodrigo F. M. de Almeida, Miguel Larguinho, Pedro V. Baptista, Luisa M. D. R. S. Martins, Telma F. S. Silva, Pedro M. Borralho, Cecilia M. P. Rodrigues, Antonio S. Rodrigues, Armando J. L. Pombeiro, and Alexandra R. Fernandes. "Insights into the mechanisms underlying the antiproliferative potential of a Co(II) coordination compound bearing 1,10-phenanthroline-5,6-dione: DNA and protein interaction studies." Journal of Biological Inorganic Chemistry 19 (2014): 787-803. Abstract

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Quaresma, Pedro, Ines Osorio, Goncalo Doria, Patricia A. Carvalho, Andre Pereira, Judith Langer, Joao Pedro Araujo, Isabel Pastoriza-Santos, Luis M. Liz-Marzan, Ricardo Franco, Pedro V. Baptista, and Eulalia Pereira. "Star-shaped magnetite@gold nanoparticles for protein magnetic separation and SERS detection." Rsc Advances 4 (2014): 3659-3667. AbstractWebsite

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