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2008
Branco, LC, Crespo JG, Afonso CAM.  2008.  Ionic liquids as an efficient bulk membrane for the selective transport of organic compounds. Journal of Physical Organic Chemistry. 21:718-723., Number 7-8 AbstractWebsite
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Pinheiro, AV, Baptista P, Lima JC.  2008.  Light activation of transcription: photocaging of nucleotides for control over RNA polymerization. Nucleic Acids Research. 36, Number 14 Abstract
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Viegas, A, Bras NF, Cerqueira NMFSA, Fernandes PA, Prates JAM, Fontes CMGA, Bruix M, Romao MJ, Carvalho AL, Ramos MJ, Macedo AL, Cabrita EJ.  2008.  Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach. Febs Journal. 275:2524-2535., Number 10 AbstractWebsite
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Giestas, L, Ferreira GNM, Baptista PV, Lima JC.  2008.  Multiplexed spectral coding for simultaneous detection of DNA hybridization reactions based on FRET. Sensors and Actuators B-Chemical. 134:146-157., Number 1 Abstract
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Rodriguez, L, Lodeiro C, Lima JC, Crehuet R.  2008.  Neutral gold(I) metallosupramolecular compounds: Synthesis and characterization, photophysical properties, and density functional theory studies. Inorganic Chemistry. 47:4952-4962., Number 11 Abstract
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Gavel, OY, Bursakov SA, Di Rocco G, Trincao J, Pickering IJ, George GN, Calvete JJ, Shnyrov VL, Brondino CD, Pereira AS, Lampreia J, Tavares P, Moura JJG, Moura I.  2008.  A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774. Journal Of Inorganic Biochemistry. {102}:{1380-1395}., Number {5-6} Abstract

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the ``LID'' domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.

Rato, RT, Ortigueira MD, Batista AG.  2008.  On the HHT, its problems, and some solutions. Mechanical Systems and Signal Processing. :1374–1394. Abstract
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Ortigueira, MD, Batista AG.  2008.  On the relation between the fractional Brownian motion and the fractional derivatives. Physics Letters. A:958–968. Abstract
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Najmudin, S, Gonzalez PJ, Trincao J, Coelho C, Mukhopadhyay A, Cerqueira NMFSA, Romao CC, Moura I, Moura JJG, Brondino CD, Romao MJ.  2008.  Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum. Journal of Biological Inorganic Chemistry. 13:737-753., Number 5 AbstractWebsite
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Gago, S, Costa T, de Melo SJ, Goncalves IS, Pillinger M.  2008.  Preparation and photophysical characterisation of Zn-Allayered double hydroxides intercalated by anionic pyrene derivatives. Journal of Materials Chemistry. 18:894-904., Number 8 AbstractWebsite
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Vidinha, P, Augusto V, Nunes J, Lima JC, Cabral JMS, Barreiros S.  2008.  Probing the microenvironment of sol-gel entrapped cutinase: The role of added zeolite NaY. Journal of Biotechnology. 135:181-189., Number 2 Abstract
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Najmudin, S, Pinheiro BA, Romao MJ, Prates JAM, Fontes CMGA.  2008.  Purification, crystallization and crystallographic analysis of Clostridium thermocellum endo-1,4-beta-D-xylanase 10B in complex with xylohexaose. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 64:715-718. AbstractWebsite
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Gavel, OY, Kladova AV, Bursakov SA, Dias JM, Texeira S, Shnyrov VL, Moura JJG, Moura I, Romao MJ, Trincao J.  2008.  Purification, crystallization and preliminary X-ray diffraction analysis of adenosine triphosphate sulfurylase (ATPS) from the sulfate-reducing bacterium Desulfovibrio desulfuricans ATCC 27774. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 64:593-595. AbstractWebsite
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Coito, F, Palma LB.  2008.  A remote laboratory environment for blended learning. Proceedings of the 1st international conference on PErvasive Technologies Related to Assistive Environments. :69.: ACM Abstract

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Branco, LC, Ferreira FC, Santos JL, Crespo JG, Afonso CAM.  2008.  Sharpless asymmetric dihydroxylation of olefins in water-surfactant media with recycling of the catalytic system by membrane nanofiltration. Advanced Synthesis & Catalysis. 350:2086-2098., Number 13 AbstractWebsite
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Ferrer, M, Gutierrez A, Rodriguez L, Rossell O, Lima JC, Font-Bardia M, Solans X.  2008.  Study of the effect of the phosphane bridging chain nature on the structural and photophysical properties of a series of gold(I) ethynylpyridine complexes. European Journal of Inorganic Chemistry. :2899-2909., Number 18 Abstract
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Barbazan, P, Carballo R, Covelo B, Lodeiro C, Lima JC, Vazquez-Lopez EM.  2008.  Synthesis, characterization, and photophysical properties of 2-hydroxybenzaldehyde [(1E)-1-pyridin-2-ylethylidene]hydrazone and its rhenium(I) complexes. European Journal of Inorganic Chemistry. :2713-2720., Number 17 Abstract
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Nunez, C, Oliveira E, Giestas L, Valencia L, Macias A, Lima JC, Bastida R, Lodeiro C.  2008.  Synthesis, spectroscopic, structural and complexation studies of a new tetra-naphthylmethylene pendant-armed macrocyclic ligand. Inorganica Chimica Acta. 361:2183-2194., Number 8 Abstract
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Claro, A, Melo MJ, Schafer S, de Melo SSJ, Pina F, van den Berg KJ, Burnstock A.  2008.  The use of microspectrofluorimetry for the characterization of lake pigments. Talanta. 74:922-929., Number 4 AbstractWebsite
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Coito, F, Gomes L, Costa A, Palma L.  2008.  The Use of Remote Laboratory Activities within the Learning Process. Abstract

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Fortunato, E, Correia N, Barquinha P, Pereira LÍ, Goncalves G\c{C}alo, Martins R.  2008.  {High-Performance Flexible Hybrid Field-Effect Transistors Based on Cellulose Fiber Paper}. IEEE Electron Device Letters. 29:988–990., Number 9 AbstractWebsite

In this letter, we report for the first time the use of a sheet of cellulose-fiber-based paper as the dielectric layer used in oxide-based semiconductor thin-film field-effect transis- tors (FETs). In this new approach, we are using the cellulose– fiber-based paper in an “interstrate” structure since the device is built on both sides of the cellulose sheet. Such hybrid FETs present excellent operating characteristics such as high channel saturation mobility (> 30 cm2/Vs), drain–source current on/off modulation ratio of approximately 104, near-zero threshold voltage, enhance- ment n-type operation, and subthreshold gate voltage swing of 0.8 V/decade. The cellulose-fiber-based paper FETs’ character- istics have been measured in air ambient conditions and present good stability, after two months of being processed. The obtained results outpace those of amorphous Si thin-film transistors (TFTs) and rival with the same oxide-based TFTs produced on either glass or crystalline silicon substrates. The compatibility of these devices with large-scale/large-area deposition techniques and low– cost substrates as well as their very low operating bias delin- eates this as a promising approach to attain high-performance disposable electronics like paper displays, smart labels, smart packaging, RFID, and point-of-care systems for self-analysis in bioapplications, among others.

Martins, R, Barquinha P, Pereira L, Correia N, Gonçalves G, Ferreira I, Fortunato E.  2008.  {Write-erase and read paper memory transistor}. Applied Physics Letters. 93:203501., Number 20 AbstractWebsite
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2007
Ortigueira, MD.  2007.  Riesz potentials as centred derivatives, September. 2nd Symposium on Fractional Derivatives and Their Applications. (J Sabatier, OP Agrawal, Machado, J.A.T., Eds.).:93–112.: Springer Abstract

Generalised fractional centred differences and derivatives are studied in this chapter. These generalise to real orders the existing ones valid for even and odd positive integer orders. For each one, suitable integral formulations are presented. The limit computation inside the integrals leads to generalisations of the Cauchy derivative. Their computations using a special path lead to the well known Riesz potentials. A study for coherence is done by applying the definitions to functions with Fourier transform. The existence of inverse Riesz potentials is also studied.

Ortigueira, MD.  2007.  Riesz potentials as centred derivatives, September. 2nd Symposium on Fractional Derivatives and Their Applications. (J Sabatier, OP Agrawal, Machado, J.A.T., Eds.).:93–112.: Springer. Abstract

Generalised fractional centred differences and derivatives are studied in this chapter. These generalise to real orders the existing ones valid for even and odd positive integer orders. For each one, suitable integral formulations are presented. The limit computation inside the integrals leads to generalisations of the Cauchy derivative. Their computations using a special path lead to the well known Riesz potentials. A study for coherence is done by applying the definitions to functions with Fourier transform. The existence of inverse Riesz potentials is also studied.