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2012
Guirgis, BSS, e Cunha CSá, Gomes I, Cavadas M, Silva I, Doria G, Blatch GL, Baptista PV, Pereira E, Azzazy HME, Mota MM, Prudêncio M, Franco R.  2012.  GOLD NANOPARTICLES-BASED FLUORESCENCE IMMUNOASSAY FOR MALARIA ANTIGEN DETECTION. Anal. Bioanal. Chem.. 402:1019-1027.
Veigas, Bruno, Jacob, Jorge M., Costa, Santos, GMC, Viveiros, Miguel, Inacio, Joao, Martins, Barquinha, Fortunato, Baptista PV.  2012.  Gold on paper-paper platform for Au-nanoprobe TB detection. Lab on a Chip. 12:4802-4808.
Parthiban, S., Gokulakrishnan, V., Elangovan, E., Gonçalves, G., Ramamurthi, K., Fortunato, Martins R.  2012.  High mobility and visible-near infrared transparent titanium doped indium oxide thin films produced by spray pyrolysis. Thin Solid Films. 524(1):268-271.
Santos, S, Marques V, Pires M, Silveira L, Oliveira H, Lanca V, Brito D, Madeira H, Esteves JF, Freitas A, Carreira IM, Gaspar IM, Monteiro C, Fernandes AR.  2012.  High resolution melting: improvements in the genetic diagnosis of hypertrophic cardiomyopathy in a Portuguese cohort. BMC Med Genet. 13:17.12santosbmcmg.pdf
Filonovich, Sergej Alexandrovich, Águas, Hugo, Busani, Tito, Vicente, António, Araújo, Andreia, Gaspar, Diana, Vilarigues, Marcia, Leitão, Joaquim, Fortunato, Martins R.  2012.  Hydrogen plasma treatment of very thin p-type nanocrystalline Si films grown by RF-PECVD in the presence of B(CH3)(3). Science and Technology of Advanced Materials. 13(4)
Dias, RJ, Vale TM, Lourenço JM.  2012.  In-Place Metainfo Support in DeuceSTM. Talk presented at the 2nd Euro-TM Workshop on Transactional Memory. , Bern, Switzerland Abstractwtm12-presentation.pptx_.pdf

Several Software Transactional Memory (STM) algorithms have been developed in the last few years. These algorithms differ in many different properties, such as progress and safety guarantees, contention management, etc. Some STM frameworks (DSTM2, DeuceSTM) were developed to allow the implementation and comparison of many different algorithms using the same transactional interface. The information required by an STM algorithm is either associated with the execution of a transaction (frequently referred as transaction descriptor), or associated with each memory location (or object reference) accessed within the transaction. The transaction descriptor is typically stored in a thread-local memory space and maintains the information necessary to validate and commit a memory transaction. The information associated with each memory location depends on the nature of the STM algorithm, which we will henceforth refer to as metadata, and may be composed by e.g. locks, timestamps or version lists. Since metadata is associated with each memory location, there are two main strategies regarding the location for storing such metadata: The metadata is stored either near each memory location (in-place strategy); or in a mapping table that associates the metadata with the corresponding memory location (out- place strategy). DeuceSTM is one of the most efficient STM frameworks available for the Java programming language and provides a well defined interface that allows to implement several STM algorithms using an out-place strategy. This work describes the adaptation and extension of DeuceSTM to support the in-place metadata strategy. Our approach complies to the following properties: Efficiency –- The STM implementation does not rely on an auxiliary mapping table, thus providing faster direct access to the transactional metadata; Non-transactional code is oblivious to the presence of metadata in objects, hence there is no performance overhead whatsoever for non-transactional code; Transactional code avoids the extra memory dereference imposed by the decorator pattern; Primitive types are fully supported, even in transactional code; And we provide a solution for fully supporting transactional N-dimensional arrays, which again impose no overhead on non-transactional code. Transparency –- The STM implementation automatically identifies, creates and initializes the necessary additional metadata fields in the objects; Non-transactional code is oblivious to the presence of metadata in objects, hence no code changes are required; The new transactional array types (supporting metadata for individual cells) are compatible with the standard arrays, hence not requiring any pre-/post- processing of the arrays when invoking standard or third-party non-transactional libraries. Performance benchmarking has confirmed that our approach for supporting in-place metadata in DeuceSTM, alongside with the existing out-place strategy, is a valid functional complement, widening the range of algorithms that can be efficiently implemented in DeuceSTM, enabling their fair comparison in a common infrastructure.

Osório, I, Igreja R, Franco R, Cortez J.  2012.  Incorporation of silver nanoparticles on textile materials. Materials Lett. . 75:200-203.
Boavida, N, Moretto SM.  2012.  Innovation assessment in a local branch of a rail transport industry: Case study. Tecnología Base de la Innovación?. , Querétaro: Universidad Autónoma de Querétaro
Gokulakrishnan, V., Parthiban, S., Elangovan, E., Jeganathan, K., Kanjilal, D., Asokan, K., Martins, Fortunato, Ramamurthi K.  2012.  Investigation of O7+ swift heavy ion irradiation on molybdenum doped indium oxide thin films. Radiation Physics and Chemistry. 81(6):589-593.
SCUTARU, G, SANDU F, COCORADA E, PAVALACHE M, Gomes L, Coito F, MÖRSKY-LINDQUIST AK, TALABA D, NEUNDORF V, FEDAK V, Others.  2012.  Konsoliderad rapport ang{\aa}ende användning av VR och fjärrexperiment i utbildning. Abstract

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Araújo, T, Nunes N, Quintão C, Gamboa H.  2012.  Localized electroencephalography sensor and detection of evoked potentials. Proc INSTICC 2nd International Workshop on Computing Paradigms for Mental Health - MindCare 2012 (MINDCARE 2012). , Vilamoura, Portugal
Gomes, R, Neuza N, Sousa J, Gamboa H.  2012.  Long-term biosignals visualization and processing. Proceedings of Biosignals - 5th International Conference on Bio-Inspired and Signal Processing (BIOSIGNALS 2012). , Vilamoura, Portugal
Wojcik, PJ, Cruz AS, Santos L, Pereira L, Martins R, Fortunato E.  2012.  Microstructure control of dual-phase inkjet-printed a-WO3/TiO2/WOX films for high-performance electrochromic applications. J. Mater. Chem. . 22:13268-13278.
Araújo, T, Nunes N, Gamboa H.  2012.  Miniaturized wireless controlled electroestimulator. Proceedings of Biodevices - 5th International Conference on Bio-Inspired and Signal Processing (BIODEVICES 2012). , Vilamoura, Portugal
Muller, C, Marcou G, Horvath D, Aires-de-Sousa J, Varnek A.  2012.  Models for Identification of Erroneous Atom-to-Atom Mapping of Reactions Performed by Automated Algorithms. J. Chem. Inf. Model. 52(12):3116-3122.Website
Vale, TM.  2012.  A Modular Distributed Transactional Memory Framework. : Universidade Nova de Lisboa Abstract2012-tiago_vale.pdf

The traditional lock-based concurrency control is complex and error-prone due to its low-level nature and composability challenges. Software transactional memory (STM), inherited from the database world, has risen as an exciting alternative, sparing the programmer from dealing explicitly with such low-level mechanisms. In real world scenarios, software is often faced with requirements such as high availability and scalability, and the solution usually consists on building a distributed system. Given the benefits of STM over traditional concurrency controls, Distributed Software Transactional Memory (DSTM) is now being investigated as an attractive alternative for distributed concurrency control. Our long-term objective is to transparently enable multithreaded applications to execute over a DSTM setting. In this work we intend to pave the way by defining a modular DSTM framework for the Java programming language. We extend an existing, efficient, STM framework with a new software layer to create a DSTM framework. This new layer interacts with the local STM using well-defined interfaces, and allows the implementation of different distributed memory models while providing a non-intrusive, familiar, programming model to applications, unlike any other DSTM framework. Using the proposed DSTM framework we have successfully, and easily, implemented a replicated STM which uses a Certification protocol to commit transactions. An evaluation using common STM benchmarks showcases the efficiency of the replicated STM, and its modularity enables us to provide insight on the relevance of different implementations of the Group Communication System required by the Certification scheme, with respect to performance under different workloads.

Pereira, Barquinha, Gonçalves, G., Fortunato, Martins R.  2012.  Multicomponent dielectrics for oxide TFT. Proceedings . 8263
Mathies, G, Almeida RM, Gast P, Moura JJ, Groenen EJ.  2012.  Multifrequency EPR Study of Fe(3+) and Co(2+) in the Active Site of Desulforedoxin. J Phys Chem B. 116(24):7122-7128.
Musat, V, Fortunato E, Purica M, Mazilu M, do Rego AMB, Diaconu B, Busani T.  2012.  Multifunctional zinc oxide nanostructures for a new generation of devices. Mater. Chem. Phys. . 132 :339-346..
Bahubalindruni, Ganga, Duarte, Candido, Tavares, Vitor Grade, Barquinha, Martins, Fortunato, de Oliveira PG.  2012.  Multipliers with transparent a-GIZO TFTs using a neural model. 20th Telecommunications Forum (TELFOR). , Belgrade
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