Publications

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Conde, João, Alfredo Ambrosone, Yulán Hernandez, Furong Tian, Mark McCully, Catherine C. Berry, Pedro V. Baptista, and Claudia T. " 15 years on siRNA delivery: Beyond the State-of-the-Art on inorganic nanoparticles for RNAi therapeutics." NANO TODAY In Press (2015). Abstract

RNAi has always captivated scientists due to its tremendous power to modulate the phenotype of living organisms. This natural and powerful biological mechanism can now be harnessed to down-regulate specific gene expression in diseased cells; opening up endless opportunities. Since most of the conventional siRNA delivery methods are limited by a narrow therapeutic index and significant side and off-target effects, we are now in the dawn of a new age in gene therapy driven by nanotechnology vehicles for RNAi therapeutics. Here, we outlook the "do's and dont's" of the inorganic RNAi nanomaterials developed in the last 15 years and the different strategies employed are compared and scrutinized, offering important suggestions for the next 15.

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Bernacka-Wojcik, Iwona, Susana Ribeiro, Pawel Jerzy Wojcik, Pedro Urbano Alves, Tito Busani, Elvira Fortunato, Pedro Viana Baptista, José António Covas, Hugo Águas, Loic Hilliou, and Rodrigo Martins. " Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length." RSC ADVANCES 4 (2014). AbstractWebsite

This paper presents the performance of a passive planar rhombic micromixer with diamond-shaped obstacles and a rectangular contraction between the rhombi. The device was experimentally optimized using water for high mixing efficiency and a low pressure drop over a wide range of Reynolds numbers (Re = 0.1–117.6) by varying geometrical parameters such as the number of rhombi, the distance between obstacles and the contraction width. Due to the large amount of data generated, statistical methods were used to facilitate and improve the results of the analysis. The results revealed a rank of factors influencing mixing efficiency: Reynolds number > number of rhombi > contraction width > inter-obstacles distance. The pressure drop measured after three rhombi depends mainly on Re and inter-obstacle distance. The resulting optimum geometry for the low Re regime has a contraction width of 101 μm and inter-obstacles distance of 93 μm, while for the high Re regime a contraction width of 400 μm and inter-obstacle distance of 121 μm are more appropriate. These mixers enabled 80% mixing efficiency creating a pressure drop of 6.0 Pa at Re = 0.1 and 5.1 × 104 Pa at Re = 117.6, with a mixer length of 2.5 mm. To the authors' knowledge, the developed mixer is one of the shortest planar passive micromixers reported to date.

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Sutradhar, M., E. C. B. A. Alegria, F. Ferretti, L. R. Raposo, M. F. C. Guedes da Silva, P. V. Baptista, A. R. Fernandes, and A. J. L. Pombeiro. "Antiproliferative activity of heterometallic sodium and potassium-dioxidovanadium(V) polymers." J Inorg Biochem 200 (2019): 110811. AbstractWebsite

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Bernacka-Wojcik, Iwona, Paulo Lopes, Ana Catarina Vaz, Bruno Veigas, Pawel Jerzy Wojcik, Pedro Simões, David Barata, Elvira Fortunato, Pedro V. Baptista, Hugo Águas, and Rodrigo Martins. "Bio-microfluidic platform for gold nanoprobe based DNA detection—application to Mycobacterium tuberculosis." Biosens Bioelectron 48 (2013): 87-93. AbstractWebsite

We have projected and fabricated a microfluidic platform for DNA sensing that makes use of an optical colorimetric detection method based on gold nanoparticles. The platform was fabricated using replica moulding technology in PDMS patterned by high-aspect-ratio SU-8 moulds. Biochips of various geometries were tested and evaluated in order to find out the most efficient architecture, and the rational for design, microfabrication and detection performance is presented. The best biochip configuration has been successfully applied to the DNA detection of Mycobacterium tuberculosis using only 3 µl on DNA solution (i.e. 90 ng of target DNA), therefore a 20-fold reduction of reagents volume is obtained when compared with the actual state of the art.

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Machado, Diana, Isabel Couto, João Perdigão, Liliana Rodrigues, Isabel Portugal, Pedro Baptista, Bruno Veigas, Leonard Amaral, and Miguel Viveiros. "Contribution of efflux to the emergence of isoniazid and multidrug resistance in Mycobacterium tuberculosis." PLoS ONE 7 (2012): e34538.
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Conde, Joao, Alfredo Ambrosone, Vanesa Sanz, Yulan Hernandez, Valentina Marchesano, Furong Tian, Hannah Child, Catherine C. Berry, Ricardo M. Ibarra, Pedro V. Baptista, Claudia Tortiglione, and Jesus M. de la Fuente. "Design of Multifunctional Gold Nanoparticles for In Vitro and In Vivo Gene Silencing." Acs Nano 6 (2012): 8316-8324. Abstract

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Conde, J., A. Ambrosone, Y. Hernandez, V. Marchesano, F. Tian, M. Ricardo Ibarra, P. V. Baptista, C. Tortiglione, and J. M. de la Fuente. "Designing gold nanoparticles for in vivo gene silencing as a new therapeutic tool." Human Gene Therapy 24 (2013): A24. Abstract

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Coelho, Beatriz, Bruno Veigas, Elvira Fortunato, Rodrigo Martins, Hugo Aguas, Rui Igreja, and Pedro V. Baptista. "Digital Microfluidics for Nucleic Acid Amplification." Sensors 17 (2017). Abstract

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Coelho, Beatriz Jorge, Bruno Veigas, Hugo Aguas, Elvira Fortunato, Rodrigo Martins, Pedro Viana Baptista, and Rui Igreja. "A Digital Microfluidics Platform for Loop-Mediated Isothermal Amplification Detection." Sensors 17 (2017). Abstract

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Larguinho, Miguel, Sofia Santos, Joao Almeida, and Pedro V. Baptista. "DNA adduct identification using gold-aptamer nanoprobes." Iet Nanobiotechnology 9 (2015): 95-101. Abstract

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Reimão-Pinto, M. M., A. Cordeiro, C. Almeida, A. V. Pinheiro, A. Moro, J. C. Lima, and P. V. Baptista. "Dual-color control of nucleotide polymerization sensed by a fluorescence actuator." Photochem Photobiol Sci 13 (2014): 751-6. AbstractWebsite

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Ribeiro, A. P. C., S. Anbu, E. C. B. A. Alegria, A. R. Fernandes, P. V. Baptista, R. Mendes, A. S. Matias, M. Mendes, M. F. C. Guedes da Silva, and A. J. L. Pombeiro. "Evaluation of cell toxicity and DNA and protein binding of green synthesized silver nanoparticles." Biomedicine & Pharmacotherapy 101 (2018): 137-144. AbstractWebsite

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Bernacka-Wojcik, Iwona, Susana Ribeiro, Pawel Jerzy Wojcik, Pedro Urbano Alves, Tito Busani, Elvira Fortunato, Pedro Viana Baptista, Jose Antonio Covas, Hugo Aguas, Loic Hilliou, and Rodrigo Martins. "Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length." Rsc Advances 4 (2014): 56013-56025. Abstract

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Oliveira, B., B. Veigas, A. R. Fernandes, H. Águas, R. Martins, E. Fortunato, and P. V. Baptista. "Fast Prototyping Microfluidics: Integrating Droplet Digital Lamp for Absolute Quantification of Cancer Biomarkers." Sensors (Basel) 20 (2020). AbstractWebsite

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Guirgis, Bassem S. S., Claudia Sa e Cunha, Ines Gomes, Miguel Cavadas, Isabel Silva, Goncalo Doria, Gregory L. Blatch, Pedro V. Baptista, Eulalia Pereira, Hassan M. E. Azzazy, Maria M. Mota, Miguel Prudencio, and Ricardo Franco. "Gold nanoparticle-based fluorescence immunoassay for malaria antigen detection." Analytical and Bioanalytical Chemistry 402 (2012): 1019-1027. Abstract

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Costa, P., A. Amaro, A. Botelho, J. Inacio, and P. V. Baptista. "Gold nanoprobe assay for the identification of mycobacteria of the Mycobacterium tuberculosis complex." Clinical Microbiology and Infection 16 (2010): 1464-1469. Abstract

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Costa, P., A. Amaro, A. Botelho, J. Inácio, and P. V. Baptista. "Gold nanoprobe assay for the identification of mycobacteria of the Mycobacterium tuberculosis complex." Clin Microbiol Infect 16 (2010): 1464-9. AbstractWebsite

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Costa, Pedro, Ana Amaro, Ana Botelho, João Inácio, and Pedro V. Baptista. "Gold nanoprobes assay for identification of mycobacteria from the Mycobacterium tuberculosis complex." Clin Microbiol Infect. 16 (2010): 1464-1469.
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Raposo, L. R., C. Roma-Rodrigues, P. Faisca, M. Alves, J. Henriques, MC Carvalheiro, M. L. Corvo, P. V. Baptista, A. J. Pombeiro, and A. R. Fernandes. "Immortalization and characterization of a new canine mammary tumour cell line FR37-CMT." Veterinary and Comparative Oncology 15 (2017): 952-967. Abstract

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Roma-Rodrigues, Catarina, Cynthia Alves-Barroco, Luis R. Raposo, Mafalda N. Costa, Elvira Fortunato, Pedro Viana Baptista, Alexandra R. Fernandes, and Ilda Santos-Sanches. "Infection of human keratinocytes by Streptococcus dysgalactiae subspecies dysgalactiae isolated from milk of the bovine udder." Microbes and Infection 18 (2016): 290-293. Abstract

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Bernacka-Wojcik, Iwona, Rohan Senadeera, Pawel Jerzy Wojcik, Leonardo Bione Silva, Gonçalo Doria, Pedro Baptista, Hugo Aguas, Elvira Fortunato, and Rodrigo Martins. "Inkjet printed and "doctor blade" TiO2 photodetectors for DNA biosensors." Biosens. Bioelectron. 25 (2010): 1229-1234.
Luis, Daniel V., Joana Silva, Ana Isabel Tomaz, Rodrigo F. M. de Almeida, Miguel Larguinho, Pedro V. Baptista, Luisa M. D. R. S. Martins, Telma F. S. Silva, Pedro M. Borralho, Cecilia M. P. Rodrigues, Antonio S. Rodrigues, Armando J. L. Pombeiro, and Alexandra R. Fernandes. "Insights into the mechanisms underlying the antiproliferative potential of a Co(II) coordination compound bearing 1,10-phenanthroline-5,6-dione: DNA and protein interaction studies." Journal of Biological Inorganic Chemistry 19 (2014): 787-803. Abstract

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Beola, L., L. Asín, C. Roma-Rodrigues, Y. Fernández-Afonso, R. M. Fratila, D. Serantes, S. Ruta, R. W. Chantrell, A. R. Fernandes, P. V. Baptista, J. M. de la Fuente, V. Grazú, and L. Gutiérrez. "The Intracellular Number of Magnetic Nanoparticles Modulates the Apoptotic Death Pathway after Magnetic Hyperthermia Treatment." ACS Appl Mater Interfaces 12 (2020): 43474-43487. AbstractWebsite

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M
Sanz, Vanesa, Joao Conde, Alfredo Ambrosone, Yulan Hernandez, Valentina Marchesasno, Giovani G. Estrada, Manuel R. Ibarra, Pedro V. Baptista, Furong Tian, Claudia Tortiglione, and Jesus M. de la Fuente. "Multifunctional gold nanoparticles for gene silencing." Abstracts of Papers of the American Chemical Society 243 (2012). Abstract

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Alves, Pedro Urbano, Raquel Vinhas, Alexandra R. Fernandes, Semra Zuhal Birol, Levent Trabzon, Iwona Bernacka-Wojcik, Rui Igreja, Paulo Lopes, Pedro Viana Baptista, Hugo Águas, Elvira Fortunato, and Rodrigo Martins. "Multifunctional microfluidic chip for optical nanoprobe based RNA detection – application to Chronic Myeloid Leukemia." Scientific Reports 8 (2018): 381. AbstractWebsite

Many diseases have their treatment options narrowed and end up being fatal if detected during later stages. As a consequence, point-of-care devices have an increasing importance for routine screening applications in the health sector due to their portability, fast analyses and decreased cost. For that purpose, a multifunctional chip was developed and tested using gold nanoprobes to perform RNA optical detection inside a microfluidic chip without the need of molecular amplification steps. As a proof-of-concept, this device was used for the rapid detection of chronic myeloid leukemia, a hemato-oncological disease that would benefit from early stage diagnostics and screening tests. The chip passively mixed target RNA from samples, gold nanoprobes and saline solution to infer a result from their final colorimetric properties. An optical fiber network was used to evaluate its transmitted spectra inside the chip. Trials provided accurate output results within 3 min, yielding signal-to-noise ratios up to 9 dB. When compared to actual state-of-art screening techniques of chronic myeloid leukemia, these results were, at microscale, at least 10 times faster than the reported detection methods for chronic myeloid leukemia. Concerning point-of-care applications, this work paves the way for other new and more complex versions of optical based genosensors.