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2017
Krings, B-J, Decker M, Weinberger N, Hirsch J.  2017.  Imagined technology futures in demand-oriented technology assessment. Journal of Responsible Innovation. 4(2):177-196.
Simões, S, Zeyringer M, Mayr D, Schmidt J.  2017.  Impact of modelling geographical disaggregation of wind and PV electricity generation in large energy system models: a case study for Austria. Renewable Energy Journal. 105:183-198.
Faghihi, P, Almeida T, Quintas F.  2017.  The Impact of the Evolution of Modern Technology on Public Glass Art. Arte Pública na Era da Criatividade Digital. Atas do Colóquio Internacional 2017. Public Art in the Digital Creativity Era. International Conference Proceedings 2017. :482-489., Porto, Portugal: Universidade Católica Edutora / CITAR
Loureiro, J, Mateus T, Filonovich S, Ferreira M, Figueira J, Rodrigues A, Donovan BF, Hopkins PE, Ferreira I.  2017.  Improved thermoelectric properties of nanocrystalline hydrogenated silicon thin films by post-deposition thermal annealing. Thin Solid Films. 642:276-280. AbstractWebsite

The influence of post-deposition thermal annealing on the thermoelectric properties of n-and p-type nanocrystalline hydrogenated silicon thin films, deposited by plasma enhanced chemical vapour deposition, was studied in this work. The Power Factor of p-type films was improved from 7× 10− 5 to 4× 10− 4 W/(mK 2) as the annealing temperature, under vacuum, increased up to 400° C while for n-type films it has a minor influence. Optimized Seebeck coefficient values of 460 μV/K and− 320 μV/K were achieved for p-and n-type films, respectively, with crystalline size in the range of 10 nm, leading to remarkable low thermal conductivity values (< 10 Wm− 1. K− 1) at room temperature.

Pauleta, SR, Carreira C, Moura I.  2017.  Insights into nitrous oxide reductase. Metalloenzymes in Denitrification: Applications and Environmental Impacts, RSC Metallobiology Series No. 9 (ISBN: 978-1-78262-376-2).. (Moura, I., Moura, J. J. G., Pauleta, S. R., Maia, L. B., Eds.).:141-169.: Royal Society of Chemistry
Ramos, S, Almeida RM, Cordas CM, Moura JJG, Pauleta SR, Moura I.  2017.  Insights into the recognition and electron transfer steps in nitric oxide reductase from Marinobacter hydrocarbonoclasticus. J Inorg Biochem. 177:402-411.
Gargiulo, M, Chiodi A, De Miglio R, Simoes S, Long G, Pollard M, Gouveia JP, Giannakidis G.  2017.  An Integrated Planning Framework for the Development of Sustainable and Resilient Cities - The Case of the InSMART Project. Procedia Engineering. 198:444-453.
Carvalho, HF, Barbosa A, Roque ACA, Iranzo O, Branco RJF.  2017.  Integration of Molecular Dynamics Based Predictions into the Optimization of de novo Protein Designs: Limitations and Benefits. Computation Protein Design. :181-201.
Costa, E, Seixas J, Costa G, Turrentine T.  2017.  Interplay between ethanol and electric vehicles as low carbon mobility options for passengers in the municipality of São Paulo. JOURNAL OF SUSTAINABLE TRANSPORTATION. 7(11):518-525.
Bonnet, A, Grosso AR, Elkaoutari A, Coleno E, Presle A, Sridhara SC, Janbon G, Geli V, de Almeida SF, Palancade B.  2017.  Introns Protect Eukaryotic Genomes from Transcription-Associated Genetic Instability. Molecular Cell. :1–14. AbstractWebsite

Transcription is a source of genetic instability that can notably result from the formation of genotoxic DNA:RNA hybrids, or R-loops, between the nascent mRNA and its template. Here we report an unexpected function for introns in counteracting R-loop accumulation in eukaryotic genomes. Deletion of endogenous introns increases R-loop formation, while insertion of an intron into an intronless gene suppresses R-loop accumulation and its deleterious impact on transcription and recombination in yeast. Recruitment of the spliceosome onto the mRNA, but not splicing per se, is shown to be critical to attenuate R-loop formation and transcription-associated genetic instability. Genome-wide analyses in a number of distant species differing in their intron content, including human, further revealed that intron-containing genes and the intron-richest genomes are best protected against R-loop accumulation and subsequent genetic instability. Our results thereby provide a possible rationale for the conservation of introns throughout the eukaryotic lineage.

Maia, LB, Moura JJG.  2017.  Lessons from denitrification to the human metabolism of signalling nitric oxide. Metalloenzymes in Denitrification: Applications and Environmental Impacts, RSC Metallobiology Series No. 9 (ISBN: 978-1-78262-376-2).. (Moura, I., Moura, J. J. G., Pauleta, S. R., Maia, L. B., Eds.).:419-443.: Royal Society of Chemistry
Dias, L, Simões S, Gouveia JP, Seixas J.  2017.  Local Sustainable energy systems - the role of Times model. ETSAP Workshop on Sustainability Performance of the Energy Systems. , Madrid, Spain, 29th and 30th of May: CIEMAT
Marouf, S, et al.  2017.  Low-temperature spray-coating of high-performing ZnO:Al lms for transparent electronics. J. Anal. Appl. Pyrolysis. 127:299-308.
Fernandes, CSM, Pina AS, Batalha ÍL, Roque ACA.  2017.  Magnetic fishing of recombinant green fluorescent proteins and tagged proteins with designed synthetic ligands. Separation Science and Technology. AbstractWebsite

Biomimetic ligands have emerged to overcome disadvantages inherent in biological ligands. In particular, the Ugi reaction can generate scaffolds where molecular diversity can be introduced, allowing the synthesis and screening of ligand libraries in a high-throughput manner against a variety of biological targets. Two adsorbents bearing Ugi-based synthetic ligands, coined A4C7 and A7C1, were previously developed for the selective recovery of green fluorescent protein (GFP) and RKRKRK-tagged GFP directly from Escherichia coli crude extracts. This work describes, for the first time, the in situ synthesis of Ugi-based ligands on magnetic beads and their application in the magnetic recovery of cognate proteins.

Gouveia, JP, Palma P, Seixas J, Simoes S.  2017.  Mapping Residential Thermal Comfort Gap at very high resolution spatial scale: Implications for Energy Policy Design. 40th International Association of Energy Economics International Conference, Meeting the Energy Demand of Emerging Economies. Implications for Energy and Environmental Markets. , Singapore, 18-21 June
  2017.  midas workshop.
Chávez-Rodriguéz, M, Dias L, Simoes S, Seixas J, Hawkes A, Szklo A, Lucena A.  2017.  Modelling the role of natural gas in the Southern Cone of Latin America. Applied Energy. 201(1):219-239.
Maia, LB, Moura I, Moura JJG.  2017.  Molybdenum and tungsten-containing enzymes: an overview. Molybdenum and Tungsten Enzymes: Biochemistry, RSC Metallobiology Series No. 5 (ISBN: 978-1-78262-089-1). . (Hille, R., Schulzke, C., Kirk, M.L., Eds.).:1-80.: Royal Society of Chemistrymo_w_enzymes-rsc_book_biochemistry-chap_1.pdf
Ferreira, J, Santos T, Pereira P, Corvo MC, Queiroz JA, Sousa F, Cruz C.  2017.  Naphthalene amine support for G-quadruplex isolation. Analyst. 142(16):2982-2994.: Royal Society of Chemistry AbstractWebsite

G-quadruplex (G4) is involved in many biological processes, such as telomere function, gene expression and DNA replication. The selective isolation of G4 using affinity ligands that bind tightly and selectively is a valuable strategy for discovering new G4 binders for the separation of G4 from duplexes or the discrimination of G4 structures. In this work, one affinity chromatographic support was prepared using a naphthalene amine as a G4 binder. The ligand was immobilized on epoxy-activated Sepharose CL-6B using a long spacer arm and was characterized by HR-MAS spectroscopy. The supercoiled (sc) isoform of pVAX1-LacZ and pVAX1-G4 was isolated from a native sample. Also, the recovery and isolation of the plasmid isoforms from Escherichia coli lysate samples were achieved using an ionic gradient with different concentrations of NaCl in 10 mM Tris-HCl (pH 7.4). The retention times of different DNA/single strand sequences that can form G4, such as, c-MYC, c-kit1, c-kit2, tetrameric, telomeric (23AG), thrombin aptamer (TBA) and 58Sγ3 in this support were evaluated. Our experimental results suggest that the support exhibits selectivity for parallel c-MYC and c-kit1 G4s. In vitro transcription was performed using purified sc pVAX1-G4 and pPH600 to induce G4 formation and circular dichroism (CD) analysis confirmed that both transcripts adopt a parallel G4 topology.

Duarte, AR.  2017.  Natural deep eutectic systems inspired in animals living in extreme environments: citotoxicity profile. 2nd Chem2Nature Workshop. , Porto, Portugal