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Submitted
Rodrigues, J, Cerqueira AFR, Sousa MG, Santos NF, Pimentel A, Fortunato E, da Cunha AF, Monteiro T, Costa FM.  Submitted.  {Exploring the potential of laser assisted flow deposition grown ZnO for photovoltaic applications}. Materials Chemistry and Physics. AbstractWebsite

Zinc oxide (ZnO) is a widely studied wide band gap semiconductor with applications in several fields, namely to enhance solar cells efficiency. Its ability to be grown in a wide variety of nanostructured morphologies, allowing the designing of the surface area architecture constitutes an important advantage over other semiconductors. Laser assisted flow deposition (LAFD) is a recently developed growth method, based on a vapour-solid mechanism, which proved to be a powerful approach in the production of ZnO micro/nanostructures with different morphologies as well as high crystallinity and optical quality. In the present work we report the use of the LAFD technique to grow functional ZnO nanostructures (nanoparticles and tetrapods) working as nano templates to improve the dye-sensitized solar cells (DSSCs) efficiency. The structural and morphological characterization of the as-grown ZnO crystals were performed by X-ray diffraction and electron microscopy, respectively, and the optical quality was assessed by photoluminescence spectroscopy. DSSCs were produced using a combination of these nanostructures, which were subsequently sensitized with N719 dye. An efficiency of ∼3{%} was achieved under simulated AM 1.5 illumination conditions for a dye loading time of 1 h.

Bassani, DM, Cucinotta F, Bohne C, Basilio N, Lemon C, Allain C, Sundstrom V, Campagna S, Rohacova J, Ketteler Y, Ryan STJ, Vos J, de Silva AP, Slota M.  Submitted.  {Light activated molecular machines and logic gates: general discussion}. {FARADAY DISCUSSIONS}. {185}:{399-411}. Abstract
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Santos, MM, Bastos P, Catela I, Zalewska K, Branco LC.  Submitted.  {Recent Advances of Metallocenes for Medicinal Chemistry}. {MINI-REVIEWS IN MEDICINAL CHEMISTRY}. {17}:{771-784}., Number {9} Abstract
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Carrera, GVSM, Jordao N, Santos MM, da Ponte MN, Branco LC.  Submitted.  {Reversible systems based on CO2, amino-acids and organic superbases}. {RSC ADVANCES}. {5}:{35564-35571}., Number {45} Abstract
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Pikramenou, Z, Weinstein J, Pan Q, Lewis F, Bassani DM, Wuerthner F, Moucheron C, Slota M, Diaz-Moscoso A, Karlsson J, Basilio N, Adams D, Scandola F, Bohne C, Lemon C, Campagna S, Rohacova J, Ohashi K, Ploetz P-A, Monti F, Kelly JM, Keane P, Gibson E, Lemercier G, Ruggi A, Cucinotta F, Gust D, Bradberry S, Vos J, Pistolis G, Mauro M, Tuite E, De Cola L, Ceroni P, Maneiro M, Galoppini E, Gunnlaugsson T.  Submitted.  {Self-organization of photo-active nanostructures: general discussion}. {FARADAY DISCUSSIONS}. {185}:{529-548}. Abstract
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Santos, L, Neto JP, Crespo A, Nunes D, Costa N, Fonseca IM, Barquinha P, Pereira L, Silva J, Martins R, Fortunato E.  Submitted.  {WO3 Nanoparticle-Based Conformable pH Sensor}. ACS APPLIED MATERIALS & INTERFACES. 6:12226–12234., Number 15 Abstract

\{pH is a vital physiological parameter that can be used for disease diagnosis and treatment as well as in monitoring other biological processes. Metal/metal oxide based pH sensors have several advantages regarding their reliability, miniaturization, and cost-effectiveness, which are critical characteristics for in vivo applications. In this work, WO3 nanoparticles were electrodeposited on flexible substrates over metal electrodes with a sensing area of 1 mm(2). These sensors show a sensitivity of -56.7 +/- 1.3 mV/pH, in a wide pH range of 9 to 5. A proof of concept is also demonstrated using a flexible reference electrode in solid electrolyte with a curved surface. A good balance between the performance parameters (sensitivity), the production costs, and simplicity of the sensors was accomplished, as required for wearable biomedical devices.\}

In Press
Santos, Â, Rodrigues B, Otero V, Vilarigues M.  In Press.  The colour of moving images: reconstructing Winsor & Newton 19th-century watercolours for Magic Lantern glass painting. 8th Interim Meeting of the ICOM-CC Art Technological Source Research Working Group. , Cologne, Germany, 26-27 September 2019.
Simoes, SG, Dias L, Gouveia JP, Seixas J, de Miglio R, Gargiulo M, Long G, Giannakidis G.  In Press.  InSmart – A methodology for combining modelling with stakeholder input towards EU cities decarbonisation.. Journal of Cleaner Production.
2026
Fatima, A, Saif HM, Nascimento FX, Pawlowski S, Crespo JG.  2026.  Selective lithium recovery using bacterial cellulose acetate membranes: toward green recycling of spent Li-ion batteries. Journal of Membrane Science. 737:124776. AbstractWebsite

The global transition to electric vehicles and renewable energy systems has heightened the demand for lithium-ion batteries (LIBs), creating an urgent need for sustainable battery recycling methods to recover critical raw materials, including lithium. Lithium-selective cation-exchange polymeric membranes are one of the emerging options to achieve such lithium recycling. To make this change even greener, instead of using traditional fossil-origin polymers to produce membranes, this research employed bacterial cellulose acetate (BCA), a bio-derived and eco-friendly polymer. By adding 5 wt% N-methyl-N-propylpiperidinium bis(trifluoromethanesulfonyl)imide (PP13–TFSI), an ionic liquid (IL) which is a plasticizer and lithium-ion conductor, and 20 wt% hydrogen manganese oxide (HMO), which is a lithium-selective inorganic filler, four BCA-based membranes (BCA, BCA-IL, BCA-HMO and BCA-IL-HMO) were prepared. The membranes were extensively characterized for their morphology, thermal stability, chemical, and mechanical properties. Subsequently, they were tested in diffusion cells (without applying any external driving force) for ionic conductivity, lithium selectivity, and lithium flux using binary salt mixtures and synthetic LIB leachate. The BCA-IL membrane outperformed other BCA-based membranes in terms of separation factors, achieving values of 10.50 (Li+/Mn2+), 11.75 (Li+/Ni2+), and 10.95 (Li+/Co2+) with a lithium flux of 0.12 mol m−2 h−1 when processing synthetic LIB leachate. Under the same conditions, the BCA-HMO membranes exhibited a higher lithium flux (0.51 mol m−2 h−1) but with lower separation factor values of 3.39 (Li+/Mn2+), 3.62 (Li+/Ni2+), and 3.36 (Li+/Co2+). The use of plant-derived cellulose acetate (CA) as an alternative to BCA was also assessed; however, despite promising ideal lithium selectivity values (for example, 112 for Li+/Ni2+ in the case of CA-HMO membrane), their conductivity was up to two orders of magnitude lower than that of BCA-based membranes. All these findings highlight the promising potential of BCA-based membranes for lithium recovery from lithium-ion battery leachates.

2025
Silva, M, Santos J, Sousa F, Malta J, Almeida PL, Godinho MH, Almeida APC.  2025.  Nature Inspired Cellulose-based Networks for Moisture Sensors. Photonics West. , San Francisco, USA: SPIE
Almeida, A, Turner DL, Silva MA, Salgueiro CA.  2025.  New insights in uranium bioremediation by cytochromes of the bacterium G. uraniireducens. Journal of Biological Chemistry. 301(2):108090. AbstractWebsite

The bacterium Geotalea uraniireducens, commonly found in uranium-contaminated environments, plays a key role in bioremediation strategies by converting the soluble hexavalent form of uranium (UVI) into less soluble forms (e.g. UIV.). While most of the reduction and concomitant precipitation of uranium occur outside the cells, there have been reports of important reduction processes taking place in the periplasm. In any case, the triheme periplasmic cytochromes are crucial players, either by ensuring an effective interface between the cell´s interior and exterior or by directly participating in the reduction of the metal. Therefore, understanding the functional mechanism of the highly abundant G. uraniireducens’ triheme cytochromes is crucial to assist the elucidation on the respiratory pathways in this bacterium. In this work, a detailed functional characterization of the triheme cytochromes PpcA and PpcB from G. uraniireducens was conducted using NMR and visible spectroscopy techniques. Despite sharing high amino acid sequence and structural homology with their counterparts from G. sulfurreducens, the results obtained showed that the heme reduction potential values are less negative, the order of oxidation of the hemes is distinct, and the redox and redox-Bohr network of interactions revealed unprecedented functional mechanisms of the G. uraniireducens cytochromes. In these cytochromes, the reduction potential values of the three heme groups are much more similar, hence covering a narrow range of values, features that facilitate the directional electron flow from the inner membrane, thereby favouring the optimal reduction of uranium.

Sousa, F, Malta JF, Almeida APC.  2025.  When Cellulose Moves: Smart Sensors and Actuators. Advanced Materials Technologies. :e01426.
Saif, HM, Ferrández-Gómez B, Alves VD, Huertas RM, Alemany-Molina G, Viegas A, Morallón E, Cazorla-Amorós D, Crespo JG, Pawlowski S.  2025.  Activated carbons for flow electrode capacitive deionization (FCDI) – Morphological, electrochemical and rheological analysis. Desalination. 602:118638. AbstractWebsite

Flow electrode capacitive deionization (FCDI) is a desalination technology employing flowable carbon slurries to remove salt from an influent through the electro-sorption of ions at the surface of pores of activated carbon particles. This study presents an extensive morphological, electrochemical and rheological analysis of flow electrodes prepared using commercial (YP50F, YP80F, Norit, PAC) and lab-synthesized (KUA, PAC-OX) activated carbons. Simultaneous optimization of particle size, surface area, and surface chemistry of activated carbons is essential to enhance desalination efficiency in FCDI applications. The lab-made highly microporous activated carbon (KUA), prepared from a Spanish anthracite, exhibited a remarkably high specific surface area ( 2800 m2/g) but required first a particle size reduction through ball milling (from 56 μm to 12 μm) for the respective flow electrodes to achieve flowability. The slurry of milled fine KUA (designated as KUAF) shows a specific capacitance of 55 F/g, a 38-fold increase compared to its pristine form. The KUA-F flow electrode also achieved a maximum salt adsorption capacity of 185 mg/g, outperforming the leading commercial alternative (YP80F) by 26 %. The FCDI cell with the KUA-F flow electrode exhibited a desalination efficiency of 79 % at 15 wt% loading, surpassing YP80F by 29 %. In contrast, using PAC-OX (oxidized form of PAC), despite increasing oxygen functional groups and with relatively higher specific surface area, led only to a 2 % improvement in desalination performance, highlighting that oxidation alone at larger particle sizes and broader distribution is insufficient.

Saif, HM, Crespo JG, Pawlowski S.  2025.  Can 3D-printed flow electrode gaskets replace CNC-milled graphite current collectors in flow capacitive deionization? Desalination. 597:118362. AbstractWebsite

As billions of people suffer from water scarcity, finding sustainable water resources is imperative. Flow capacitive deionization (FCDI) is a highly promising desalination process that can produce clean water from saline streams such as brackish and seawater. Conventional FCDI systems employ Computerised Numerical Control (CNC)-milled graphite plates that serve as current collectors and flow electrode channels. However, they have drawbacks such as high manufacturing costs, waste generation, and the difficulty of producing complex geometries required for efficient flow electrode mixing. Here, we successfully demonstrate that 3D-printed flow electrode gaskets, made of non-conductive polyethylene terephthalate glycol (PET-G) or a carbon black-infused conductive polylactic acid (PLA), are viable alternatives to traditional graphite plates. In specific cases, the desalination and energy efficiency in FCDI cells with 3D-printed conductive gaskets were even 25 % and 10 % higher, respectively, compared to traditional CNC-milled current collectors. The transition to 3D printing offers notable benefits, such as the competence to fabricate complex designs that enhance internal mixing and charge percolation. This innovation represents a change of paradigm in the way FCDI cells should be designed and manufactured, using additive manufacturing, which represents an efficient, scalable, and cost-effective substitute for the conventional approach, contributing therefore for the advancement of FCDI desalination technology.

Fernandes, MV, Antunes JMA, Salgueiro CA, Morgado L.  2025.  Characterization of CbcS from Geobacter sulfurreducens' Cbc4 complex: a putative novel respiratory pathway. Journal of Inorganic Biochemistry. :113097. AbstractWebsite

Electroactive bacteria mediate electron exchange with external compounds through a process known as extracellular electron transfer (EET). A key step in EET is the transfer of electrons from the menaquinone pool to inner membrane-associated quinol-cytochrome c oxidoreductase complexes, which subsequently relay electrons to periplasmic redox partners. Gene-knockout and proteomic analyses have identified several critical components involved in EET in Geobacter sulfurreducens, including six inner membrane oxidoreductase gene clusters. Of these, three – CbcL, ImcH, and CbcBA - have been linked to specific respiratory pathways depending on the redox potential of the terminal electron acceptor. Cbc4 is one of the other inner membrane oxidoreductase complexes and is composed by three domains: a membrane-anchored tetraheme c-type cytochrome (CbcS), an iron–sulfur protein containing four [4Fe4S] clusters (CbcT), and an integral membrane subunit (CbcU). In this study, the sequence and AlphaFold model of CbcS were analyzed and its cytochrome domain was produced, and structurally and functionally characterized using Nuclear Magnetic Resonance spectroscopy. CbcS has four bis-histidine low-spin hemes and the structure of its hemecore is homologous to CymA and NrfH from Shewanella and Desulfovibrio species, respectively, despite differences on its axial ligands. Potentiometric titrations showed that the redox active window of CbcS overlaps with those of its putative redox partners of the triheme periplasmic cytochrome family (PpcA-E). However, NMR-monitored electron transfer experiments revealed that CbcS can transfer electrons to PpcA through the heme group closer to the C-terminal (heme IV). Together, these findings provide insights on a putative new respiratory pathway in G. sulfurreducens.

Gabirondo, E, Saif HM, Alves VD, Crespo JG, Tomé LC, Pawlowski S.  2025.  Deep eutectic solvent flow electrodes for high-voltage desalination via flow electrode capacitive deionisation. Desalination. 614:119218. AbstractWebsite

This study pioneers the application of deep eutectic solvents (DES) as electrolytes in flow electrode capacitive deionisation (FCDI) desalination systems, providing a novel and improved alternative to aqueous flow electrodes. The deep eutectic solvent, choline chloride-urea (ChCl-U), was selected for its wide electrochemical stability window, allowing voltages exceeding 1.23 V, which is the limit for aqueous flow electrodes. The effect of water doping on the viscosity and performance of the DES flow electrodes was also investigated. Cyclic voltammetry confirmed the electrochemical stability, while rheological and electrochemical impedance spectroscopy revealed that the addition of water reduced the viscosity and enhanced the conductivity of ChCl-U, making it suitable for use as an electrolyte in FCDI. Desalination experiments were performed within a potential range of up to 2.2 V. The ChCl-U flow electrode, containing 20 wt% water and 10 wt% activated carbon, achieved the best balance between desalination efficiency (83 %), desalination rate (0.17 mg/cm2.min), and effluent quality. Furthermore, 1H NMR analysis confirmed the absence of traces of the deep eutectic solvent in the dilute stream. The results highlight the potential of DES flow electrodes to enhance desalination processes by enabling higher operational voltages and improved performance, thereby paving the way for more efficient FCDI desalination systems.

Saif, HM, Crespo JG, Pawlowski S.  2025.  How should flow electrode capacitive deionization (FCDI) be operated to achieve efficient desalination and scalability? Desalination. 606:118769. AbstractWebsite

Flow electrode capacitive deionization (FCDI) is an emerging desalination technology that utilises flowable electrodes and can be operated in diverse configuration modes. This study provides a systematic assessment of the three main configuration arrangements under a voltage range between 0.8 and 2.0 V: isolated closed-cycle (ICC), short-circuited closed-cycle (SCC), and single-cycle with separate concentrate chamber (SCSC). The ICC mode shows the highest specific energy consumption (up to 72.02 Wh/mol of NaCl at 2.0 V) and low operational stability manifested by extreme alteration of pH in the electrode compartments (anode compartment pH down to 2.17; cathode compartment pH up to 12.08), which leads to the need for frequent electrode regeneration or replacement. In comparison to the ICC mode, the SCC mode exhibited superior performance, with a 44.3 % increase in salt removal and up to 3.95 % higher current efficiency at 2.0 V, due to the regeneration of electrodes through short-circuiting, as it reduces the electrical resistance and minimises the side reactions. The SCSC mode emerged as the most stable and reliable among the three, with uniform current and conductivity profiles, as well as minimal pH fluctuations, which is critical to produce treated water within desired quality standards. These findings highlight the promising potential of SCSC mode as an optimal configuration for scalable, continuous and energy-efficient FCDI systems, providing a balanced solution for long-term desalination with reduced operational complexity and costs.

Purpura, G, Saif HM, Culcasi A, Pawlowski S, Crespo JG, Cipollina A.  2025.  Modelling selective lithium recovery from brines via membrane flow electrode capacitive de-ionization. Separation and Purification Technology. 364:132400. AbstractWebsite

The recent growing demand for lithium worldwide, led by the Li-ion battery market, has sparked research into alternative sources of this material. In this context, selective lithium recovery from concentrated brines represents a sustainable and economical alternative to lithium mining activities. In this work, we developed a mathematical model of the recently implemented Lithium Membrane Flow Electrode Capacitive De-Ionization (Li-MFCDI) process, used to selectively extract lithium from a synthetic geothermal brine. The model was validated against the available experimental data and was used to perform a comprehensive parametric analysis. The model predicts the effects of the applied voltage, flow rates, and the adopted membranes on the process performance. These findings highlight the importance of the membrane conductivity-selectivity trade-off for process productivity. Furthermore, this simulation tool will substantially contribute to the development of this novel technology.

Saif, HM, Gebretatios AG, Huertas RM, Crespo JG, Pawlowski S.  2025.  Single solvent synthesis of lithium-selective hydrogen manganese oxide (HMO)-based mixed matrix membranes. Green Chemical Engineering. AbstractWebsite

The rising lithium-ion battery market drives lithium demand and requires efficient and selective lithium recovery methods from aqueous sources. Membrane technologies can address environmental and inherent efficiency issues in conventional lithium extraction methods. This study presents the synthesis of novel lithium-selective mixed matrix membranes (MMMs) by integrating 0–30 wt% of a lithium selective filler named hydrogen manganese oxide (HMO) into a sulfonated polyethersulfone (SPES)-Nafion polymer matrix. The membranes were produced by casting and thoroughly examined to assess their chemical, physical, morphological, thermal, and mechanical characteristics. The transport of lithium across membranes was evaluated in diffusion and electro-diffusion studies. The membrane containing 20 wt% of HMO exhibited the highest ideal selectivity values, which were 1.05 for Li+/K+, 1.20 for Li+/Na+, and 13.36 for Li+/Mg2+; and more than 97% increase in lithium-ion conductivity when compared with the control membrane without HMO. In diffusion experiments, the binary separation factors for Li+/K+, Li+/Na+, and Li+/Mg2+ were 0.71, 1.52, and 11.83, respectively, while under electro-diffusion conditions, the corresponding values were 0.82, 1.55, and 9.88. Above 20 wt% of HMO, membranes lose their separation capacity as HMO aggregates inside the membrane structure. The higher selectivity of membranes towards Li+ in the presence of Mg2+ is due to magnesium's larger hydrated radius and higher hydration energy compared to lithium. Overall, the prepared membranes demonstrated a promising potential for green lithium recovery. This study facilitates the advancement of sustainable lithium-selective MMM synthesis.

Royo, B, Lenis-Rojas {OA}, Roma C, Carvalho B, Andrade V, Friães S, Cabezas-Sain P, Fernández {JAA}, Vila {SF}, Arana {AJ}, Sanchez L, Baptista {PV}, Gomes {CSB}, Fernandes {AR}.  2025.  Triazole-Derived Ruthenium(II) Complexes as Novel Candidates for Cancer Therapy. ChemPlusChem. :e202400775.: Wiley | Wiley-VCH Verlag Abstract

The first examples of Ru(II) h6-arene (benzene and p-cymene) complexes containing a bidentate triazolylidene-triazolide ligand have been prepared and fully characterized. Their antiproliferative effect has been investigated against tumour cells A2780 (ovarian carcinoma), HCT116 (colorectal carcinoma), and HCT116dox (colorectal carcinoma resistant to doxorubicin), and in human dermal fibroblasts. The Ru complex bearing the p-cymene arene group exhibited a stronger antiproliferative effect across all tested cell lines, while the benzene-containing complex displayed higher selectivity toward tumor cells. Both complexes induced apoptosis, likely through ROS production (in the benzene complex), and inhibited tumorigenic processes, including cell migration and angiogenesis. In zebrafish models, they showed strong selectivity for cancer cells with minimal toxicity to healthy cells, effectively reducing the proliferation of HCT116 colorectal cancer cells. This study provides the first in vivo evidence of the anticancer potential of Ru triazolylidenes in zebrafish models.

2024
Sarrato, J, Raimundo B, Domingues L, Filipe SR, Lima CJ, Branco PS.  2024.  Synthesis of inverse push-pull coumarin dyes and their application as solvatochromic probes and labelling agents for bacterial cell membranes, SEP. DYES AND PIGMENTS. 228 Abstract
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Portela, PC, Shipps CC, Shen C, Srikanth V, Salgueiro CA, Malvankar NS.  2024.  Widespread extracellular electron transfer pathways for charging microbial cytochrome OmcS nanowires via periplasmic cytochromes PpcABCDE, 2024. Nature Communications. 15(1):2434. AbstractWebsite

Extracellular electron transfer (EET) via microbial nanowires drives globally-important environmental processes and biotechnological applications for bioenergy, bioremediation, and bioelectronics. Due to highly-redundant and complex EET pathways, it is unclear how microbes wire electrons rapidly (>106 s−1) from the inner-membrane through outer-surface nanowires directly to an external environment despite a crowded periplasm and slow (<105 s−1) electron diffusion among periplasmic cytochromes. Here, we show that Geobacter sulfurreducens periplasmic cytochromes PpcABCDE inject electrons directly into OmcS nanowires by binding transiently with differing efficiencies, with the least-abundant cytochrome (PpcC) showing the highest efficiency. Remarkably, this defined nanowire-charging pathway is evolutionarily conserved in phylogenetically-diverse bacteria capable of EET. OmcS heme reduction potentials are within 200 mV of each other, with a midpoint 82 mV-higher than reported previously. This could explain efficient EET over micrometres at ultrafast (<200 fs) rates with negligible energy loss. Engineering this minimal nanowire-charging pathway may yield microbial chassis with improved performance.

Portela, PC, Silva MA, Almeida A, Damas GF, Salgueiro CA.  2024.  Tweaking the redox properties of PpcA from Geobacter metallireducens with protein engineering, 12. Biochemical Journal. 481(24):2017-2036. AbstractWebsite

Geobacter’s unique ability to perform extracellular electron transfer (EET) to electrodes in Microbial Fuel Cells (MFCs) has sparked the implementation of sustainable production of electrical energy. However, the electrochemical performance of Geobacter’s biofilms in MFCs remains challenging to implement industrially. Multiple approaches are being investigated to enhance MFC technologies. Protein engineering of multihaem cytochromes, key components of Geobacter’s EET pathways, can, conceivably, be pursued to improve the EET chain. The periplasmic cytochrome PpcA bridges ET from the inner to the outer membrane and its deletion impairs this crucial step. The functional characterisation of PpcA homologs from G. sulfurreducens (Gs) and G. metallireducens (Gm) revealed a significantly different redox behaviour even though they only differ by thirteen amino acids. In a previous study, we found that the single replacement of a tryptophan residue by methionine (W45M) in PpcAGm shifted the reduction potential value 33% towards that of PpcAGs. In this work, we expanded our investigation to include other non-conserved residues by conducting five mutation rounds. We identified the most relevant residues controlling the redox properties of PpcAGm. With just four mutations (K19, G25, N26, W45) the reduction potential value of PpcAGm was shifted 71% toward that of PpcAGs. Additionally, in the quadruple mutant, it was possible to replicate the haem oxidation order and the functional mechanisms of PpcAGs, which differ from those in PpcAGm. Overall, the mutants exhibit diverse redox and functional mechanisms that could be explored as a library for the future design of minimal, synthetic, ET chains in Geobacter.

Saif, HM, Gebregeorgis TH, Crespo JG, Pawlowski S.  2024.  The influence of flow electrode channel design on flow capacitive deionization performance: Experimental and CFD modelling insights. Desalination. 578:117452. AbstractWebsite

Flow capacitive deionization (FCDI) is an emerging desalination technology at which flow electrodes (shear-thinning flowable carbon slurries) are used to remove ions from saline water. The geometry of flow electrode channels, which provide the path and ensure the distribution and mixing of the flow electrodes, is one of the most important aspects to be optimized. This work presents experimental and computational fluid dynamics (CFD) modelling analysis of the influence of the geometry of flow electrode channels on FCDI performance. Flow electrode gaskets (with open, serpentine (short) horizontal and serpentine (long) vertical channels) were 3D printed using a polyethylene terephthalate glycol (PET-G) filament. The FCDI cell with a vertical serpentine flow electrode channel exhibited the poorest performance due to channel blockage by carbon particles, while the best results were achieved with a horizontal serpentine flow electrode channel. CFD simulations aided in understanding this behaviour by showing that the channel geometry strongly affects the local shear rate, and thus the local viscosity of flow electrodes. Thus, it is recommended to design channels that induce flow disturbance aiming for increasing the shear rate and hence reducing flow electrode viscosity, therefore promoting their flowability and reducing clogging chances.

Mota, C, Webster M, Saidi M, Kapp U, Zubieta C, Giachin G, Manso JA, de Sanctis D.  2024.  Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539. bioRxiv. : Cold Spring Harbor Laboratory AbstractWebsite

The accumulation of manganese ions is crucial for scavenging reactive oxygen species (ROS) and protecting the proteome of Deinococcus radiodurans (Dr). However, metal homeostasis still needs to be tightly regulated to avoid toxicity. DR2539, a dimeric transcription regulator, plays a key role in Dr manganese homeostasis. Despite comprising three well-conserved domains: a DNA binding domain, a dimerization domain, and an ancillary domain, both the metal ion activation mechanism and the DNA recognition mechanism remain elusive. In this study, we present biophysical analyses and the structure of the dimerization and DNA binding domains of DR2539 in its holo form and in complex with the 21 bp pseudo-palindromic repeat of the dr1709 promotor region. These findings shed light into the activation and recognition mechanisms. The dimer presents eight manganese binding sites that induce structural conformations essential for DNA binding. The analysis of the protein-DNA interfaces elucidates the significance of Tyr59 and helix H3 sequence in the interaction with the DNA. Finally, the structure in solution as determined by small angle X-ray scattering experiments and supported by AlphaFold modelling provides a model illustrating the conformational changes induced upon metal binding.Competing Interest StatementThe authors have declared no competing interest.