Publications

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Costa, Pedro, Ana Amaro, Ana Botelho, João Inácio, and Pedro V. Baptista. "Gold nanoprobes assay for identification of mycobacteria from the Mycobacterium tuberculosis complex." Clin Microbiol Infect. 16 (2010): 1464-1469.
Pedrosa, Pedro, Bruno Veigas, Diana Machado, Isabel Couto, Miguel Viveiros, and Pedro V. Baptista. "Gold nanoprobes for multi loci assessment of multi-drug resistant tuberculosis." Tuberculosis 94 (2014): 332-337. AbstractWebsite

Tuberculosis, still one of the leading human infectious diseases, reported 8.7 million new cases in 2011 alone. Also, the increasing rate of multidrug-resistant tuberculosis (MDRTB) and its treatment difficulties pose a serious public health threat especially in developing countries. Resistance to isoniazid and rifampicin, first line antibiotics, is commonly associated with point mutations in katG, inhA and rpoB genes of Mycobacterium tuberculosis complex (MTBC). Therefore, the development of cheap, fast and simple molecular methods to assess susceptibility profiles would have a huge impact in the capacity of early diagnosis and treatment of MDRTB.

Gold nanoparticles functionalized with thiol-modified oligonucleotides (Au-nanoprobes) have shown the potential to provide a rapid and sensitive detection method for MTBC and single base mutations associated with antibiotic resistance, namely the characterization of the three most relevant codons in rpoB gene associated to rifampicin resistance. Here we extend the Au-nanoprobe approach towards discriminating specific mutations within inhA and rpoB genes in PCR amplified DNA from isolates. Using a multiplex PCR reaction for these two genes, it is possible to assess both loci in parallel, and extend the potential of the Au-nanoprobe method to MDRTB molecular characterization with special application in the most frequent Portuguese genotypes.

Vinhas, R., C. Correia, P. Ribeiro, A. Lourenco, A. Sousa, A. Fernandes, and P. Baptista. "GOLD NANOPROBES IN THE DIAGNOSTIC OF CHRONIC MYELOID LEUKEMIA: DETECTION OF THE E14A2 BCR-ABL TRANSCRIPT DIRECTLY IN RNA SAMPLES." Leukemia Research 39 (2015): S90. Abstract

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Pedrosa, Pedro, Raquel Vinhas, Alexandra Fernandes, and Pedro V. Baptista. "Gold Nanotheranostics: Proof-of-Concept or Clinical Tool?" Nanomaterials 5 (2015): 1853-1879. AbstractWebsite

Nanoparticles have been making their way in biomedical applications and personalized medicine, allowing for the coupling of diagnostics and therapeutics into a single nanomaterial—nanotheranostics. Gold nanoparticles, in particular, have unique features that make them excellent nanomaterials for theranostics, enabling the integration of targeting, imaging and therapeutics in a single platform, with proven applicability in the management of heterogeneous diseases, such as cancer. In this review, we focus on gold nanoparticle-based theranostics at the lab bench, through pre-clinical and clinical stages. With few products facing clinical trials, much remains to be done to effectively assess the real benefits of nanotheranostics at the clinical level. Hence, we also discuss the efforts currently being made to translate nanotheranostics into the market, as well as their commercial impact.

Veigas, Bruno, Jorge M. Jacob, Mafalda N. Costa, David S. Santos, Miguel Viveiros, Joao Inacio, Rodrigo Martins, Pedro Barquinha, Elvira Fortunato, and Pedro Viana Baptista. "Gold on paper-paper platform for Au-nanoprobe TB detection." Lab on a Chip 12 (2012): 4802-4808. Abstract

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Conde, João, João Rosa, and Pedro V. Baptista. "Gold-Nanobeacons as a Theranostic System for the Detection and Inhibition of Specific Genes." Nature Protocol Exchange (2013). AbstractWebsite

This protocol describes the synthesis and detailed calibration of a gold nanoparticle-based nanobeacon (Au-nanobeacon) as an innovative theranostic approach for detection and inhibition of sequence-specific DNA and RNA for in vitro and ex vivo applications. Under hairpin configuration, proximity to gold nanoparticles leads to fluorescence quenching; hybridization to a complementary target restores fluorescence emission due to the gold nanobeacons’ conformational reorganization that causes the fluorophore and the AuNP to part from each other. This concept can easily be extended and adapted to assist the in vitro evaluation of silencing potential of a given sequence to be later used for ex vivo gene silencing and RNAi approaches, with the ability to monitor real-time gene delivery action. The time range for the entire protocol is ~8 days, including synthesis, functionalization and calibration of Au-nanobeacons, RNAi and gene silencing assays.

Conde, João, Miguel Larguinho, Ana Cordeiro, Luis R. Raposo, Pedro M. Costa, Susana Santos, Mário Diniz, Alexandra R. Fernandes, and Pedro Viana Baptista. "Gold-Nanobeacons for gene therapy: evaluation of genotoxicity, cell toxicity and proteome profiling analysis." Nanotoxicology 8 (2014): 521-532. AbstractWebsite

Antisense therapy is a powerful tool for post-transcriptional gene silencing suitable for down-regulating target genes associated to disease. Gold nanoparticles have been described as effective intracellular delivery vehicles for antisense oligonucleotides providing increased protection against nucleases and targeting capability via simple surface modification. We constructed an antisense gold-nanobeacon consisting of a stem-looped oligonucleotide double-labelled with 3′-Cy3 and 5′-Thiol-C6 and tested for the effective blocking of gene expression in colorectal cancer cells. Due to the beacon conformation, gene silencing was directly detected as fluorescence increases with hybridisation to target, which can be used to assess the level of silencing. Moreover, this system was extensively evaluated for the genotoxic, cytotoxic and proteomic effects of gold-nanobeacon exposure to cancer cells. The exposure was evaluated by two-dimensional protein electrophoresis followed by mass spectrometry to perform a proteomic profile and 3-(4,5-Dimethylthiazol-2-Yl)-2,5-Diphenyltetrazolium Bromide (MTT) assay, glutathione-S-transferase assay, micronucleus test and comet assay to assess the genotoxicity. This integrated toxicology evaluation showed that the proposed nanotheranostics strategy does not exhibit significant toxicity, which is extremely relevant when translating into in vivo systems.

Rosa, J., J. Conde, J. M. de la Fuente, J. C. Lima, and P. V. Baptista. "Gold-nanobeacons for real-time monitoring of RNA synthesis." Biosens Bioelectron 36 (2012): 161-7. AbstractWebsite

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Conde, João, João Rosa, Jesús M. de la Fuente, and Pedro V. Baptista. "Gold-nanobeacons for simultaneous gene specific silencing and intracellular tracking of the silencing events." Biomaterials 34 (2013): 2516-2523.
Baptista, P. V., M. Koziol-Montewka, J. Paluch-Oles, and al.et. "Gold-nanoparticle-probe-based assay for rapid and direct detection of Mycobacterium tuberculosis DNA in clinical samples." CLINICAL CHEMISTRY 52 (2006): 1433-1434. Abstract

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Doria, G., M. Larguinho, J. T. Dias, E. Pereira, R. Franco, and P. V. Baptista. "Gold-silver-alloy nanoprobes for one-pot multiplex DNA detection." Nanotechnology 21 (2010): 255101. AbstractWebsite

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