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2006
Wang, L, Weber AN, Atilano ML, Filipe SR, Gay NJ, Ligoxygakis P.  2006.  Sensing of Gram-positive bacteria in Drosophila: GNBP1 is needed to process and present peptidoglycan to PGRP-SA. EMBO J. 25:5005-5014.
Messias, AC, Aguiar AP, Brennan L, Salgueiro CA, Saraiva LM, Xavier AV, Turner DL.  2006.  Solution structures of tetrahaem ferricytochrome c3 from Desulfovibrio vulgaris (Hildenborough) and its K45Q mutant: The molecular basis of cooperativity. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1757(2):143-153. AbstractWebsite

The NMR structure of the oxidised wild-type cytochrome c3 from Desulfovibrio vulgaris Hildenborough was determined in solution. Using a newly developed methodology, NMR data from the K45Q mutant was then grafted onto data from the wild-type protein to determine the structure in the region of the mutation. The structural origins of the redox-Bohr effect and haem–haem cooperativities are discussed with respect to the redox-related conformational changes observed in solution.

Pessanha, M, Morgado L, Louro RO, Londer YY, Pokkuluri PR, Schiffer M, Salgueiro CA.  2006.  Thermodynamic Characterization of Triheme Cytochrome PpcA from Geobacter sulfurreducens:  Evidence for a Role Played in e-/H+ Energy Transduction. Biochemistry. 45(46):13910-13917. AbstractWebsite

The facultative aerobic bacterium Geobacter sulfurreducens produces a small periplasmic c-type triheme cytochrome with 71 residues (PpcA) under anaerobic growth conditions, which is involved in the iron respiration. The thermodynamic properties of the PpcA redox centers and of a protonatable center were determined using NMR and visible spectroscopy techniques. The redox centers have negative and different reduction potentials (−162, −143, and −133 mV for heme I, III, and IV, respectively, for the fully reduced and protonated protein), which are modulated by redox interactions among the hemes (covering a range from 10 to 36 mV) and by redox−Bohr interactions (up to −62 mV) between the hemes and a protonatable center located in the proximity of heme IV. All the interactions between the four centers are dominated by electrostatic effects. The microscopic reduction potential of heme III is the one most affected by the oxidation of the other hemes, whereas heme IV is the most affected by the protonation state of the molecule. The thermodynamic properties of PpcA showed that pH strongly modulates the redox behavior of the individual heme groups. A preferred electron transfer pathway at physiologic pH is defined, showing that PpcA has the necessary thermodynamic properties to perform e-/H+ energy transduction, contributing to a H+ electrochemical potential gradient across the periplasmic membrane that drives ATP synthesis. PpcA is 46% identical in sequence to and shares a high degree of structural similarity with a periplasmic triheme cytochrome c7 isolated from Desulfuromonas acetoxidans, a bacterium closely related to the Geobacteracea family. However, the results obtained for PpcA are quite different from those published for D. acetoxidans c7, and the physiological consequences of these differences are discussed.

Possoz*, C, Filipe* SR, Grainge I, Sherratt DJ.  2006.  Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo. EMBO J. 25:2596-2604.
Portugal, CAM, Crespo JG, Lima JC.  2006.  Anomalous "unquenching" of the fluorescence decay times of beta-lactoglobulin induced by the known quencher acrylamide. Journal of Photochemistry and Photobiology B-Biology. 82:117-126., Number 2 Abstract
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Bazzicalupi, C, Bencini A, Bianchi A, Borsari L, Danesi A, Giorgi C, Lodeiro C, Mariani P, Pina F, Santarelli S, Tamayo A, Valtancoli B.  2006.  Basicity and coordination properties of a new phenanthroline-based bis- macrocyclic receptor. Dalton Transactions. :4000-4010., Number 33 AbstractWebsite
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Braga, SS, Gago S, Seixas JD, Valente AA, Pillinger M, Santos TM, Goncalves IS, Romao CC.  2006.  beta-cyclodextrin and permethylated beta-cyclodextrin inclusion compounds of a cyclopentadienyl molybdenum tricarbonyl complex and their use as cyclooctene epoxidation catalyst precursors. Inorganica Chimica Acta. 359:4757-4764., Number 15 AbstractWebsite
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Ortigueira, M.  2006.  A coherent approach to non-integer order derivatives. Signal Processing. 86:2505–2515., Number 10: Elsevier AbstractWebsite

The relation showing that the Grunwald-Letnikov and generalised Cauchy derivatives are equal is presented. This establishes a bridge between two different formulations and simultaneously between the classic integer order derivatives and the fractional ones. Starting from the generalised Cauchy derivative formula, new relations are obtained, namely a regularised version that makes the concept of pseudo-function appear naturally without the need for a rejection of any infinite part. From the regularised derivative, new formulations are deduced and specialised first for the real functions and afterwards for functions with Laplace transforms obtaining the definitions proposed by Lionville. With these tools suitable definitions of fractional linear systems are obtained.

Bazzicalupi, C, Bencini A, Bianchi A, Borsari L, Danesi A, Giorgi C, Mariani P, Pina F, Santarelli S, Valtancoli B.  2006.  Coordination features of a terpyridine-containing polyamine receptor. Effect of protonation on the photophysical properties of the complexes. Dalton Transactions. :5743-5752., Number 48 AbstractWebsite
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Vilela, M, Ferreira LM, Vieira J.  2006.  Discolouration of architectural photoreproductions - Causes and prevention. RESTAURATOR-INTERNATIONAL JOURNAL FOR THE PRESERVATION OF LIBRARY AND ARCHIVAL MATERIAL. 27:1-8., Number 1 Abstract
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Fortunato, R, Branco LC, Afonso CAM, Benavente J, Crespo JG.  2006.  Electrical impedance spectroscopy characterisation of supported ionic liquid membranes. Journal of Membrane Science. 270:42-49., Number 1-2 AbstractWebsite
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Laia, CAT, Costa SMB, Ferreira VLF.  2006.  Electron-transfer mechanism of the triplet state quenching of aluminium tetrasulfonated phthalocyanine by cytochrome c. Biophysical Chemistry. 122:143-155., Number 2 AbstractWebsite
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Santos-Silva, T, Trincao J, Carvalho AL, Bonifacio C, Auchere F, Raleiras P, Moura I, Moura JJG, Romao MJ.  2006.  The first crystal structure of class III superoxide reductase from Treponema pallidum. Journal of Biological Inorganic Chemistry. 11:548-558., Number 5 AbstractWebsite
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Portugal, CAM, Lima JC, Crespo JG.  2006.  Fluorescence probing of structural and functional changes of proteins induced by ultrafiltration. Desalination. 199:547-549., Number 1-3 Abstract
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Moniz, A.  2006.  Foresight methodologies to understand changes in the labour process: Experience from Portugal. , Number 5686: University Library of Munich, Germany Abstract

The foresight and scenario building methods can be an interesting reference for social sciences, especially in terms of innovative methods for labour process analysis. A scenario – as a central concept for the prospective analysis – can be considered as a rich and detailed portrait of a plausible future world. It can be a useful tool for policy-makers to grasp problems clearly and comprehensively, and to better pinpoint challenges as well as opportunities in an overall framework. The features of the foresight methods are being used in some labour policy making experiences. Case studies developed in Portugal will be presented, and some conclusions will be drawn in order to organise a set of principles for foresight analysis applied to the European project WORKS on the work organisation re-structuring in the knowledge society, and on the work design methods for new management structures of virtual organisations.

Raaijmakers, HCA, Romao MJ.  2006.  Formate-reduced E-coli formate dehydrogenase H: the reinterpretation of the crystal structure suggests a new reaction mechanism. Journal of Biological Inorganic Chemistry. 11:849-854., Number 7 AbstractWebsite
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Ortigueira, M.D., Machado, J.A.T. (Eds.).  2006.  Fractional calculus applications in signals and systems. Signal Processing. 86:2503–2504., Number 10: Elsevier Abstract
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Ortigueira, M.  2006.  Fractional Centred Differences and Derivatives. Proceedings of the 2nd IFAC Workshop on Fractional Differentiation and its Applications. Abstract
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Gago, S, Fernandes JA, Abrantes M, Kuhn FE, Ribeiro-Claro P, Pillinger M, Santos TM, Goncalves IS.  2006.  Immobilisation of methyltrioxorhenium on functionalised MCM-41. Microporous and Mesoporous Materials. 89:284-290., Number 1-3 AbstractWebsite
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Angurell, I, Lima JC, Rodriguez L-I, Rodriguez L, Rossell O, Seco M.  2006.  Metallodendrimers containing both ruthenium (internal layer) and rhenium (external layer). New Journal of Chemistry. 30:1004-1008., Number 7 Abstract
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Brondino, CD, Romao MJ, Moura I, Moura JJG.  2006.  Molybdenum and tungsten enzymes: the xanthine oxidase family. Current Opinion in Chemical Biology. 10:109-114., Number 2 AbstractWebsite
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Ortigueira, MD, Batista AG.  2006.  On the fractional derivative of stationary stochastic processes. CST2006 & ECT2006 Conferences. Abstract
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de Melo, SJ, Rondao R, Burrows HD, Melo MJ, Navaratnam S, Edge R, Voss G.  2006.  Photophysics of an indigo derivative (keto and leuco structures) with singular properties. Journal of Physical Chemistry A. 110:13653-13661., Number 51 AbstractWebsite
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Portugal, CAM, Lima JC, Crespo JG.  2006.  Probing the change of enzymatic activity of horseradish peroxidase induced by membrane permeation using tryptophan fluorescence. Journal of Membrane Science. 284:180-192., Number 1-2 Abstract
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