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2023
Coelho, {BJ }, Neto {JP }, Sieira B, Moura {AT }, Fortunato E, Martins R, Baptista {PV}, Igreja R, Águas H.  2023.  Hybrid Digital-Droplet Microfluidic Chip for Applications in Droplet Digital Nucleic Acid Amplification: Design, Fabrication and Characterization. Sensors. 23, Number 10: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Microfluidic-based platforms have become a hallmark for chemical and biological assays, empowering micro- and nano-reaction vessels. The fusion of microfluidic technologies (digital microfluidics, continuous-flow microfluidics, and droplet microfluidics, just to name a few) presents great potential for overcoming the inherent limitations of each approach, while also elevating their respective strengths. This work exploits the combination of digital microfluidics (DMF) and droplet microfluidics (DrMF) on a single substrate, where DMF enables droplet mixing and further acts as a controlled liquid supplier for a high-throughput nano-liter droplet generator. Droplet generation is performed at a flow-focusing region, operating on dual pressure: negative pressure applied to the aqueous phase and positive pressure applied to the oil phase. We evaluate the droplets produced with our hybrid DMF–DrMF devices in terms of droplet volume, speed, and production frequency and further compare them with standalone DrMF devices. Both types of devices enable customizable droplet production (various volumes and circulation speeds), yet hybrid DMF–DrMF devices yield more controlled droplet production while achieving throughputs that are similar to standalone DrMF devices. These hybrid devices enable the production of up to four droplets per second, which reach a maximum circulation speed close to 1540 µm/s and volumes as low as 0.5 nL.

2022
Sarrato, J, Pinto AL, Cruz H, Jordao N, Malta G, Branco PS, Carlos Lima J, Branco LC.  2022.  Effect of Iodide-Based Organic Salts and Ionic Liquid Additives in Dye-Sensitized Solar Cell Performance, SEP. NANOMATERIALS. 12, Number 17 Abstract
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Twilley, D, Thipe {VC }, Kishore N, Bloebaum P, Roma-Rodrigues C, Baptista {PV}, Fernandes {AR}, Selepe {MA }, Langhansova L, Katti K, Lall N.  2022.  Antiproliferative Activity of Buddleja saligna (Willd.) against Melanoma and In Vivo Modulation of Angiogenesis, nov. Pharmaceuticals. 15, Number 12: Molecular Diversity Preservation International (MDPI) Abstract

Melanoma cells secrete pro-angiogenic factors, which stimulates growth, proliferation and metastasis, and therefore are key therapeutic targets. Buddleja saligna (BS), and an isolated triterpenoid mixture (DT-BS-01) showed a fifty percent inhibitory concentration (IC50) of 33.80 ± 1.02 and 5.45 ± 0.19 µg/mL, respectively, against melanoma cells (UCT-MEL-1) with selectivity index (SI) values of 1.64 and 5.06 compared to keratinocytes (HaCat). Cyclooxygenase-2 (COX-2) inhibition was observed with IC50 values of 35.06 ± 2.96 (BS) and 26.40 ± 4.19 µg/mL (DT-BS-01). BS (30 µg/mL) significantly inhibited interleukin (IL)-6 (83.26 ± 17.60%) and IL-8 (100 ± 0.2%) production, whereas DT-BS-01 (5 µg/mL) showed 51.07 ± 2.83 (IL-6) and 0 ± 6.7% (IL-8) inhibition. Significant vascular endothelial growth factor (VEGF) inhibition, by 15.84 ± 4.54 and 12.21 ± 3.48%, respectively, was observed. In the ex ovo chick embryo yolk sac membrane assay (YSM), BS (15 µg/egg) significantly reduced new blood vessel formation, with 53.34 ± 11.64% newly formed vessels. Silver and palladium BS nanoparticles displayed noteworthy SI values. This is the first report on the significant anti-angiogenic activity of BS and DT-BS-01 and should be considered for preclinical trials as there are currently no US Food and Drug Administration (FDA) approved drugs to inhibit angiogenesis in melanoma.

Lenis-Rojas, {OA}, Roma-Rodrigues C, Carvalho B, Cabezas-Sainz P, {Fernández Vila} S, Sánchez L, Baptista {PV}, Fernandes {AR}, Royo B.  2022.  In Vitro and In Vivo Biological Activity of Ruthenium 1,10-Phenanthroline-5,6-dione Arene Complexes, nov. International Journal of Molecular Sciences. 23, Number 21: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Ruthenium(II) arene complexes exhibit promising chemotherapeutic properties. In this study, the effect of the counter anion in Ru(II) complexes was evaluated by analyzing the biological effect of two Ru(II) p-cymene derivatives with the 1,10-phenanthroline-5,6-dione ligand of general-formula [(η6-arene)Ru(L)Cl][X] X = CF3SO3 (JHOR10) and PF6 (JHOR11). The biological activity of JHOR10 and JHOR11 was examined in the ovarian carcinoma cell line A2780, colorectal carcinoma cell line HCT116, doxorubicin-resistant HCT116 (HCT116-Dox) and in normal human dermal fibroblasts. Both complexes JHOR10 and JHOR11 displayed an antiproliferative effect on A2780 and HCT116 cell lines, and low cytotoxicity in fibroblasts. Interestingly, JHOR11 also showed antiproliferative activity in the HCT116-Dox cancer cell line, while JHOR10 was inactive. Studies in A2780 cells showed that JHOR11 induced the production of reactive oxygen species (ROS) that trigger autophagy and cellular senescence, but no apoptosis induction. Further analysis showed that JHOR11 presented no tumorigenicity, with no effect in the cellular mobility, as evaluated by thye wound scratch assay, and no anti- or pro-angiogenic effect, as evaluated by the ex-ovo chorioallantoic membrane (CAM) assay. Importantly, JHOR11 presented no toxicity in chicken and zebrafish embryos and reduced in vivo the proliferation of HCT116 injected into zebrafish embryos. These results show that these are suitable complexes for clinical applications with improved tumor cell cytotoxicity and low toxicity, and that counter-anion alteration might be a viable clinical strategy for improving chemotherapy outcomes in multidrug-resistant (MDR) tumors.

Palma, SICJ, Frazao J, Alves R, Costa HMA, Alves C, Gamboa H, Silveira M, Roque ACA.  2022.  Learning to see VOCs with Liquid Crystal Droplets, may. 2022 IEEE International Symposium on Olfaction and Electronic Nose (ISOEN). :1–4.: IEEE AbstractPDFWebsite

In hybrid gels with immobilized liquid crystal
(LC) droplets, fast and unique optical texture variations are
generated when distinct volatile organic compounds (VOCs)
interact with the LC and disturb its molecular order. The
optical texture variations can be observed under a polarized
optical microscope or transduced into a signal representing the
variations of light transmitted through the LC. We show how
hybrid gels can accurately identify 11 distinct VOCs by using
deep learning to analyze optical texture variations of individual
droplets (0.93 average F1-score) and by using machine learning
to analyze 1D optical signals from multiple droplets in hybrid
gels (0.88 average F1-score)

Esteves, C, Palma S, Costa H, Alves C, Santos G, Ramou E, Roque AC.  2022.  VOC Sensing in Humid and Dry Environments, may. 2022 IEEE International Symposium on Olfaction and Electronic Nose (ISOEN). :1–3.: IEEE AbstractPDFWebsite

We report the development of gas-sensing multicomponent hybrid materials to be used under humidified and dried environments without the need of sample preconditioning or heavy signal processing. The easy tunability and the unique characteristics presented by the multicomponent hybrid materials suggests their use in nearterm applications in electronic nose systems able to operate in dry or humidified environments.

Ferreira‐silva, M, Faria‐silva C, Carvalheiro {MC }, Simões S, Marinho S}{H, Marcelino P, Campos {MC}, Metselaar {JM }, Fernandes E, Baptista {PV}, Fernandes {AR}, Corvo L}{M.  2022.  Quercetin Liposomal Nanoformulation for Ischemia and Reperfusion Injury Treatment, jan. Pharmaceutics. 14, Number 1: MDPI AG Abstract

Ischemia and reperfusion injury (IRI) is a common complication caused by inflammation and oxidative stress resulting from liver surgery. Current therapeutic strategies do not present the desirable efficacy, and severe side effects can occur. To overcome these drawbacks, new therapeutic alternatives are necessary. Drug delivery nanosystems have been explored due to their capacity to improve the therapeutic index of conventional drugs. Within nanocarriers, liposomes are one of the most successful, with several formulations currently in the market. As improved therapeutic outcomes have been demonstrated by using liposomes as drug carriers, this nanosystem was used to deliver quercetin, a flavonoid with anti-inflammatory and antioxidant properties, in hepatic IRI treatment. In the present work, a stable quercetin liposomal formulation was developed and characterized. Additionally, an in vitro model of ischemia and reperfusion was developed with a hypoxia chamber, where the anti-inflammatory potential of liposomal quercetin was evaluated, revealing the downregulation of pro-inflammatory markers. The anti-inflammatory effect of quercetin liposomes was also assessed in vivo in a rat model of hepatic IRI, in which a decrease in inflammation markers and enhanced recovery were observed. These results demonstrate that quercetin liposomes may provide a significant tool for addressing the current bottlenecks in hepatic IRI treatment.

Lenis-Rojas, {OA}, Carvalho B, Cabral R, Silva M, Friães S, Roma-Rodrigues C, Meireles {MSH }, Gomes {CSB}, Fernández {JAA }, Vila {SF }, Rubiolo {JA }, Sanchez L, Baptista {PV}, Fernandes {AR}, Royo B.  2022.  Manganese(I) tricarbonyl complexes as potential anticancer agents, feb. JBIC Journal of Biological Inorganic Chemistry. 27:49–64., Number 1: Springer Abstract

The antiproliferative activity of [Mn(CO)3(N^N)Br] (N^N = phendione 1, bipy 3) and of the two newly synthesized Mn complexes [Mn(CO)3(acridine)(phendione)]OTf (2) and [Mn(CO)3(di-triazole)Br] (4) has been evaluated by MTS against three tumor cell lines A2780 (ovarian carcinoma), HCT116 (colorectal carcinoma), HCT116doxR (colorectal carcinoma resistant to doxorubicin), and in human dermal fibroblasts. The antiproliferative assay showed a dose-dependent effect higher in complex 1 and 2 with a selectivity toward ovarian carcinoma cell line 21 times higher than in human fibroblasts. Exposure of A2780 cells to IC50 concentrations of complex 1 and 2 led to an increase of reactive oxygen species that led to the activation of cell death mechanisms, namely via intrinsic apoptosis for 2 and autophagy and extrinsic apoptosis for 1. Both complexes do not target DNA or interfere with cell cycle progression but are able to potentiate cell migration and neovascularization (for 2) an indicative that their application might be directed for initial tumor stages to avoid tumor invasion and metastization and opening a new avenue for complex 2 application in regenerative medicine. Interestingly, both complexes do not show toxicity in both in vivo models (CAM and zebrafish). Graphical abstract: [Figure not available: see fulltext.]

Esteves, C, Palma SICJ, Costa HMA, Alves C, Santos GMC, Ramou E, Carvalho AL, Alves V, Roque ACA.  2022.  Tackling Humidity with Designer Ionic Liquid-Based Gas Sensing Soft Materials, dec. Advanced Materials. 34:2107205., Number 8: John Wiley & Sons, Ltd AbstractPDFWebsite

Relative humidity is simultaneously a sensing target and a contaminant in gas and volatile organic compound (VOC) sensing systems, where strategies to control humidity interference are required. An unmet challenge is the creation of gas-sensitive materials where the response to humidity is controlled by the material itself. Here, humidity effects are controlled through the design of gelatin formulations in ionic liquids without and with liquid crystals as electrical and optical sensors, respectively. In this design, the anions [DCA]− and [Cl]− of room temperature ionic liquids from the 1-butyl-3-methylimidazolium family tailor the response to humidity and, subsequently, sensing of VOCs in dry and humid conditions. Due to the combined effect of the materials formulations and sensing mechanisms, changing the anion from [DCA]− to the much more hygroscopic [Cl]−, leads to stronger electrical responses and much weaker optical responses to humidity. Thus, either humidity sensors or humidity-tolerant VOC sensors that do not require sample preconditioning or signal processing to correct humidity impact are obtained. With the wide spread of 3D- and 4D-printing and intelligent devices, the monitoring and tuning of humidity in sustainable biobased materials offers excellent opportunities in e-nose sensing arrays and wearable devices compatible with operation at room conditions.

Pereira, HG, Sousa DG, Bradbury JS, Lourenço JM.  2022.  Automatic Generation of Contracts for Concurrent Java Programs, 8-9 Sep.. Atas do INForum 2022. ps22_-_contracts.pdf
Paquete, CM, Morgado L, Salgueiro CA, Louro RO.  2022.  Molecular Mechanisms of Microbial Extracellular Electron Transfer: The Importance of Multiheme Cytochromes, 2022-06-27. FBL. 27(6) AbstractWebsite

Extracellular electron transfer is a key metabolic process of many organismsthat enables them to exchange electrons with extracellular electrondonors/acceptors. The discovery of organisms with these abilities and theunderstanding of their electron transfer processes has become a priority for thescientific and industrial community, given the growing interest on the use ofthese organisms in sustainable biotechnological processes. For example, inbioelectrochemical systems electrochemical active organisms can exchangeelectrons with an electrode, allowing the production of energy and added-valuecompounds, among other processes. In these systems, electrochemical activeorganisms exchange electrons with an electrode through direct or indirectmechanisms, using, in most cases, multiheme cytochromes. In numerouselectroactive organisms, these proteins form a conductive pathway that allowselectrons produced from cellular metabolism to be transferred across the cellsurface for the reduction of an electrode, or vice-versa. Here, the mechanisms bywhich the most promising electroactive bacteria perform extracellular electrontransfer will be reviewed, emphasizing the proteins involved in these pathways.The ability of some of the organisms to perform bidirectional electron transferand the pathways used will also be highlighted.

Santos, MFA, Sciortino G, Correia I, Fernandes ACP, Santos-Silva T, Pisanu F, Garribba E, Pessoa JC.  2022.  Binding of VIVO2+, VIVOL, VIVOL2 and VVO2L Moieties to Proteins: X-ray/Theoretical Characterization and Biological Implications, 2022. Chemistry – A European JournalChemistry – A European Journal. 28(40):e202200105.: John Wiley & Sons, Ltd AbstractWebsite

Abstract Vanadium compounds have frequently been proposed as therapeutics, but their application has been hampered by the lack of information on the different V-containing species that may form and how these interact with blood and cell proteins, and with enzymes. Herein, we report several resolved crystal structures of lysozyme with bound VIVO2+ and VIVOL2+, where L=2,2?-bipyridine or 1,10-phenanthroline (phen), and of trypsin with VIVO(picolinato)2 and VVO2(phen)+ moieties. Computational studies complete the refinement and shed light on the relevant role of hydrophobic interactions, hydrogen bonds, and microsolvation in stabilizating the structure. Noteworthy is that the trypsin?VVO2(phen) and trypsin?VIVO(OH)(phen) adducts correspond to similar energies, thus suggesting a possible interconversion under physiological/biological conditions. The obtained data support the relevance of hydrolysis of VIV and VV complexes in the several types of binding established with proteins and the formation of different adducts that might contribute to their pharmacological action, and significantly widen our knowledge of vanadium?protein interactions.

Santos, AFM, Cruz C, Godinho MH, Dionísio M, Figueirinhas JL, Branco LC.  2022.  Synthesis and characterisation of ionic liquid crystals based on substituted pyridinium cations, 2022. Liquid CrystalsLiquid Crystals. :1-13.: Taylor & Francis AbstractWebsite
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Morgado, L, Salgueiro CA.  2022.  Elucidation of complex respiratory chains: a straightforward strategy to monitor electron transfer between cytochromes, 02. Metallomics. AbstractWebsite

{Cytochromes are electron transfer proteins essential in various biological systems, playing crucial roles in the respiratory chains of bacteria. These proteins are particularly abundant in electrogenic microorganisms and are responsible for the efficient delivery of electrons to the cells’ exterior. The capability of sending electron outside the cells open new avenues to be explored for emerging biotechnological applications in bioremediation, microbial electrosynthesis and bioenergy fields. To develop these applications, it is critical to identify the different redox partners and elucidate the stepwise electron transfer along the respiratory paths. However, investigating direct electron transfer events between proteins with identical features in nearly all spectroscopic techniques is extremely challenging. NMR spectroscopy offers the possibility to overcome this difficulty by analysing the alterations of the spectral signatures of each protein caused by electron exchange events. The uncrowded NMR spectral regions containing the heme resonances of the cytochromes display unique and distinct signatures in the reduced and oxidized states, which can be explored to monitor electron transfer within the redox complex. In this study, we present a strategy for a fast and straightforward monitorization of electron transfer between c-type cytochromes, using as model a triheme periplasmic cytochrome (PpcA) and a membrane associated monoheme cytochrome (OmcF) from the electrogenic bacterium Geobacter sulfurreducens. The comparison between the 1D 1H NMR spectra obtained for samples containing the two cytochromes and for samples containing the individual proteins clearly demonstrated a unidirectional electron transfer within the redox complex. This strategy provides a simple and straightforward means to elucidate complex biologic respiratory electron transfer chains.}

Reljic, S, Cuadrado-Collados C, Oliveira Jardim E, Farrando-Perez J, Martinez-Escandell M, Silvestre-Albero J.  2022.  Activated carbon materials with a rich surface chemistry prepared from L-cysteine amino acid. Fluid Phase Equilibria. 558(113446)
Reljic, S, Cuadrado-Collados C, Farrando-Perez J, Jardim EO, Martinez-Escandell M, Silvestre-Albero J.  2022.  Carbon-based monoliths with improved thermal and mechanical properties for methane storage. Fuel. 324(124753)
Faria, J, Dionísio B, Soares I, Baptista AC, Marques A, Gonçalves L, Bettencourt A, Baleizão C, Ferreira I.  2022.  Cellulose acetate fibres loaded with daptomycin for metal implant coatings. Carbohydrate Polymers. 276:118733.
da Rosa, RR, Silva PES, Saraiva DV, Kumar A, de Sousa AMP, Sebastião P, Fernandes SN, Godinho MH.  2022.  Cellulose Nanocrystal Aqueous Colloidal Suspensions: Evidence of Density Inversion at the Isotropic-liquid Crystal Phase Transition. Advanced Materials. n/a:2108227., Number n/a AbstractWebsite

Abstract The colloidal suspensions of aqueous cellulose nanocrystals (CNCs) are known to form liquid crystalline systems above certain critical concentrations. From an isotropic phase; tactoid formation; growth; and sedimentation have been determined as the genesis of a high-density cholesteric phase; which after drying; originates solid iridescent films. Herein; we report the coexistence of a liquid crystal upper phase and an isotropic bottom phase in CNC aqueous suspensions at isotropic-nematic phase separation for the first time. Furthermore; isotropic spindle-like domains are observed in the low-density liquid crystalline phase; and high-density liquid crystalline phases are also prepared. The CNCs isolated from the low- and high-density liquid crystalline phases are found to have similar average lengths; diameters; and surface charges. The existence of a liquid crystalline low-density phase is explained by the presence of air dissolved in the water present within the CNCs. The air dissolves out when the water solidifies into ice and remains within the CNCs. The self-adjustment of the cellulose chain conformation enables the entrapment of air within the CNCs and CNC buoyancy in aqueous suspensions. This article is protected by copyright. All rights reserved

Shlapa, Y, Solopan S, Sarnatskaya V, Siposova K, Garcarova I, Veltruska K, Timashkov I, Lykhova O, Kolesnik D, Musatov A, Nikolaev V, Belous A.  2022.  Cerium dioxide nanoparticles synthesized via precipitation at constant pH: Synthesis, physical-chemical and antioxidant properties. Colloids and Surfaces B: Biointerface. 220(112960 )
Teixeira, LR, Fernandes TM, Silva MA, Morgado L, Salgueiro CA.  2022.  Characterization of a novel cytochrome involved in Geobacter sulfurreducens’ electron harvesting pathways. Chemistry – A European Journal. n/a, Number n/a AbstractWebsite

Electron harvesting bacteria are key targets to develop microbial electrosynthesis technologies, which are valid alternatives for the production of value-added compounds without utilization of fossil fuels. Geobacter sulfurreducens, that is capable of donating and accepting electrons from electrodes, is one of the most promising electroactive bacteria. Its electron transfer mechanisms to electrodes have been progressively elucidated, however the electron harvesting pathways are still poorly understood. Previous studies showed that the periplasmic cytochromes PccH and GSU2515 are overexpressed in current-consuming G. sulfurreducens biofilms. PccH was characterized, though no putative partners have been identified. In this work, GSU2515 was characterized by complementary biophysical techniques and in silico simulations using the AlphaFold neural network. GSU2515 is a low-spin monoheme cytochrome with a disordered N-terminal region and an α-helical C-terminal domain harboring the heme group. The cytochrome undergoes a redox-linked heme axial ligand switch, with Met91 and His94 as distal axial ligand in the reduced and oxidized state, respectively. The reduction potential of the cytochrome is negative and is modulated by the pH in the physiological range: -78 mV at pH 6 and -113 mV at pH 7. Such pH-dependence coupled to the redox-linked switch of the axial ligand allows the cytochrome to drive a proton-coupled electron transfer step that is crucial to confer directionality to the respiratory chain. Biomolecular interactions and electron transfer experiments indicated that GSU2515 and PccH form a redox complex. Overall, the data obtained highlights for the first time how periplasmic proteins bridge the electron transfer between the outer and inner membrane in the electron harvesting pathways of G. sulfurreducens.

Cordas, CM, Nguyen GS, Valério GV, Jønsson M, Sóllner K, Aune I, Wentzel A, Moura JJG.  2022.  Discovery and characterization of a novel Dyp-type peroxidase from a marine actinobacterium isolated from Trondheim fjord, Norway. J Inorg Biochem. 226:111651.
Soares, Í, Faria J, Marques A, Ribeiro IAC, Baleizão C, Bettencourt A, Ferreira I, Baptista AC.  2022.  Drug Delivery from PCL/Chitosan Multilayer Coatings for Metallic Implants. ACS omega. 7:23096-23106.
Soares, Í, Faria J, Marques A, Ribeiro I, Baleizão C, Bettencourt A, Ferreira I, Baptista A.  2022.  Drug Delivery from PCL/Chitosan Multilayer Coatings for Metallic Implants. ACS Omega. 7(27):23096–23106.
Siposova, K, Huntosova V, Garcarova I, Shlapa Y, Timashkov I, Belous A, Musatov A.  2022.  Dual-Functional Antioxidant and Anti-amyloid Cerium Oxide Nanoparticles Fabricated by Controlled Synthesis in Water-Alcohol Solutions. Biomedicines. 10(942)
Figueiredo, J, Henriques MX, Catalão MJ, Pinheiro S, Narciso AR, Mesquita F, Saraiva BM, Carido M, Cabanes D, Pinho MG, Filipe SR.  2022.  Encapsulation of the septal cell wall protects Streptococcus pneumoniae from its major peptidoglycan hydrolase and host defenses. PLoS Pathogens. 18:e1010516.