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2008
Giestas, L, Ferreira GNM, Baptista PV, Lima JC.  2008.  Multiplexed spectral coding for simultaneous detection of DNA hybridization reactions based on FRET. Sensors and Actuators B-Chemical. 134:146-157., Number 1 Abstract
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Rodriguez, L, Lodeiro C, Lima JC, Crehuet R.  2008.  Neutral gold(I) metallosupramolecular compounds: Synthesis and characterization, photophysical properties, and density functional theory studies. Inorganic Chemistry. 47:4952-4962., Number 11 Abstract
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Gavel, OY, Bursakov SA, Di Rocco G, Trincao J, Pickering IJ, George GN, Calvete JJ, Shnyrov VL, Brondino CD, Pereira AS, Lampreia J, Tavares P, Moura JJG, Moura I.  2008.  A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774. Journal Of Inorganic Biochemistry. {102}:{1380-1395}., Number {5-6} Abstract

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the ``LID'' domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.

Rato, RT, Ortigueira MD, Batista AG.  2008.  On the HHT, its problems, and some solutions. Mechanical Systems and Signal Processing. :1374–1394. Abstract
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Ortigueira, MD, Batista AG.  2008.  On the relation between the fractional Brownian motion and the fractional derivatives. Physics Letters. A:958–968. Abstract
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Najmudin, S, Gonzalez PJ, Trincao J, Coelho C, Mukhopadhyay A, Cerqueira NMFSA, Romao CC, Moura I, Moura JJG, Brondino CD, Romao MJ.  2008.  Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum. Journal of Biological Inorganic Chemistry. 13:737-753., Number 5 AbstractWebsite
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Gago, S, Costa T, de Melo SJ, Goncalves IS, Pillinger M.  2008.  Preparation and photophysical characterisation of Zn-Allayered double hydroxides intercalated by anionic pyrene derivatives. Journal of Materials Chemistry. 18:894-904., Number 8 AbstractWebsite
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Vidinha, P, Augusto V, Nunes J, Lima JC, Cabral JMS, Barreiros S.  2008.  Probing the microenvironment of sol-gel entrapped cutinase: The role of added zeolite NaY. Journal of Biotechnology. 135:181-189., Number 2 Abstract
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Najmudin, S, Pinheiro BA, Romao MJ, Prates JAM, Fontes CMGA.  2008.  Purification, crystallization and crystallographic analysis of Clostridium thermocellum endo-1,4-beta-D-xylanase 10B in complex with xylohexaose. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 64:715-718. AbstractWebsite
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Gavel, OY, Kladova AV, Bursakov SA, Dias JM, Texeira S, Shnyrov VL, Moura JJG, Moura I, Romao MJ, Trincao J.  2008.  Purification, crystallization and preliminary X-ray diffraction analysis of adenosine triphosphate sulfurylase (ATPS) from the sulfate-reducing bacterium Desulfovibrio desulfuricans ATCC 27774. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 64:593-595. AbstractWebsite
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Coito, F, Palma LB.  2008.  A remote laboratory environment for blended learning. Proceedings of the 1st international conference on PErvasive Technologies Related to Assistive Environments. :69.: ACM Abstract

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Branco, LC, Ferreira FC, Santos JL, Crespo JG, Afonso CAM.  2008.  Sharpless asymmetric dihydroxylation of olefins in water-surfactant media with recycling of the catalytic system by membrane nanofiltration. Advanced Synthesis & Catalysis. 350:2086-2098., Number 13 AbstractWebsite
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Ferrer, M, Gutierrez A, Rodriguez L, Rossell O, Lima JC, Font-Bardia M, Solans X.  2008.  Study of the effect of the phosphane bridging chain nature on the structural and photophysical properties of a series of gold(I) ethynylpyridine complexes. European Journal of Inorganic Chemistry. :2899-2909., Number 18 Abstract
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Barbazan, P, Carballo R, Covelo B, Lodeiro C, Lima JC, Vazquez-Lopez EM.  2008.  Synthesis, characterization, and photophysical properties of 2-hydroxybenzaldehyde [(1E)-1-pyridin-2-ylethylidene]hydrazone and its rhenium(I) complexes. European Journal of Inorganic Chemistry. :2713-2720., Number 17 Abstract
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Nunez, C, Oliveira E, Giestas L, Valencia L, Macias A, Lima JC, Bastida R, Lodeiro C.  2008.  Synthesis, spectroscopic, structural and complexation studies of a new tetra-naphthylmethylene pendant-armed macrocyclic ligand. Inorganica Chimica Acta. 361:2183-2194., Number 8 Abstract
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Claro, A, Melo MJ, Schafer S, de Melo SSJ, Pina F, van den Berg KJ, Burnstock A.  2008.  The use of microspectrofluorimetry for the characterization of lake pigments. Talanta. 74:922-929., Number 4 AbstractWebsite
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Coito, F, Gomes L, Costa A, Palma L.  2008.  The Use of Remote Laboratory Activities within the Learning Process. Abstract

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Fortunato, E, Correia N, Barquinha P, Pereira LÍ, Goncalves G\c{C}alo, Martins R.  2008.  {High-Performance Flexible Hybrid Field-Effect Transistors Based on Cellulose Fiber Paper}. IEEE Electron Device Letters. 29:988–990., Number 9 AbstractWebsite

In this letter, we report for the first time the use of a sheet of cellulose-fiber-based paper as the dielectric layer used in oxide-based semiconductor thin-film field-effect transis- tors (FETs). In this new approach, we are using the cellulose– fiber-based paper in an “interstrate” structure since the device is built on both sides of the cellulose sheet. Such hybrid FETs present excellent operating characteristics such as high channel saturation mobility (> 30 cm2/Vs), drain–source current on/off modulation ratio of approximately 104, near-zero threshold voltage, enhance- ment n-type operation, and subthreshold gate voltage swing of 0.8 V/decade. The cellulose-fiber-based paper FETs’ character- istics have been measured in air ambient conditions and present good stability, after two months of being processed. The obtained results outpace those of amorphous Si thin-film transistors (TFTs) and rival with the same oxide-based TFTs produced on either glass or crystalline silicon substrates. The compatibility of these devices with large-scale/large-area deposition techniques and low– cost substrates as well as their very low operating bias delin- eates this as a promising approach to attain high-performance disposable electronics like paper displays, smart labels, smart packaging, RFID, and point-of-care systems for self-analysis in bioapplications, among others.

Martins, R, Barquinha P, Pereira L, Correia N, Gonçalves G, Ferreira I, Fortunato E.  2008.  {Write-erase and read paper memory transistor}. Applied Physics Letters. 93:203501., Number 20 AbstractWebsite
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2007
Ortigueira, MD.  2007.  Riesz potentials as centred derivatives, September. 2nd Symposium on Fractional Derivatives and Their Applications. (J Sabatier, OP Agrawal, Machado, J.A.T., Eds.).:93–112.: Springer Abstract

Generalised fractional centred differences and derivatives are studied in this chapter. These generalise to real orders the existing ones valid for even and odd positive integer orders. For each one, suitable integral formulations are presented. The limit computation inside the integrals leads to generalisations of the Cauchy derivative. Their computations using a special path lead to the well known Riesz potentials. A study for coherence is done by applying the definitions to functions with Fourier transform. The existence of inverse Riesz potentials is also studied.

Ortigueira, MD.  2007.  Riesz potentials as centred derivatives, September. 2nd Symposium on Fractional Derivatives and Their Applications. (J Sabatier, OP Agrawal, Machado, J.A.T., Eds.).:93–112.: Springer. Abstract

Generalised fractional centred differences and derivatives are studied in this chapter. These generalise to real orders the existing ones valid for even and odd positive integer orders. For each one, suitable integral formulations are presented. The limit computation inside the integrals leads to generalisations of the Cauchy derivative. Their computations using a special path lead to the well known Riesz potentials. A study for coherence is done by applying the definitions to functions with Fourier transform. The existence of inverse Riesz potentials is also studied.

Rial-Otero, R, Carreira RJ, Cordeiro FM, Moro AJ, Santos HM, Vale G, Moura I, Capelo JL.  2007.  Ultrasonic assisted protein enzymatic digestion for fast protein identification by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Sonoreactor versus ultrasonic probe, Sep 28. Journal of Chromatography A. 1166:101-107., Number 1-2 AbstractWebsite

Two different ultrasonic energy sources, the sonoreactor and the ultrasonic probe, are compared for enzymatic digestion of proteins for protein identification by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDl-TOF-MS) using the peptide mass fingerprint (PMF) procedure. Variables such as (i) trypsin/protein ratio; (ii) sonication time; (iii) ultrasound amplitude; and (iv) protein concentration are studied and compared. As a general rule, the trypsin/protein ratio and the minimum protein concentration successfully digested are similar with both ultrasonic energy sources. Results showed that the time needed to digest proteins was shorter with the ultrasonic probe, 60 s versus 120 s, for the same amplitude of sonication, 50%. However, lower standard deviations and cleaner MALDI-TOF-MS spectra were obtained with the sonoreactor. In addition, the sonoreactor device provided higher sample throughput (6 samples for the sonoreactor versus 1 sample for the ultrasonic probe) and easier sample handling for lower sample volumes (25 mu l). Finally, a comparison of both methodologies for the specific identification of the adenylylsulphate reductase alfa subunit from a complex protein mixture from Desulfovibrio desulfuricans ATCC 27774 was done as a proof of the procedure. (c) 2007 Elsevier B.V. All rights reserved.

Sampaio, J, Moniz A.  2007.  Assessing Human And Technological Dimensions In Virtual Team’S Operational Competences, Sep. , Number 6942: University Library of Munich, Germany Abstract

Cognitive task automation may lead to over trust, complacency and loss of the necessary work environment situation awareness. This is a major constraint in complex work organizations teamwork, ending up into an operational gap, between system developments and its understanding and usability, by operators. This document presents a summary of the main results of author’s research on operational decision processes and occupational competences, applied to the air traffic control operational reality. Introducing a human/technological complementary approach to virtual team’s conceptualisation, the results show there is a dimension to be followed in human/machine integration, which stands beyond interface design, and calls for a deeper human comprehension of technological agent’s structure and functionalities, which will, ultimately, require the development of an operational cognitive framework, where work processes and technological behaviour are integrated in professional competences, as he two faces of the same coin.

Chen, H, Mousty C, Cosnier S, Silveira C, Moura JJG, Almeida MG.  2007.  Highly sensitive nitrite biosensor based on the electrical wiring of nitrite reductase by ZnCr-AQS LDH, Sep. Electrochemistry Communications. 9:2240-2245., Number 9 AbstractWebsite

A biosensor for amperometric determination of nitrite was developed using cytochrome c nitrite reductase (ccNiR) from Desulfovibrio desulfuricans immobilized and electrically connected on a glassy carbon electrode by entrapment into redox active [ZnCr-AQS] layered double hydroxide containing anthraquinone-2-sulfonate (AQS). The transduction step corresponded to the electro-enzymatic reduction of nitrite by immobilized AQS molecules at -0.6 V. The biosensor showed a fast response to nitrite (5 s) with a linear range between 0.015 and 2.35 mu M, a sensitivity of 1.8 A M-1 cm(-2) and a detection limit of 4 nM. The apparent Michaelis-Menten constant (K-M(app)) M was 7.5 mu M. (c) 2007 Elsevier B.V. All rights reserved.