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2012
Baltazar, LG, Henriques FMA, Jorne F.  2012.  Grout optimisation for old masonry consolidation, 18th-20th Decemb. Proceedings of the 4th National Congress on Construction. , Coimbra, Portugal
Kanudia, A, Boavida D, van den Broek M, Cabal H, Gargiulo M, Gouveia JP, Labriet M, Seixas J, Tosato GC.  2012.  CCS infrastructure development scenarios for the integrated Iberian Peninsula and Morocco energy system, 18-22 November. GHGT_11, Conference session #9 on “CCS technology assessment and system integration”. , Kyoto International Conference Center, Japan
van den Broek, M, Mesquita P, Carneiro J, Silva J, Berghout N, Ramirez A, Gouveia JP, Seixas J, Cabal H, Martinez R, Rimi A, Boavida D, Tosato GC.  2012.  Region specific challenges of a CO2 pipeline infrastructure in the West Mediterranean area - Model results versus stakeholder views., 18-22 November. GHGT_11, on “CCS technology assessment and system integration”. , Kyoto International Conference Center, Japan.
Baltazar, LG, Henriques FMA, Jorne F.  2012.  Hydraulic lime grouts for masonry injection – effects of admixtures on the fresh grout properties, 15th - 17th Octo. Proceedings of the 8th International Conference on Structural Analysis of Historical Constructions. , Wroclaw, Poland
Amado, M, Montalvão D, Santana P, Lopes T.  2012.  Sustainability assessment – An applied sustainability method energy supply in informal settlements, 1 June. IAIA 2012. , Porto: International Association of Impact Asssessment
Santana, SDF, Pina AS, Roque ACA.  2012.   Immobilization of enterokinase on magnetic supports for the cleavage of fusion proteins. Journal of Biotechnology. 161:378–382. AbstractWebsite

Magnetic nanobiocatalysts for tag cleavage on fusion proteins have been prepared by immobilizing
enterokinase (EK) onto iron oxide magnetic nanoparticles coated with biopolymers. Two different
chemistries have been explored for the covalent coupling of EK, namely carbodiimide (EDC coupling)
and maleimide activation (Sulfo coupling). Upon immobilization, EK initial activity lowered but EDC coupling lead to higher activity retention. Regarding the stability ofthe nanobiocatalysts,thesewere recycled
up to ten times with the greater activity losses observed in the first two cycles. The immobilized EK also
proved to cleave a control fusion protein and to greatly simplify the separation of the enzyme from the
reaction mixture.

Brás, A, Henriques FMA, Cidade MT.  2012.  - Rheological behaviour of hydraulic lime-based grouts. Shear-time and temperature dependence. Mechanics of Time-Dependent Materials. DOI 10.1007/s11043-012-9202-0
Tana, M, Bianchi A, Sclocco R, Franchin T, Cerutti S, Leal A.  2012.  . Parcel-Based Connectivity Analysis of fMRI Data for the Study of Epileptic Seizure Propagation.. Brain Topography . (DOI:10.1007/s10548-012-0225-2)
Brecher, C, Breitbach T, Müller S, Mayer MP, Odenthal B, Schlick C, Herfs W.  2012.  3D Assembly Group Analysis for Cognitive Automation. Journal of Robotics. 2012(1):1-18. AbstractWebsite

A concept that allows the cognitive automation of robotic assembly processes is introduced. An assembly cell comprised of two robots was designed to verify the concept. For the purpose of validation a customer-defined part group consisting of Hubelino bricks is assembled. One of the key aspects for this process is the verification of the assembly group. Hence a software component was designed that utilizes the Microsoft Kinect to perceive both depth and color data in the assembly area. This information is used to determine the current state of the assembly group and is compared to a CAD model for validation purposes. In order to efficiently resolve erroneous situations, the results are interactively accessible to a human expert. The implications for an industrial application are demonstrated by transferring the developed concepts to an assembly scenario for switch-cabinet systems.

Contreras, Javier, Gomes, Luis, Filonovich, Sergej Alexandrovich, Correia, Nuno, Fortunato, Martins, Ferreira I.  2012.  3D scanning characteristics of an amorphous silicon position sensitive detector array system. Optics Express. 20(4):4583-4602.
Fontes, CMGA, Correia ISá, Romão MJ, Sá-Nogueira I, Prates JAM, Ferreira LMA.  2012.  Editorial of the 9th Carbohydrate Bioengineering Meeting (CBM9).. Biocatalysis and Biotransformation. 30:273-273., Number 3
Neves, Nuno, Barros, R., Antunes, Elsa, Calado, João, Fortunato, Martins, Ferreira I.  2012.  Aluminum doped zinc oxide sputtering targets obtained from nanostructured powders: Processing and application. Journal of the European Ceramic Society. 32(16):4381-4391.
Contreras, Javier, Idzikowski, Marek, Pereira, Filonovich, Sergej Alexandrovich, Fortunato, Martins, Ferreira I.  2012.  Amorphous Silicon Position Sensitive Detector Array for Fast 3-D Object Profiling. IEEE SENSORS JOURNAL. 12(4):812-820.
Ataíde, F, Azevedo C, Clemente JJ, Cunha AE, Freitas F, Reis MAM, Roque ACA, Oliveira R.  2012.  Analysis of oxygen transport enhancement by functionalized magnetic nanoparticles (FMP) in bioprocesses. New Biotechnology. 29S:S75.Website
Cardoso, MM, Peça IN, Roque ACA.  2012.  Antibody-Conjugated Nanoparticles for Therapeutic Applications. Current Medicinal Chemistry. 19(19):3103-3127. AbstractWebsite

A great challenge to clinical development is the delivery of chemotherapeutic agents, known to cause severe toxic effects, directly to diseased sites which increase the therapeutic index whilst minimizing off-target side effects. Antibody-conjugated nanoparticles offer great opportunities to overcome these limitations in therapeutics. They combine the advantages given by the nanoparticles with the ability to bind to their target with high affinity and improve cell penetration given by the antibodies. This specialized vehicle, that can encapsulate several chemotherapeutic agents, can be engineered to possess the desirable properties, allowing overcoming the successive physiological conditions and to cross biological barriers and reach a specific tissue or cell. Moreover, antibody-conjugated nanoparticles have shown the ability to be internalized through receptor-mediated endocytosis and accumulate in cells without being recognized by the P-glycoprotein, one of the main mediators of multi-drug resistance, resulting in an increase in the intracellular concentration of drugs. Also, progress in antibody engineering has allowed the manipulation of the basic antibody structure for raising and tailoring specificity and functionality. This review explores recent developments on active drug targeting by nanoparticles functionalized with monoclonal antibodies (polymeric micelles, liposomes and polymeric nanoparticles) and summarizes the opportunities of these targeting strategies in the therapy of serious diseases (cancer, inflammatory diseases, infectious diseases, and thrombosis).

Latino, DARS, Aires-de-Sousa J.  2012.  Automatic Perception of Chemical Similarities Between Metabolic Pathways. Molecular Informatics. (31):135-144.Website
Bahubalindruni, Ganga, Tavares, Vitor Grade, Barquinha, Duarte, Candido, Martins, Fortunato, de Oliveira PG.  2012.  Basic analog circuits with a-GIZO thin-film transistors: Modeling and simulation. 2012 International Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design (SMACD).
Dell'Acqua, S, Pauleta SR, Moura JJ, Moura I.  2012.  Biochemical characterization of the purple form of Marinobacter hydrocarbonoclasticus nitrous oxide reductase. Philos Trans R Soc Lond B Biol Sci. 367(1593):1204-1212.
Barroso, T, Roque ACA, Aguiar-Ricardo A.  2012.  Bioinspired and Sustainable Chitosan Based Monoliths for Antibody Capture and Release. RSC ADV. 2(30):11285-11294. AbstractWebsite

Chitosan-based monoliths activated by plasma technology induced the coupling of a robust biomimetic ligand, previously reported as an artificial Protein A, with high yields while minimizing the environmental impact of the procedure. Due to the high porosity, good mechanical and tunable physicochemical properties of the affinity chitosan-based monoliths, it is possible to achieve high binding capacities (150 ± 10 mg antibody per gram support), and to recover 90 ± 5% of the bound protein with 98% purity directly from cell-culture extracts. Therefore, the chitosan-based monoliths prepared by clean processes exhibit a remarkable performance for the one-step capture and recovery of pure antibodies or other biological molecules with biopharmaceutical relevance.

Velloso, GT.  2012.  Brain-Computer Interface (BCI): a methodological proposal to assess the impacts of medical applications in 2022. Enterprise and Work Innovation Studies. 8:57-81. AbstractWebsite

Technology assessment is essentially an approach, a collective of the systematic methods used to scientifically investigate the conditions for and the consequences of technology and technicising and to denote their societal evaluation. It is an investigation about the technological developments as well as an evaluation of its potential impacts on society. The assessment of emerging technologies, however, requires special attention. Brain-Computer Interface (BCI) is an emerging technology which allows for the direct communication between the brain and an external device. It is a truly direct connection, with no use of the normal output pathways of peripheral nerves and muscles, allowing for the brain to have control over objects and software without intermediates. To address these kinds of technologies at early stages of development, Constructive Technology Assessment (CTA), a member of Technology Assessment approaches, has been considered as one of the most fitting approaches. As an emerging technology, BCI is at its early stages of research and thus many challenges are still ahead. Mainstream adoption is not expected in least 10 years many challenges are yet to be overcome. Therefore, the objective of this article is to discuss and present a methodological approach to assess brain-computer interface technology considering constructive technology assessment and future oriented technology analysis as the main processes to undertake the assessment. The assessment will focus only on the non-invasive type of BCI and for medical applications in three defined areas: Communication & Control, Motor Substitution and Motor Recovery for a time horizon of 10 years, 2022. These areas were chosen based on the capability of BCI to serve as a replacement of normal neuromuscular pathways. That makes it one of the best technologies to help people in activating and controlling assistive technologies which enable communication and control of the environment. However, the real impacts of BCI will depend directly on the development of competing technologies, and also on the improvement in BCI research. Only then, the potential applications and end users could grow dramatically.

Simão, J, Garrochinho T, Veiga L.  2012.  A checkpointing-enabled and resource-aware Java Virtual Machine for efficient and robust e-Science applications in grid environments. Concurrency and Computation: Practice and Experience. 24:1421–1442., Number 13: John Wiley & Sons, Ltd Abstract2012-ccpe-simao.pdfWebsite

Object-oriented programming languages presently are the dominant paradigm of application development (e.g., Java, .NET). Lately, increasingly more Java applications have long (or very long) execution times and manipulate large amounts of data/information, gaining relevance in fields related with e-Science (with Grid and Cloud computing). Significant examples include Chemistry, Computational Biology and Bio-informatics, with many available Java-based APIs (e.g., Neobio).Often, when the execution of such an application is terminated abruptly because of a failure (regardless of the cause being a hardware of software fault, lack of available resources, etc.), all of its work already performed is simply lost, and when the application is later re-initiated, it has to restart all its work from scratch, wasting resources and time, while also being prone to another failure and may delay its completion with no deadline guarantees.Our proposed solution to address these issues is through incorporating mechanisms for checkpointing and migration in a JVM. These make applications more robust and flexible by being able to move to other nodes, without any intervention from the programmer. This article provides a solution to Java applications with long execution times, by extending a JVM (Jikes research virtual machine) with such mechanisms. Copyright © 2011 John Wiley & Sons, Ltd.

Simão, J, Veiga L.  2012.  A Classification of Middleware to Support Virtual Machines Adaptability in IaaS. 11th International Workshop on Adaptive and Reflective Middleware (ARM 2012), In conjuntion with Middleware 2012. : ACM Abstract2012-arm-simao.pdf

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Silva, TF, Martins LM, da Silva MFG, Fernandes AR, Silva A, Borralho PM, Santos S, Rodrigues CM, Pombeiro AJ.  2012.  Cobalt complexes bearing scorpionate ligands: synthesis, characterization, cytotoxicity and DNA cleavage. Dalton Trans. 41(41):12888-97.12silvadt.pdf
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