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2022
Ferreira‐silva, M, Faria‐silva C, Carvalheiro {MC }, Simões S, Marinho S}{H, Marcelino P, Campos {MC}, Metselaar {JM }, Fernandes E, Baptista {PV}, Fernandes {AR}, Corvo L}{M.  2022.  Quercetin Liposomal Nanoformulation for Ischemia and Reperfusion Injury Treatment, jan. Pharmaceutics. 14, Number 1: MDPI AG Abstract

Ischemia and reperfusion injury (IRI) is a common complication caused by inflammation and oxidative stress resulting from liver surgery. Current therapeutic strategies do not present the desirable efficacy, and severe side effects can occur. To overcome these drawbacks, new therapeutic alternatives are necessary. Drug delivery nanosystems have been explored due to their capacity to improve the therapeutic index of conventional drugs. Within nanocarriers, liposomes are one of the most successful, with several formulations currently in the market. As improved therapeutic outcomes have been demonstrated by using liposomes as drug carriers, this nanosystem was used to deliver quercetin, a flavonoid with anti-inflammatory and antioxidant properties, in hepatic IRI treatment. In the present work, a stable quercetin liposomal formulation was developed and characterized. Additionally, an in vitro model of ischemia and reperfusion was developed with a hypoxia chamber, where the anti-inflammatory potential of liposomal quercetin was evaluated, revealing the downregulation of pro-inflammatory markers. The anti-inflammatory effect of quercetin liposomes was also assessed in vivo in a rat model of hepatic IRI, in which a decrease in inflammation markers and enhanced recovery were observed. These results demonstrate that quercetin liposomes may provide a significant tool for addressing the current bottlenecks in hepatic IRI treatment.

Marques, AC.  2022.  Supercapacitors for a wearable All-FIBRE device, Feb28-Mar2. 3nd Condensed Matter Physics National Conference. , Faculdade de Ciências da Universidade de Lisboa (FCUL): Portuguese Society of Physics
Alves, R, Rodrigues J, Ramou E, Palma S, Roque A, Gamboa H.  2022.  Classification of Volatile Compounds with Morphological Analysis of e-nose Response, Feb. Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOSIGNALS. :31–39.: Scitepress AbstractPDF

Electronic noses (e-noses) mimic human olfaction, by identifying Volatile Organic Compounds (VOCs). This
work presents a novel approach that successfully classifies 11 known VOCs using the signals generated by
sensing gels in an in-house developed e-nose. The proposed signals’ analysis methodology is based on the
generated signals’ morphology for each VOC since different sensing gels produce signals with different shapes
when exposed to the same VOC. For this study, two different gel formulations were considered, and an average
f1-score of 84% and 71% was obtained, respectively. Moreover, a standard method in time series classification
was used to compare the performances. Even though this comparison reveals that the morphological approach
is not as good as the 1-nearest neighbour with euclidean distance, it shows the possibility of using descriptive
sentences with text mining techniques to perform VOC classification.

Oliveira, A, Ramou E, Teixeira G, Palma S, Roque A.  2022.  Incorporation of VOC-Selective Peptides in Gas Sensing Materials, feb. Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies. :25–34. AbstractPDFWebsite

Enhancing the selectivity of gas sensing materials towards specific volatile organic compounds (VOCs) is
challenging due to the chemical simplicity of VOCs as well as the difficulty in interfacing VOC selective
biological elements with electronic components used in the transduction process. We aimed to tune the
selectivity of gas sensing materials through the incorporation of VOC-selective peptides into gel-like gas
sensing materials. Specifically, a peptide (P1) known to discriminate single carbon deviations among benzene
and derivatives, along with two modified versions (P2 and P3), were integrated with gel compositions
containing gelatin, ionic liquid and without or with a liquid crystal component (ionogels and hybrid gels
respectively). These formulations change their electrical or optical properties upon VOC exposure, and were
tested as sensors in an in-house developed e-nose. Their ability to distinct and identify VOCs was evaluated
via a supervised machine learning classifier. Enhanced discrimination of benzene and hexane was detected
for the P1-based hybrid gel. Additionally, complementarity of the electrical and optical sensors was observed
considering that a combination of both their accuracy predictions yielded the best classification results for the
tested VOCs. This indicates that a combinatorial array in a dual-mode e-nose could provide optimal
performance and enhanced selectivity.

Alves-Barroco, C, Rivas-García L, Fernandes {AR}, Baptista {PV}.  2022.  Light Triggered Enhancement of Antibiotic Efficacy in Biofilm Elimination Mediated by Gold-Silver Alloy Nanoparticles, feb. Frontiers in Microbiology. 13:1–15.: Frontiers Research Foundation Abstract

Bacterial biofilm is a tri-dimensional complex community of cells at different metabolic stages involved in a matrix of self-produced extracellular polymeric substances. Biofilm formation is part of a defense mechanism that allows the bacteria to survive in hostile environments, such as increasing resistance or tolerance to antimicrobial agents, causing persistent infections hard to treat and impair disease eradication. One such example is bovine mastitis associated with Streptococcus dysgalactiae subsp. dysgalactiae (SDSD), whose worldwide health and economic impact is on the surge. As such, non-conventional nanobased approaches have been proposed as an alternative to tackle biofilm formation and to which pathogenic bacteria fail to adapt. Among these, metallic nanoparticles have gained significant attention, particularly gold and silver nanoparticles, due to their ease of synthesis and impact against microorganism growth. This study provides a proof-of-concept investigation into the use of gold-silver alloy nanoparticles (AuAgNPs) toward eradication of bacterial biofilms. Upon visible light irradiation of AuAgNPs there was considerable disturbance of the biofilms' matrix. The hindering of structural integrity of the biofilm matrix resulted in an increased permeability for entry of antibiotics, which then cause the eradication of biofilm and inhibit subsequent biofilm formation. Additionally, our results that AuAgNPs inhibited the formation of SDSD biofilms via distinct stress pathways that lead to the downregulation of two genes critical for biofilm production, namely, brpA-like encoding biofilm regulatory protein and fbpA fibronectin-binding protein A. This study provides useful information to assist the development of nanoparticle-based strategies for the active treatment of biofilm-related infections triggered by photoirradiation in the visible.

Lenis-Rojas, {OA}, Carvalho B, Cabral R, Silva M, Friães S, Roma-Rodrigues C, Meireles {MSH }, Gomes {CSB}, Fernández {JAA }, Vila {SF }, Rubiolo {JA }, Sanchez L, Baptista {PV}, Fernandes {AR}, Royo B.  2022.  Manganese(I) tricarbonyl complexes as potential anticancer agents, feb. JBIC Journal of Biological Inorganic Chemistry. 27:49–64., Number 1: Springer Abstract

The antiproliferative activity of [Mn(CO)3(N^N)Br] (N^N = phendione 1, bipy 3) and of the two newly synthesized Mn complexes [Mn(CO)3(acridine)(phendione)]OTf (2) and [Mn(CO)3(di-triazole)Br] (4) has been evaluated by MTS against three tumor cell lines A2780 (ovarian carcinoma), HCT116 (colorectal carcinoma), HCT116doxR (colorectal carcinoma resistant to doxorubicin), and in human dermal fibroblasts. The antiproliferative assay showed a dose-dependent effect higher in complex 1 and 2 with a selectivity toward ovarian carcinoma cell line 21 times higher than in human fibroblasts. Exposure of A2780 cells to IC50 concentrations of complex 1 and 2 led to an increase of reactive oxygen species that led to the activation of cell death mechanisms, namely via intrinsic apoptosis for 2 and autophagy and extrinsic apoptosis for 1. Both complexes do not target DNA or interfere with cell cycle progression but are able to potentiate cell migration and neovascularization (for 2) an indicative that their application might be directed for initial tumor stages to avoid tumor invasion and metastization and opening a new avenue for complex 2 application in regenerative medicine. Interestingly, both complexes do not show toxicity in both in vivo models (CAM and zebrafish). Graphical abstract: [Figure not available: see fulltext.]

Nuez-Martínez, M, Queralt-Martín M, Muñoz-Juan A, Aguilella {VM }, Laromaine A, Teixidor F, Viñas C, Pinto {CG }, Pinheiro T, Guerreiro {JF }, Mendes F, Roma-Rodrigues C, Baptista {PV}, Fernandes {AR}, Valic S, Marques F.  2022.  Boron clusters (ferrabisdicarbollides) shaping the future as radiosensitizers for multimodal (chemo/radio/PBFR) therapy of glioblastoma, dec. Journal of Materials Chemistry B. 10:9794–9815., Number 47: RSC - Royal Society of Chemistry Abstract

Glioblastoma multiforme (GBM) is the most common and fatal primary brain tumor, and is highly resistant to conventional radiotherapy and chemotherapy. Therefore, the development of multidrug resistance and tumor recurrence are frequent. Given the poor survival with the current treatments, new therapeutic strategies are urgently needed. Radiotherapy (RT) is a common cancer treatment modality for GBM. However, there is still a need to improve RT efficiency, while reducing the severe side effects. Radiosensitizers can enhance the killing effect on tumor cells with less side effects on healthy tissues. Herein, we present our pioneering study on the highly stable and amphiphilic metallacarboranes, ferrabis(dicarbollides) ([o-FESAN]− and [8,8′-I2-o-FESAN]−), as potential radiosensitizers for GBM radiotherapy. We propose radiation methodologies that utilize secondary radiation emissions from iodine and iron, using ferrabis(dicarbollides) as iodine/iron donors, aiming to achieve a greater therapeutic effect than that of a conventional radiotherapy. As a proof-of-concept, we show that using 2D and 3D models of U87 cells, the cellular viability and survival were reduced using this treatment approach. We also tested for the first time the proton boron fusion reaction (PBFR) with ferrabis(dicarbollides), taking advantage of their high boron (11B) content. The results from the cellular damage response obtained suggest that proton boron fusion radiation therapy, when combined with boron-rich compounds, is a promising modality to fight against resistant tumors. Although these results are encouraging, more developments are needed to further explore ferrabis(dicarbollides) as radiosensitizers towards a positive impact on the therapeutic strategies for GBM.

Barbosa, DJ, Capela JP, Ferreira LM, Branco PS, Fernandes E, de Bastos ML, Carvalho F.  2022.  Ecstasy metabolites and monoamine neurotransmitters upshift the Na+/K+ ATPase activity in mouse brain synaptosomes, DEC. ARCHIVES OF TOXICOLOGY. 96:3279-3290., Number 12 Abstract
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Gago, D, Corvo MC, Chagas R, Ferreira LM, Coelhoso I.  2022.  Protein Adsorption Performance of a Novel Functionalized Cellulose-Based Polymer, DEC. POLYMERS. 14, Number 23 Abstract

Dicarboxymethyl cellulose (DCMC) was synthesized and tested for protein adsorption. The prepared polymer was characterized by inductively coupled plasma atomic emission spectrometry (ICP-AES), attenuated total reflection Fourier-transform infrared spectroscopy (ATR-FTIR) and solid state nuclear magnetic resonance (ssNMR) to confirm the functionalization of cellulose. This work shows that protein adsorption onto DCMC is charge dependent. The polymer adsorbs positively charged proteins, cytochrome C and lysozyme, with adsorption capacities of 851 and 571 mg g(-1), respectively. In both experiments, the adsorption process follows the Langmuir adsorption isotherm. The adsorption kinetics by DCMC is well described by the pseudo second-order model, and adsorption equilibrium was reached within 90 min. Moreover, DCMC was successfully reused for five consecutive adsorption-desorption cycles, without compromising the removal efficiency (98-99%).

Twilley, D, Meyer D, Langhansova L, Mcgaw {LJ }, Madikizela B, Roma-Rodrigues C, Baptista, {P. V}, Fernandes {AR }, Lall N.  2022.  Short Lecture 4 {"}Evaluation of antiproliferative and anti-angiogenic activity of an ethanolic extract of Helichrysum odoratissimum (L.) Sweet against skin cancer{"}, dec. Planta Medica. 88:1398–1398., Number 15: Georg Thieme Verlag Abstract
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Esteves, C, Palma SICJ, Costa HMA, Alves C, Santos GMC, Ramou E, Carvalho AL, Alves V, Roque ACA.  2022.  Tackling Humidity with Designer Ionic Liquid-Based Gas Sensing Soft Materials, dec. Advanced Materials. 34:2107205., Number 8: John Wiley & Sons, Ltd AbstractPDFWebsite

Relative humidity is simultaneously a sensing target and a contaminant in gas and volatile organic compound (VOC) sensing systems, where strategies to control humidity interference are required. An unmet challenge is the creation of gas-sensitive materials where the response to humidity is controlled by the material itself. Here, humidity effects are controlled through the design of gelatin formulations in ionic liquids without and with liquid crystals as electrical and optical sensors, respectively. In this design, the anions [DCA]− and [Cl]− of room temperature ionic liquids from the 1-butyl-3-methylimidazolium family tailor the response to humidity and, subsequently, sensing of VOCs in dry and humid conditions. Due to the combined effect of the materials formulations and sensing mechanisms, changing the anion from [DCA]− to the much more hygroscopic [Cl]−, leads to stronger electrical responses and much weaker optical responses to humidity. Thus, either humidity sensors or humidity-tolerant VOC sensors that do not require sample preconditioning or signal processing to correct humidity impact are obtained. With the wide spread of 3D- and 4D-printing and intelligent devices, the monitoring and tuning of humidity in sustainable biobased materials offers excellent opportunities in e-nose sensing arrays and wearable devices compatible with operation at room conditions.

Pereira, HG, Sousa DG, Bradbury JS, Lourenço JM.  2022.  Automatic Generation of Contracts for Concurrent Java Programs, 8-9 Sep.. Atas do INForum 2022. ps22_-_contracts.pdf
Thales, P, Vale TM, Dias RJ, Lourenço JM.  2022.  Empowering a Relational Database with LSD: Lazy State Determination, 8-9 Sep.. Atas do INForum 2022. , Atas INForum 2022. Instituto Politécnico da Guardatv22_-_lsd-sql.pdf
Luna, F, Bradbury JS, Lourenço JM.  2022.  OSCAR - A Java Noise Injection Framework, 8-9 Sep.. Atas do INForum 2022. , Instituto Politécnico da Guardalbl22_-_oscar.pdf
Antão, J, Barreto J, Lourenço JM.  2022.  A Study of Latency-Aware Data-Placement in Heterogeneous (PMEM) Memory Systems, 8-9 Sep.. Atas do INForum 2022. , Instituto Politécnico da Guardaabl22_-_pmem.pdf
Baptista, A.  2022.  Cellulose-based energy storage devices, 20th July. International Summer School “BEST Summer Course on Technology”. , Almada: BEST Group Almada
Oliveira, AR, Mota C, Romão MJ, Pereira IAC.  2022.  The W/SeCys-FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough, 2022/06/10. Encyclopedia of Inorganic and Bioinorganic Chemistry. :1-12. Abstract

Abstract The W/SeCys-FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a dimeric periplasmic enzyme that catalyzes the reversible oxidation of formate and reduction of CO2. It belongs to the group of metal-dependent FDHs, with a tungsten at the active site coordinated by two pyranopterin guanine dinucleotides, a selenocysteine, and one labile sulfur atom. FdhAB has a remarkably high activity and unusual tolerance to oxygen, making it an ideal model system to study biological CO2 reduction.

Firmino, R, Carlos E, Pinto JV, Deuermeier J, Martins R, Fortunato E, Barquinha P, Branquinho R.  2022.  Solution Combustion Synthesis of Hafnium-Doped Indium Oxide Thin Films for Transparent Conductors, 2022/06//. Nanomaterials. 12(13):2167-2167. AbstractWebsite

Indium oxide (In2O3)-based transparent conducting oxides (TCOs) have been widely used and studied for a variety of applications, such as optoelectronic devices. However, some of the more promising dopants (zirconium, hafnium, and tantalum) for this oxide have not received much attention, as studies have mainly focused on tin and zinc, and even fewer have been explored by solution processes. This work focuses on developing solution-combustion-processed hafnium (Hf)-doped In2O3 thin films and evaluating different annealing parameters on TCO’s properties using a low environmental impact solvent. Optimized TCOs were achieved for 0.5 M% Hf-doped In2O3 when produced at 400 °C, showing high transparency in the visible range of the spectrum, a bulk resistivity of 5.73 × 10−2 Ω.cm, a mobility of 6.65 cm2/V.s, and a carrier concentration of 1.72 × 1019 cm−3. Then, these results were improved by using rapid thermal annealing (RTA) for 10 min at 600 °C, reaching a bulk resistivity of 3.95 × 10 −3 Ω.cm, a mobility of 21 cm2/V.s, and a carrier concentration of 7.98 × 1019 cm−3, in air. The present work brings solution-based TCOs a step closer to low-cost optoelectronic applications.

Martins, RA, Carlos E, Deuermeier J, Pereira ME, Martins R, Fortunato E, Kiazadeh A.  2022.  Emergent solution based IGZO memristor towards neuromorphic applications, 2022///. Journal of Materials Chemistry C. 10(6):1991-1998.: Royal Society of Chemistry AbstractWebsite

Solution-based memristors are emergent devices, due to their potential in electrical performance for neuromorphic computing combined with simple and cheap fabrication processes.

Paquete, CM, Morgado L, Salgueiro CA, Louro RO.  2022.  Molecular Mechanisms of Microbial Extracellular Electron Transfer: The Importance of Multiheme Cytochromes, 2022-06-27. FBL. 27(6) AbstractWebsite

Extracellular electron transfer is a key metabolic process of many organismsthat enables them to exchange electrons with extracellular electrondonors/acceptors. The discovery of organisms with these abilities and theunderstanding of their electron transfer processes has become a priority for thescientific and industrial community, given the growing interest on the use ofthese organisms in sustainable biotechnological processes. For example, inbioelectrochemical systems electrochemical active organisms can exchangeelectrons with an electrode, allowing the production of energy and added-valuecompounds, among other processes. In these systems, electrochemical activeorganisms exchange electrons with an electrode through direct or indirectmechanisms, using, in most cases, multiheme cytochromes. In numerouselectroactive organisms, these proteins form a conductive pathway that allowselectrons produced from cellular metabolism to be transferred across the cellsurface for the reduction of an electrode, or vice-versa. Here, the mechanisms bywhich the most promising electroactive bacteria perform extracellular electrontransfer will be reviewed, emphasizing the proteins involved in these pathways.The ability of some of the organisms to perform bidirectional electron transferand the pathways used will also be highlighted.

Paulino, M, Perez-Juste I, Magdalena Cid M, Da Silva JP, Pereira MMA, Basilio N.  2022.  2-Hydroxychalcone-?-Cyclodextrin Conjugate with pH-Modulated Photoresponsive Binding Properties, 2022 OCT 15 JOURNAL OF ORGANIC CHEMISTRY. Abstract

Stimuli-responsive supramolecular receptors are important building blocks for the construction of self-assembled functional materials. We report the design and synthesis of a pH and light-responsive 2-hydroxychalcone-beta-cyclodextrin conjugate (1-Ct) and its characterization by spectroscopic and computational methods. 1-Ct follows the typical reaction network of trans-chalcone-flavylium photoswitches. Upon light irradiation, 1-Ct can be photochemically converted into the cis-chalcone/hemiketal forms (1-Cc/1-B) under neutral pH conditions or to the flavylium cation (1-AH+) at acidic pH values. This stimuli-responsive beta-cyclodextrin host, 1Ct, was found to form stronger intramolecular self-inclusion complexes (Kintra = 14) than 1-AH+ (Kintra = 3) and weaker than 1-Cc/1-B (overall Kintra = 179), allowing control over their stability and binding properties by combinations of pH and light stimuli.

Santos, MFA, Sciortino G, Correia I, Fernandes ACP, Santos-Silva T, Pisanu F, Garribba E, Pessoa JC.  2022.  Binding of VIVO2+, VIVOL, VIVOL2 and VVO2L Moieties to Proteins: X-ray/Theoretical Characterization and Biological Implications, 2022. Chemistry – A European JournalChemistry – A European Journal. 28(40):e202200105.: John Wiley & Sons, Ltd AbstractWebsite

Abstract Vanadium compounds have frequently been proposed as therapeutics, but their application has been hampered by the lack of information on the different V-containing species that may form and how these interact with blood and cell proteins, and with enzymes. Herein, we report several resolved crystal structures of lysozyme with bound VIVO2+ and VIVOL2+, where L=2,2?-bipyridine or 1,10-phenanthroline (phen), and of trypsin with VIVO(picolinato)2 and VVO2(phen)+ moieties. Computational studies complete the refinement and shed light on the relevant role of hydrophobic interactions, hydrogen bonds, and microsolvation in stabilizating the structure. Noteworthy is that the trypsin?VVO2(phen) and trypsin?VIVO(OH)(phen) adducts correspond to similar energies, thus suggesting a possible interconversion under physiological/biological conditions. The obtained data support the relevance of hydrolysis of VIV and VV complexes in the several types of binding established with proteins and the formation of different adducts that might contribute to their pharmacological action, and significantly widen our knowledge of vanadium?protein interactions.

Oliveira, AR, Mota C, Klymanska K, Biaso F, Romão MJ, Guigliarelli B, Pereira IC.  2022.  Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis, 2022. ACS Chemical BiologyACS Chemical Biology. 17(7):1901-1909.: American Chemical Society AbstractWebsite

Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.

Santos, AFM, Cruz C, Godinho MH, Dionísio M, Figueirinhas JL, Branco LC.  2022.  Synthesis and characterisation of ionic liquid crystals based on substituted pyridinium cations, 2022. Liquid CrystalsLiquid Crystals. :1-13.: Taylor & Francis AbstractWebsite
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Ramos, A, Isufi B, Marreiros R, Marchão C.  2022.  Utilização de BEDRF em Ligações Laje-Pilar sujeitas a Ações Horizontais Cíclicas, 2022. 6ªs Jornadas Portuguesas de Engenharia de Estruturas. , Lisbonartigo_bedrf_ciclico_jpee2022_final.pdf