Publications

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2024
Evaluation of miR-155 silencing using a molecular beacon in human lung adenocarcinoma cell line, Alexandre, Daniela, Fernandes {Alexandra R. }, Baptista {Pedro V. }, and Cruz Carla , Talanta, jul, Volume 274, (2024) Abstract

Lung cancer (LC) is a leading cause of global cancer-related deaths, highlighting the development of innovative methods for biomarker detection improving the early diagnostics. microRNAs (miRs) alterations are known to be involved in the initiation and progression of human cancers and can act as biomarkers for diagnostics and treatment. Herein, we develop the application of molecular beacon (MB) technology to monitor miR-155-3p expression in human lung adenocarcinoma A549 cells without complementary DNA synthesis, amplification, or expensive reagents. Furthermore, we produced gold nanoparticles (AuNPs) for delivering antisense oligonucleotides into A549 cells to reduce miR-155-3p expression, which was subsequently detectable using the MB. The MB was designed and structural characterized by Förster Resonance Energy Transfer (FRET)-melting, Circular Dichroism (CD), Nuclear magnetic resonance (NMR), and fluorometric experiments, and then the hybridization conditions were optimized for an in vitro approach involving the detection of miR-155-3p in total RNA extracted from A549 cell line. The expression profile of miR-155-3p was obtained by RT-qPCR. The results demonstrated that MB was properly designed and showed efficacy in targeting miR-155-3p. Furthermore, a limit of detection down to nanomolar concentration was achieved and the specificity of the biosensor was proved. Moreover, the self-assembly of ASOs with AuNPs exhibited exceptional target specificity, effectively silencing miR-155-3p. Notably, compared to lipid-based transfection agent, AuNPs displayed superior silencing efficiency. We highlighted the ability of MB to detect changes in the target gene expression after gene silencing. Overall, this innovative approach represents a promising tool for detecting various biomarkers at the same time, with potential applications in clinical settings.

Exploiting Co(III)-Cyclopentadienyl Complexes To Develop Anticancer Agents, {Franco Machado}, João, Cordeiro Sandra, Duarte {Joana N. }, Costa {Paulo J. }, Mendes {Paulo J. }, Garcia {Maria Helena}, Baptista {Pedro V. }, Fernandes {Alexandra R. }, and Morais {Tânia S. } , Inorganic Chemistry, apr, Volume 63, Number 13, p.5783–5804, (2024) Abstract

In recent years, organometallic complexes have attracted much attention as anticancer therapeutics aiming at overcoming the limitations of platinum drugs that are currently marketed. Still, the development of half-sandwich organometallic cobalt complexes remains scarcely explored. Four new cobalt(III)-cyclopentadienyl complexes containing N,N-heteroaromatic bidentate, and phosphane ligands were synthesized and fully characterized by elemental analysis, spectroscopic techniques, and DFT methods. The cytotoxicity of all complexes was determined in vitro by the MTS assay in colorectal (HCT116), ovarian (A2780), and breast (MDA-MB-231 and MCF-7) human cancer cell lines and in a healthy human cell line (fibroblasts). The complexes showed high cytotoxicity in cancer cell lines, mostly due to ROS production, apoptosis, autophagy induction, and disruption of the mitochondrial membrane. Also, these complexes were shown to be nontoxic in vivo in an ex ovo chick embryo yolk sac membrane (YSM) assay.

Effect of mono- and dinuclear thiosemicarbazone platinacycles in the proliferation of a colorectal carcinoma cell line, Reigosa-Chamorro, Francisco, Cordeiro Sandra, Pereira Teresa} {M., Filipe Beatriz, Baptista {Pedro V. }, Fernandes {Alexandra R. }, and Vila {José M. } , Dalton Transactions, (2024) Abstract

Herein, we describe the synthesis and characterization of a series of thiosemicarbazone platinacycles. Their activity towards HCT116 and A2780 cancer cell lines as well as normal fibroblasts was explored and conclusions about the influence of their structures were drawn based on the results. Ligands L1-3, tetranuclear compounds [Pt(L1-3)]4, [Pt(L1-3)(PPh3)], and [Pt(L1-L3)2{Ph2P(CH2)4PPh2}], and phosphine derivatives, were deemed unpromising owing to their lack of activity. However, mono-coordinated diphosphine complexes [Pt(L1-L3)(Ph2PCH2PPh2-P)] showed high selectivity and low IC50 values, and their antiproliferative activity was further studied. The three studied derivatives 3a, 3b and 3c showed a fast internalization of HCT116 colorectal cancer cells with similar IC50 values, which induced a depolarization of mitochondrial membrane potential, with the subsequent triggering of apoptosis and autophagy in the case of 3c. In the case of compounds 3a and 3b, cell death mechanisms (extrinsic and intrinsic apoptosis, respectively) were triggered via the induction of reactive oxygen species (ROS). The three compounds were not toxic to a chicken embryo in vivo (after 48 h), and, importantly, showed an anti-angiogenic potential after exposure to the IC50 of compounds 3a, 3b and 3c.

2023
Epidermal growth factor alters silica nanoparticle uptake and improves gold-nanoparticle-mediated gene silencing in A549 cells, Susnik, Eva, Bazzoni Amelie, Taladriz-Blanco Patricia, Balog Sandor, Moreno-Echeverri {Aura Maria}, Glaubitz Christina, {Brito Oliveira} Beatriz, Ferreira Daniela, {Viana Baptista} Pedro, Petri-Fink Alke, and Rothen-Rutishauser Barbara , Frontiers in Nanotechnology, jul, Volume 5, (2023) Abstract

Introduction: Delivery of therapeutic nanoparticles (NPs) to cancer cells represents a promising approach for biomedical applications. A key challenge for nanotechnology translation from the bench to the bedside is the low amount of administered NPs dose that effectively enters target cells. To improve NPs delivery, several studies proposed NPs conjugation with ligands, which specifically deliver NPs to target cells via receptor binding. One such example is epidermal growth factor (EGF), a peptide involved in cell signaling pathways that control cell division by binding to epidermal growth factor receptor (EGFR). However, very few studies assessed the influence of EGF present in the cell environment, on the cellular uptake of NPs. Methods: We tested if the stimulation of EGFR-expressing lung carcinomacells A549 with EGF affects the uptake of 59 nm and 422 nm silica (SiO2) NPs. Additionally, we investigated whether the uptake enhancement can be achieved with gold NPs, suitable to downregulate the expression of cancer oncogene c-MYC. Results: Our findings show that EGF binding to its receptor results in receptor autophosphorylation and initiate signaling pathways, leading to enhanced endocytosis of 59 nm SiO2 NPs, but not 422 nm SiO2 NPs. Additionally, we demonstrated an enhanced gold (Au) NPs endocytosis and subsequently a higher downregulation of c-MYC. Discussion: These findings contribute to a better understanding of NPs uptake in the presence of EGF and that is a promising approach for improved NPs delivery.

Engineering gold nanoparticles for molecular diagnostics and biosensing, Oliveira, {Beatriz B. }, Ferreira Daniela, Fernandes {Alexandra R. }, and Baptista {Pedro Viana} , Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology, feb, Volume 15, Number 1, (2023) Abstract

Advances in nanotechnology and medical science have spurred the development of engineered nanomaterials and nanoparticles with particular focus on their applications in biomedicine. In particular, gold nanoparticles (AuNPs) have been the focus of great interest, due to their exquisite intrinsic properties, such as ease of synthesis and surface functionalization, tunable size and shape, lack of acute toxicity and favorable optical, electronic, and physicochemical features, which possess great value for application in biodetection and diagnostics purposes, including molecular sensing, photoimaging, and application under the form of portable and simple biosensors (e.g., lateral flow immunoassays that have been extensively exploited during the current COVID-19 pandemic). We shall discuss the main properties of AuNPs, their synthesis and conjugation to biorecognition moieties, and the current trends in sensing and detection in biomedicine and diagnostics. This article is categorized under: Diagnostic Tools > Biosensing Diagnostic Tools > In Vitro Nanoparticle-Based Sensing Diagnostic Tools > In Vivo Nanodiagnostics and Imaging.

Exploring RAB11A Pathway to Hinder Chronic Myeloid Leukemia-Induced Angiogenesis In Vivo, Roma-Rodrigues, Catarina, Fernandes {Alexandra R. }, and Baptista {Pedro V. } , Pharmaceutics, feb, Volume 15, Number 3, (2023) Abstract

Neoangiogenesis is generally correlated with poor prognosis, due to the promotion of cancer cell growth, invasion and metastasis. The progression of chronic myeloid leukemia (CML) is frequently associated with an increased vascular density in bone marrow. From a molecular point of view, the small GTP-binding protein Rab11a, involved in the endosomal slow recycling pathway, has been shown to play a crucial role for the neoangiogenic process at the bone marrow of CML patients, by controlling the secretion of exosomes by CML cells, and by regulating the recycling of vascular endothelial factor receptors. The angiogenic potential of exosomes secreted by the CML cell line K562 has been previously observed using the chorioallantoic membrane (CAM) model. Herein, gold nanoparticles (AuNPs) were functionalized with an anti-RAB11A oligonucleotide (AuNP@RAB11A) to downregulate RAB11A mRNA in K562 cell line which showed a 40% silencing of the mRNA after 6 h and 14% silencing of the protein after 12 h. Then, using the in vivo CAM model, these exosomes secreted by AuNP@RAB11A incubated K562 did not present the angiogenic potential of those secreted from untreated K562 cells. These results demonstrate the relevance of Rab11 for the neoangiogenesis mediated by tumor exosomes, whose deleterious effect may be counteracted via targeted silencing of these crucial genes; thus, decreasing the number of pro-tumoral exosomes at the tumor microenvironment.

2022
Endogenous Fluorescent Proteins in the Mucus of an Intertidal Polychaeta: Clues for Biotechnology, Rodrigo, {Ana P. }, Lopes {Ana Catarina}, Pereira Ricardo, Anjo {Sandra I. }, Manadas Bruno, Grosso {Ana R. }, Baptista {Pedro V. }, Fernandes {Alexandra R. }, and Costa {Pedro M. } , Marine Drugs, mar, Volume 20, Number 4, (2022) Abstract

The vast ocean holds many unexplored organisms with unique adaptive features that enable them to thrive in their environment. The secretion of fluorescent proteins is one of them, with reports on the presence of such compounds in marine annelids being scarce. The intertidal Eulalia sp. is an example. The worm secretes copious amounts of mucus, that when purified and concentrated extracts, yield strong fluorescence under UV light. Emission has two main maxima, at 400 nm and at 500 nm, with the latter responsible for the blue–greenish fluorescence. Combining proteomics and transcriptomics techniques, we identified ubiquitin, peroxiredoxin, and 14-3-3 protein as key elements in the mucus. Fluorescence was found to be mainly modulated by redox status and pH, being consistently upheld in extracts prepared in Tris-HCl buffer with reducing agent at pH 7 and excited at 330 nm. One of the proteins associated with the fluorescent signal was localized in secretory cells in the pharynx. The results indicate that the secretion of fluorescent proteinaceous complexes can be an important defense against UV for this dweller. Additionally, the internalization of fluorescent complexes by ovarian cancer cells and modulation of fluorescence of redox status bears important considerations for biotechnological application of mucus components as markers.

Editorial: Rational drug design of metal complexes for cancer therapy, Morais, {Tânia S. }, Fernandes {Alexandra R. }, Baptista {Pedro V. }, and Gambino Dinorah , Frontiers in Chemistry, Volume 10, (2022) Abstract
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2021
Exploiting the antiproliferative potential of spiropyrazoline oxindoles in a human ovarian cancer cell line, Raposo, {Luís R. }, Silva {Ana Rute}, Silva Dário, Roma-Rodrigues Catarina, Espadinha Margarida, Baptista {Pedro V. }, Santos {Maria M. M. }, and Fernandes {Alexandra R. } , Bioorganic and Medicinal Chemistry, jan, Volume 30, (2021) Abstract

Cancer is still one of the deadliest diseases worldwide despite the efforts in its early detection and treatment strategies. However, most chemotherapeutic agents still present side effects in normal tissues and acquired resistance that limit their efficacy. Spiropyrazoline oxindoles might be good alternatives as they have shown antiproliferative activity in human breast and colon cancer cell lines, without eliciting cytotoxicity in healthy cells. However, their potential for ovarian cancer was never tested. In this work, the antiproliferative activity of five spiropyrazoline oxindoles was assessed in ovarian cancer cells A2780 and the biological targets and mechanism of action of the most promising compound evaluated. Compound 1a showed the highest antiproliferative effect, as well as the highest selectivity for A2780 cells compared to healthy fibroblasts. This antiproliferative effect results from the induction of cell death by mitochondria-mediated apoptosis and autophagy. In vitro DNA interaction studies demonstrated that 1a interacts with DNA by groove-binding, without triggering genotoxicity. In addition, 1a showed a strong affinity to bovine serum albumin that might be important for further inclusion in drug delivery platforms. Proteomic studies reinforced 1a role in promoting A2780 endoplasmatic reticulum (ER) stress by destabilizing the correct protein folding which triggers cell death via apoptosis and autophagy.

2019
Enhancement of water solubility of poorly water-soluble drugs by new biocompatible N-acetyl amino acid N-alkyl cholinium-based ionic liquids, Jesus, {Ana R. }, Soromenho {Mário R. C. }, Raposo {Luís R. }, Esperan{\c c}a {José M. S. S. }, Baptista {Pedro V. }, Fernandes {Alexandra R. }, and Reis {Patrícia M. } , European Journal of Pharmaceutics and Biopharmaceutics, apr, Volume 137, p.227–232, (2019) Abstract

The major challenge of the pharmaceutical industry is to find potential solvents for poorly water-soluble drug molecules. Ionic liquids (ILs) have attracted this industry as (co-) solvents due to their unique physicochemical and biological properties. Herein, a straightforward approach for the enhancement of water solubility of paracetamol and sodium diclofenac is presented, using new biocompatible N-acetyl amino acid N-alkyl cholinium-based ionic liquids as co-solvents (0.2 - 1 mol%). These new ionic liquids were able to increase water solubility of these drugs up to four times higher than in pure water or in an inorganic salt solution. In the presence of these ILs the drugs lipophilicity (log Kow) was not significantly changed for paracetamol, but for sodium diclofenac it was possible to decrease significantly its lipophilicity. Concerning cytotoxicity in human dermal fibroblasts it was observed that ILs did not show a significant toxicity, and were able to improve cell viability compared with the respective precursors.

2018
Evaluation of cell toxicity and DNA and protein binding of green synthesized silver nanoparticles, Ribeiro, {A. P. C. }, Anbu S., Alegria {E. C. B. A. }, Fernandes {A. R. }, Baptista {P. V. }, Mendes R., Matias {A. S. }, Mendes M., {Guedes da Silva} {M. F. C. }, and Pombeiro {A. J. L. } , Biomedicine and Pharmacotherapy, may, Volume 101, p.137–144, (2018) Abstract

Silver nanoparticles (AgNPs) were prepared by GREEN chemistry relying on the reduction of AgNO3 by phytochemicals present in black tea extract. AgNPs were fully characterized by transmission electron microscopy (TEM), ultraviolet-visible spectroscopy ((UV-vis)), X-ray diffraction (XRD) and energy dispersive absorption spectroscopy (EDS). The synthesized AgNPs induced a decrease of the cell viability in a dose-dependent manner with a low IC50 (0.5 ± 0.1 μM) for an ovarian carcinoma cell line (A2780) compared to primary human fibroblasts (IC50 5.0 ± 0.1 μM). The DNA binding capability of CT (calf thymus) DNA was investigated using electronic absorption and fluorescence spectroscopies, circular dichroism and viscosity titration methods. Additionally, the AgNPs strongly quench the intrinsic fluorescence of BSA, as determined by synchronous fluorescence spectra.

2016
Editorial: Cancer Nanotheranostics: What Have We Learned So Far?, Conde, João, Tian Furong, {de la Fuente} {Jesus M. }, and Baptista {Pedro Miguel Ribeiro Viana} , Frontiers in Chemistry, jan, Volume 3, (2016) Abstract
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2014
Evidence of one-way flow bioaccumulation of gold nanoparticles across two trophic levels, Larguinho, Miguel, Correia Daniela, Diniz Mário, and Baptista Pedro , Journal Of Nanoparticle Research, jul, Volume 16, Number 8, (2014) Abstract

This work reports a one-way flow bioaccumulation of gold nanoparticles (AuNPs) in aquatic organisms between two trophic levels. First, Dunaliella salina cells were exposed to citrate-capped AuNPs at different concentrations and during distinct exposure periods to assess internalization and behavior. Afterward, D. salina was incubated with both citrate-capped and functionalized (PEGylated) AuNPs for 24 h and later fed to Mytilus galloprovincialis. Analysis was carried out to assess Au content, histological differences and oxidative stress. These algae were fed to the model organism M. galloprovincialis (Mediterranean mussel) as it is considered of major importance for assessing toxic effects and bioaccumulation of different pollutants in aquatic environments. Elemental Au analysis revealed an uptake of about 76 % of the initial amount of AuNPs (and 36 % for PEGylated AuNPs) in microalgae. Mussel gills and digestive gland showed variable Au content in individuals fed with D. salina previously exposed to AuNPs. No significant morphological alterations were observed in D. salina or mussel digestive glands. Glutathione-s-transferase activity and total antioxidant capacity were assessed as oxidative stress biomarkers showing that AuNPs are not prone to trigger the induction of defenses against oxidative stress.

Experimental optimization of a passive planar rhombic micromixer with obstacles for effective mixing in a short channel length, Fortunato, {Elvira Maria Correia}, Águas {Hugo Manuel Brito}, Busani {Tito Livio}, de Martins {Rodrigo Ferrão Paiva}, and Baptista {Pedro Miguel Ribeiro Viana} , RSC Advances, jan, Volume 4, Number 99, p.56013–56025, (2014) Abstract

This paper presents the performance of a passive planar rhombic micromixer with diamond-shaped obstacles and a rectangular contraction between the rhombi. The device was experimentally optimized using water for high mixing efficiency and a low pressure drop over a wide range of Reynolds numbers (Re = 0.1-117.6) by varying geometrical parameters such as the number of rhombi, the distance between obstacles and the contraction width. Due to the large amount of data generated, statistical methods were used to facilitate and improve the results of the analysis. The results revealed a rank of factors influencing mixing efficiency: Reynolds number > number of rhombi > contraction width > interobstacles distance. The pressure drop measured after three rhombi depends mainly on Re and interobstacle distance. The resulting optimum geometry for the low Re regime has a contraction width of 101 mu m and inter-obstacles distance of 93 mu m, while for the high Re regime a contraction width of 400 v and inter-obstacle distance of 121 mu m are more appropriate. These mixers enabled 80% mixing efficiency creating a pressure drop of 6.0 Pa at Re = 0.1 and 5.1 x 10(4) Pa at Re = 117.6, with a mixer length of 2.5 mu m. To the authors' knowledge, the developed mixer is one of the shortest planar passive micromixers reported to date.

Exosome in Tumour Microenvironment: Overview of the Crosstalk between Normal and Cancer Cells, Roma-Rodrigues, Catarina, de Fernandes {Maria Alexandra Núncio Carvalho Ramos}, and Baptista Pedro , BioMed Research International, (2014) Abstract

Cancer development is amultistep process in which exosomes play important roles. Exosomes are small vesicles formed in vesicular bodies in the endosomal network. The major role of exosomes seems to be the transport of bioactive molecules between cells. Depending on the cell of origin, exosomes are implicated in the regulation of several cellular events, with phenotypic consequences in recipient cells. Cancer derived exosomes (CCEs) are important players in the formation of the tumour microenvironment by (i) enabling the escape of tumour cells to immunological system and help initiating the inflammatory response; (ii) acting in the differentiation of fibroblasts and mesenchymal cells into myofibroblasts; (iii) triggering the angiogenic process; and (iv) enhancing the metastatic evolution of the tumour by promoting epithelial to mesenchymal transformation of tumour cells and by preparing the tumour niche in the new anatomical location. Since the finding that exosomes content resembles that of the cell of origin, they may be regarded as suitable biomarkers for cancer diagnosis, allowing for diagnosis and prognosis via a minimal invasive procedure. Exosome involvement in cancer may open new avenues regarding therapeutics, such as vectors for targeted drug delivery.

2012
Effect of PEG biofunctional spacers and TAT peptide on dsRNA loading on gold nanoparticles, Sanz, Vanesa, Conde João, Hernández Yulán, Baptista {Pedro V. }, Ibarra {Manuel R. }, and {de la Fuente} {Jesús M. } , Journal Of Nanoparticle Research, jun, Volume 14, Number 6, (2012) Abstract

The surface chemistry of gold nanoparticles (AuNPs) plays a critical role in the self-assembly of thiolated molecules and in retaining the biological function of the conjugated biomolecules. According to the well-established gold-thiol interaction the undefined ionic species on citrate-reduced gold nanoparticle surface can be replaced with a self-assembled monolayer of certain thiolate derivatives and other biomolecules. Understanding the effect of such derivatives in the functionalization of several types of biomolecules, such as PEGs, peptides or nucleic acids, has become a significant challenge. Here, an approach to attach specific biomolecules to the AuNPs (∼14 nm) surface is presented together with a study of their effect in the functionalization with other specific derivatives. The effect of biofunctional spacers such as thiolated poly(ethylene glycol) (PEG) chains and a positive peptide, TAT, in dsRNA loading on AuNPs is reported. Based on the obtained data, we hypothesize that loading of oligonucleotides onto the AuNP surface may be controlled by ionic and weak interactions positioning the entry of the oligo through the PEG layer. We demonstrate that there is a synergistic effect of the TAT peptide and PEG chains with specific functional groups on the enhancement of dsRNA loading onto AuNPs.

Enhancement of antibiotic effect via gold: silver-alloy nanoparticles, dos} Santos, {Maria Margarida Moreira, Queiroz {Margarida João}, and Baptista {Pedro Miguel Ribeiro Viana} , Journal Of Nanoparticle Research, Volume 14, Number 5, p.859–867, (2012) Abstract

A strategy for the development of novel antimicrobials is to combine the stability and pleiotropic effects of inorganic compounds with the specificity and efficiency of organic compounds, such as antibiotics. Here we report on the use of gold:silver-alloy (Au:Ag-alloy) nanoparticles, obtained via a single-step citrate co-reduction method, combined to conventional antibiotics to enhance their antimicrobial effect on bacteria. Addition of the alloy nanoparticles considerably decreased the dose of antibiotic necessary to show antimicrobial effect, both for bacterial cells growing in rich medium in suspension and for bacterial cells resting in a physiological buffer on a humid cellulose surface. The observed effect was more pronounced than the sum of the individual effects of the nanoparticles and antibiotic. We demonstrate the enhancement effect of Au:Ag-alloy nanoparticles with a size distribution of 32.5±7.5nm mean diameter on the antimicrobial effect of (i) kanamycin onEscherichia coli(Gram-negative bacterium), and (ii) a β-lactam antibiotic on both a sensitive and resistant strain ofStaphylococcus aureus(Gram-positive bacterium). Together, these results may pave the way for the combined use of nanoparticle–antibiotic conjugates towards decreasing antibiotic resistance currently observed for certain bacteria and conventional antibiotics.

2011
Experimental photophysical characterization of fluorophores in the vicinity of gold nanoparticles, Rosa, {J. P. }, Lima {J. C. }, and Baptista {P. V. } , Nanotechnology, Volume 22, Number 41, (2011) Abstract

We propose an experimental-based tool for dealing with fluorescence modulation close to nanoparticles for application in studies of fluorophores in the vicinity of gold nanoparticles (AuNPs), typically addressed via theoretical models. We performed a photophysical characterization of fluorophores in the vicinity of AuNPs, showing that correct Phi(F) determination suffers from a local pH effect, and address the observed radiative enhancement. Our approach is based on the experimental assurance that the reference fluorophores are in the same optical conditions as those of the AuNP-fluorophore conjugates. We demonstrate the relevance for introducing corrections for the inner filter effect and the reabsorption of the emitted light caused by AuNPs. The proposed approach could circumvent the need for theoretical based corrections and allow for more accurate determination of fluorescence emission in the vicinity of gold nanoparticles.