Publications

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2009
Rodriguez, L, Delgado-Pinar E, Sornosa-Ten A, Alarcon J, Garcia-Espana E, Cano M, Lima JC, Pina F.  2009.  Effect of Water/Carboxymethylcellulose Gel on the Excimer Formation of Polyamine Ligands Functionalized with Naphthalene. Journal of Physical Chemistry B. 113:15455-15459., Number 47 Abstract
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Goncalves, IS, Lopes AD, Amarante TR, Almeida Paz FA, Silva NJO, Pillinger M, Gago S, Palacio F, Kuehn FE, Romao CC.  2009.  Heterometallic complexes involving iron(II) and rhenium(VII) centers connected by mu-oxido bridges. Dalton Transactions. :10199-10207., Number 46 Abstract
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Costa, SMB, Andrade SM, Togashi DM, Paulo PMR, Laia CAT, Viseu IM, da Silva AGM.  2009.  Optical spectroscopy and photochemistry of porphyrins and phthalocyanines. Journal of Porphyrins and Phthalocyanines. 13:509-517., Number 4-5 Abstract
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Rodriguez, L, Ferrer M, Rossell O, Duarte FJS, Santos GA, Lima JC.  2009.  Solvent effects on the absorption and emission of [Re(R(2)bpy)(CO)(3)X] complexes and their sensitivity to CO2 in solution. Journal of Photochemistry and Photobiology a-Chemistry. 204:174-182., Number 2-3 Abstract
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Cano, M, Rodriguez L, Lima JC, Pina F, Dalla Cort A, Pasquini C, Schiaffino L.  2009.  Specific Supramolecular Interactions between Zn2+-Salophen Complexes and Biologically Relevant Anions. Inorganic Chemistry. 48:6229-6235., Number 13 Abstract
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Cano, M, Rodriguez L, Lima JC, Pina F, Dalla Cort A, Pasquini C, Schiaffino L.  2009.  Specific Supramolecular Interactions between Zn2+-Salophen Complexes and Biologically Relevant Anions. Inorganic Chemistry. 48:6229-6235., Number 13 Abstract
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Gago, S, Neves P, Monteiro B, Pessego M, Lopes AD, Valente AA, Paz FAA, Pillinger M, Moreira J, Silva CM, Goncalves IS.  2009.  Synthesis and Catalytic Properties in Olefin Epoxidation of Octahedral Dichloridodioxidomolybdenum(VI) Complexes Bearing N,N-Dialkylamide Ligands: Crystal Structure of Mo2O4(mu(2)-O)Cl-2(dmf)(4). European Journal of Inorganic Chemistry. :4528-4537., Number 29-30 Abstract
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2008
Sousa, MM, Melo MJ, Parola AJ, de Melo JSS, Catarino F, Pina F, Cook FEM, Simmonds MSJ, Lopes JA.  2008.  Flavylium chromophores as species markers for dragon's blood resins from Dracaena and Daemonorops trees, 2008. Journal of Chromatography A. 1209:153-161. Abstract

A simple and rapid liquid chromatographic method with diode-array UV-vis spectrophotometric detection has been developed for the authentication of dragon's blood resins from Dracaena and Daemonorops trees. Using this method it was discovered that the flavylium chromophores, which contribute to the red colour of these resins, differ among the species and could be used as markers to differentiate among species. A study of parameters, such as time of extraction, proportion of MeOH and pH, was undertaken to optimise the extraction of the flavyliums. This method was then used to make extracts from samples of dragon's blood resin obtained from material of known provenance. From the samples analysed 7,6-dihydroxy-5-methoxyflavylium (dracorhodin), 7,4'-dihydroxy-5-methoxyflavylium (dracoflavylium) and 7,4'-dihydroxyflavylium were selected as species markers for Daemonorops spp., Dracaena draco and Dracaena cinnabari, respectively. The chromatograms from these samples were used to build an HPLC-DAD database. The ability to discriminate among species of dragon's blood using the single marker compounds was compared with a principal components analysis of the chromatograms in the HPLC-DAD database. The results from the HPLC-DAD method based on the presence of these flavylium markers was unequivocal. The HPLC-DAD method was subsequently applied to 37 samples of dragon blood resins from the historical samples in the Economic Botany Collection, Royal Botanic Gardens, Kew. The method identified anomalies in how samples in this collection had been labelled. It is clear that the method can be used to evaluate the provenance of samples used in different areas of cultural heritage. It also could be used to monitor the trade of endangered species of dragon's blood and the species being used in complex formulations of traditional Chinese medicine. (C) 2008 Elsevier B.V. All rights reserved.

Vidinha, P, Lourenco NMT, Pinheiro C, Bras AR, Carvalho T, Santos-Silva T, Mukhopadhyay A, Romao MJ, Parola J, Dionisio M, Cabral JMS, Afonso CAM, Barreiros S.  2008.  Ion jelly: a tailor-made conducting material for smart electrochemical devices, 2008. Chemical Communications. :5842-5844. Abstract

We present a new concept for the design of a polymeric conducting material that combines the chemical versatility of an organic salt ( ionic liquid) with the morphological versatility of a biopolymer ( gelatin); the resulting 'ion jelly' can be applied in electrochemical devices, such as batteries, fuel cells, electrochromic windows or photovoltaic cells.

Sousa, MM, Miguel C, Rodrigues I, Parola AJ, Pina F, de Melo JSS, Melo MJ.  2008.  A photochemical study on the blue dye indigo: from solution to ancient Andean textiles, 2008. Photochemical & Photobiological Sciences. 7:1353-1359. Abstract

The degradation of indigo and its water soluble derivative indigo carmine was investigated under light excitation in the presence and absence of molecular oxygen in solution (homogeneous) and gels (heterogeneous) media. Collagen and carboxymethylcellulose (CMC) aqueous gels were chosen to simulate a natural textile environment, wool and cotton, respectively. Isatin was found to be the major degradation product of indigo. In solution, the photodegradation quantum yields (Phi(R)) were in the order of 10(-4), with the exception of aqueous media (Phi(R) = 9 x 10(-6)), and dependent on the irradiation wavelength. In the case of indigo carmine the Phi(R) values were found to suffer a 2-fold increase upon going from water to gels. The results indicate the absence of degradation products involving singlet oxygen and suggest peroxides, or other oxygen based radicals, to have a key role in the degradation of indigo. Finally, the relevance of the simulation is discussed by comparing the main degradation products to those found in the blues of millenary Andean textiles.

Sousa, MM, Melo MJ, Parola AJ, Morris PJT, Rzepa HS, de Melo JSS.  2008.  A Study in Mauve: Unveiling Perkin's Dye in Historic Samples, 2008. Chemistry-a European Journal. 14:8507-8513. Abstract

The analysis of different historic mauve samples-mauve salts and dyed textiles-was undertaken to establish the exact nature of the iconic dye produced by W.H. Perkin in the nineteenth century. Fourteen samples from important museum collections were analyzed, and it was determined that. in contrast to the general wisdom that mauveine consists of C, and C, structures. Perkin's mauveine is a complex mixture of at least thirteen methyl derivatives (C, to C(28)) with a 7-amino5-phenyl-3-(phenylamino)phenazin-5- ium core. A fingerprint was established in which mauveines A or B were dominant, and in which mauveines B2 and C(25) were found to be important tracers to probe the original synthesis. Counterion analysis showed that all the mauve salts should be dated after 1862. Perkin's original recipe could be identified in three textile samples, and in these cases, mauveines A and C25 were found to he the major chromophores. These are now shown to be the samples containing the "original mauve".

Rodriguez, L, Lima JC, Parola JA, Pina F, Meitz R, Aucejo R, Garcia-Espana E, Llinares JM, Soriano C, Alarcon J.  2008.  Anion detection by fluorescent Zn(II) complexes of functionalized polyamine ligands. Inorganic Chemistry. 47:6173-6183., Number 14 Abstract
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Sousa, MM, Melo MJ, Parola JA, Seixas de Melo SJ, Catarino F, Pina F, Cook FEM, Simmonds MSJ, Lopes JA.  2008.  Flavylium chromophores as species markers for dragon's blood resins from Dracaena and Daemonorops trees. Journal of Chromatography A. 1209:153-161., Number 1-2 Abstract
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Branco, LC, Ferreira FC, Santos JL, Crespo JG, Afonso CAM.  2008.  Sharpless asymmetric dihydroxylation of olefins in water-surfactant media with recycling of the catalytic system by membrane nanofiltration. Advanced Synthesis & Catalysis. 350:2086-2098., Number 13 Abstract
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Ferrer, M, Gutierrez A, Rodriguez L, Rossell O, Lima JC, Font-Bardia M, Solans X.  2008.  Study of the effect of the phosphane bridging chain nature on the structural and photophysical properties of a series of gold(I) ethynylpyridine complexes. European Journal of Inorganic Chemistry. :2899-2909., Number 18 Abstract
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Claro, A, Melo MJ, Schafer S, de Melo SSJ, Pina F, van den Berg KJ, Burnstock A.  2008.  The use of microspectrofluorimetry for the characterization of lake pigments. Talanta. 74:922-929., Number 4 Abstract
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2007
Melo, MJ, Sousa M, Parola AJ, de Melo JSS, Catarino F, Marcalo J, Pina F.  2007.  Identification of 7,4 '-dihydroxy-5-methoxyflavylium in "Dragon's blood": To be or not to be an anthocyanin, 2007. Chemistry-a European Journal. 13:1417-1422. Abstract

The compound 7,4'-dihydroxy-5-methoxyflavylium (dracoflavylium) was identified as the major red colorant in samples of the resin "dragon's blood", extracted from the tree Dracaena draco. The complex network of reversible chemical reactions that dracoflavylium undergoes in aqueous solution is fully described; for the first time, all the equilibrium constants that enable a complete characterisation of the system have been obtained (K'(a)=1.6 x 10(-4), K-a1 = 1.0 x 10(-4), K-a2 = 3.2 x 10(-8), K-Ct1 = 1.0 x 10(-7), K-Ct2 = 1.3 x 10(-10)). It is concluded that the red colour is due to a stable quinoid base, A, which is the major species at pH 4-7. It is further shown that this compound does not fit the commonly accepted definitions of anthocyanidin nor 3-deoxyanthocyanidin. Similarly to synthetic flavylium salts, the natural compound 7,4'-dihydroxy-5-methoxyflavylium gives rise to several species (multistate system) reversibly interconverted by external stimuli, such as pH.

de Melo, JS, Takato S, Sousa M, Melo MJ, Parola AJ.  2007.  Revisiting Perkin's dye(s): the spectroscopy and photophysics of two new mauveine compounds (B2 and C), 2007. Chemical Communications. :2624-2626. Abstract

Two new components have been identified in an early sample prepared according to the original recipe of Perkin, and perhaps even by Perkin himself around 1860 - a new isomer of Perkin's mauveine B (designated as mauveine B2) together with a new mauveine compound (mauveine C) - and these compounds were synthesized again using starting materials chosen to reproduce Perkin's original synthesis and isolated by HPLC-DAD, identified by H-1 NMR, MS and their spectroscopic (UV/Vis and emission) and photophysical behaviour investigated.

Parola, AJ, Lima JC, Pina F, Pina J, de Melo JS, Soriano C, Garcia-Espana E, Aucejo R, Alarcon J.  2007.  Synthesis and photophysical properties of dansyl-based polyamine ligands and their Zn(II) complexes, 2007. Inorganica Chimica Acta. 360:1200-1208. Abstract

The synthesis, potentiometric studies and photophysical properties of two new polyamine ligands (L1 and L2) possessing the dansyl chromophore were studied in aqueous 0.15 M NaCl. The compounds show the absorption and emissions bands characteristic of the dansylamide fluorophore and both present intramolecular excited state proton transfer at intermediate pH ranges. One of the ligands (L2) strongly coordinates Zn(II) leading to fluorescence quenching. A model compound (L3) of the dansyl moiety was also investigated. (c) 2006 Elsevier B.V. All rights reserved.

Sousa, M, Melo MJ, Casimiro T, Aguiar-Ricardo A.  2007.  The art of CO2 for art conservation: a green approach to antique textile cleaning. Green Chemistry. 9:943-947., Number 9 Abstract
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Melo, MJ, Sousa M, Parola JA, Seixas de Melo SJ, Catarino F, Marcalo J, Pina F.  2007.  Identification of 7,4 '-dihydroxy-5-methoxyflavylium in "Dragon's blood": To be or not to be an anthocyanin. Chemistry-a European Journal. 13:1417-1422., Number 5 Abstract
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Noronha, M, Lima JC, Paci E, Santos H, Macanita AL.  2007.  Tracking local conformational changes of ribonuclease A using picosecond time-resolved fluorescence of the six tyrosine residues. Biophysical Journal. 92:4401-4414., Number 12 Abstract
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2006
Clares, MP, Lodeiro C, Fernandez D, Parola AJ, Pina F, Garcia-Espana E, Soriano C, Tejero R.  2006.  Specific interaction of citrate with bis(fluorophoric) bibrachial lariat aza-crown in comparison with the other components of the Krebs cycle, 2006. Chemical Communications. :3824-3826. Abstract

Among the Krebs cycle components, just citrate enhances the fluorescence of a new bi(brachial) lariat aza-crown containing appended naphthalene fluorophores.

Bazzicalupi, C, Bencini A, Bianchi A, Borsari L, Danesi A, Giorgi C, Lodeiro C, Mariani P, Pina F, Santarelli S, Tamayo A, Valtancoli B.  2006.  Basicity and coordination properties of a new phenanthroline-based bis- macrocyclic receptor. Dalton Transactions. :4000-4010., Number 33 Abstract
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Braga, SS, Gago S, Seixas JD, Valente AA, Pillinger M, Santos TM, Goncalves IS, Romao CC.  2006.  beta-cyclodextrin and permethylated beta-cyclodextrin inclusion compounds of a cyclopentadienyl molybdenum tricarbonyl complex and their use as cyclooctene epoxidation catalyst precursors. Inorganica Chimica Acta. 359:4757-4764., Number 15 Abstract
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