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2001
Carreira, A, Ferreira LM, Loureiro V.  2001.  Production of brown tyrosine pigments by the yeast Yarrowia lipolytica, MAR. JOURNAL OF APPLIED MICROBIOLOGY. 90:372-379., Number 3 Abstract
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Lodeiro, C, Parola AJ, Pina F, Bazzicalupi C, Bencini A, Bianchi A, Giorgi C, Masotti A, Valtancoli B.  2001.  Protonation and Zn(II) coordination by dipyridine-containing macrocycles with different molecular architecture. A case of pH-controlled metal jumping outside-inside the macrocyclic cavity, 2001. Inorganic Chemistry. 40:2968-2975. AbstractWebsite

The synthesis of the macrocyclic ligand 4,4 '-(2,5,8, 11,14-pentaaza[15])-2,2 ' -bipyridylophane (L3), which contains a pentaamine chain linking the 4,4 ' -positions of a 2,2 ' -dipyridine moiety, is reported. Protonation and Zn(II) complexation by L3 and by macrocycle L2, containing the same pentaamine chain connecting the 6,6 ' -positions of 2,2 ' -dipyridine, were studied by means of potentiometric, UV-vis, and fluorescent emission measurements. While in L2 all the nitrogen donor atoms are convergent inside the macrocyclic cavity, in L3 the heteroaromatic nitrogen atoms are located outside. Both ligands form mono- and dinuclear Zn(II) complexes in aqueous solution. In the mononuclear Zn(II) complexes with L2, the metal is coordinated inside the macrocyclic cavity, bound to the heteroaromatic nitrogen donors and three amine groups of the aliphatic chain. As shown by the crystal structure of the [ZnL2](2+) complex, the two benzylic nitrogens are not coordinated and facile protonation of the complex takes place at slightly acidic pH values. Considering the mononuclear [ZnL3](2+) complex, the metal is encapsulated inside the cavity, not coordinated by the dipyridine unit. Protonation of the complex occurs on the aliphatic polyamine chain and gives rise to translocation of the metal outside the cavity, bound to the, heteroaromatic nitrogens.

Amado, M.  2001.  Patologias do edifício do Grande Auditório da FCT – CAMPUS DA FACULDADE DE CIÊNCIAS E TECNOLOGIA. , Lisbon: Gabinete de Planeamento Físico e Gestão Ambiental da Faculdade de Ciências e Tecnologia da UNL
Antunes, AMM, Marto SJL, Branco PS, Prabhakar S, Lobo AM.  2001.  Palladium(II)-promoted aziridination of olefins with bromamine T as the nitrogen transfer reagent. CHEMICAL COMMUNICATIONS. :405-406., Number 5 Abstract
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Bencini, A, Bianchi A, Giorgi C, Romagnoli E, Lodeiro C, Saint-Maurice A, Pina F, Valtancoli B.  2001.  Photochemical- and pH-switching properties of a new photoelastic ligand based upon azobenzene. Basicity and anion binding. Supramolecular Chemistry. 13:277-285., Number 2 AbstractWebsite
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Costa, SMB, Lopez-Cornejo P, Togashi DM, Laia CAT.  2001.  Photoinduced electron transfer in non-aqueous microemulsions. Journal of Photochemistry and Photobiology a-Chemistry. 142:151-161., Number 2-3 AbstractWebsite
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Bernardo, MA, Alves S, Pina F, de Melo JS, Albelda MT, Garcia-Espana E, Llinares JM, Soriano C, Luis SV.  2001.  Polyamine linear chains bearing two identical terminal aromatic units. Evidence for a photo induced bending movement. Supramolecular Chemistry. 13:435-445., Number 3 AbstractWebsite
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Albelda, MT, Bernardo MA, Diaz P, Garcia-Espana E, de Melo JS, Pina F, Soriano C, Santiago VLE.  2001.  Polyamines containing naphthyl groups as pH-regulated molecular machines driven by light. Chemical Communications. :1520-1521., Number 16 AbstractWebsite
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Almeida, G, Rodrigues C, Lampreia J.  2001.  Proteómica: a Interface entre a Biologia Molecular e a Biochemistry de Proteínas. Bol. Soc. Port. Química. 82:49-56. Abstract
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Carvalho, AL, Dias JM, Sanz L, Romero A, Calvete JJ, Romao MJ.  2001.  Purification, crystallization and identification by X-ray analysis of a prostate kallikrein from horse seminal plasma. Acta Crystallographica Section D-Biological Crystallography. 57:1180-1183. AbstractWebsite
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2000
Prudencio, M, Pereira AS, Tavares P, Besson S, Cabrito I, Brown K, Samyn B, Devreese B, Van Beeumen J, Rusnak F, Fauque G, Moura JJ, Tegoni M, Cambillau C, Moura I.  2000.  Purification, characterization, and preliminary crystallographic study of copper-containing nitrous oxide reductase from Pseudomonas nautica 617, Apr 11. Biochemistry. 39:3899-907., Number 14 AbstractWebsite

The aerobic purification of Pseudomonas nautica 617 nitrous oxide reductase yielded two forms of the enzyme exhibiting different chromatographic behaviors. The protein contains six copper atoms per monomer, arranged in two centers named Cu(A) and Cu(Z). Cu(Z) could be neither oxidized nor further reduced under our experimental conditions, and exhibits a 4-line EPR spectrum (g(x)=2.015, A(x)=1.5 mT, g(y)=2.071, A(y)=2 mT, g(z)=2.138, A(z)=7 mT) and a strong absorption at approximately 640 nm. Cu(A) can be stabilized in a reduced EPR-silent state and in an oxidized state with a typical 7-line EPR spectrum (g(x)=g(y)= 2.021, A(x) = A(y)=0 mT, g(z) = 2.178, A(z)= 4 mT) and absorption bands at 480, 540, and approximately 800 nm. The difference between the two purified forms of nitrous oxide reductase is interpreted as a difference in the oxidation state of the Cu(A) center. In form A, Cu(A) is predominantly oxidized (S = (1)/(2), Cu(1.5+)-Cu(1.5+)), while in form B it is mostly in the one-electron reduced state (S = 0, Cu(1+)-Cu(1+)). In both forms, Cu(Z) remains reduced (S = 1/2). Complete crystallographic data at 2.4 A indicate that Cu(A) is a binuclear site (similar to the site found in cytochrome c oxidase) and Cu(Z) is a novel tetracopper cluster [Brown, K., et al. (2000) Nat. Struct. Biol. (in press)]. The complete amino acid sequence of the enzyme was determined and comparisons made with sequences of other nitrous oxide reductases, emphasizing the coordination of the centers. A 10.3 kDa peptide copurified with both forms of nitrous oxide reductase shows strong homology with proteins of the heat-shock GroES chaperonin family.

Bazzicalupi, C, Bencini A, Bianchi A, Giorgi C, Fusi V, Masotti A, Valtancoli B, Roque A, Pina F.  2000.  pH modulation of the luminescence emission of a new europium cryptate complex. Chemical Communications. :561-562., Number 7 AbstractWebsite
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Melo, MJ, Moura S, Roque A, Maestri M, Pina F.  2000.  Photochemistry of luteolinidin - "Write-lock-read-unlock-erase'' with a natural compound. Journal of Photochemistry and Photobiology a-Chemistry. 135:33-39., Number 1 AbstractWebsite
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Elisei, F, Lima JC, Ortica F, Aloisi GG, Costa M, Leitao E, Abreu I, Dias A, Bonifacio V, Medeiros J, Macanita AL, Becker RS.  2000.  Photophysical properties of hydroxy-substituted flavothiones. Journal of Physical Chemistry a. 104:6095-6102., Number 25 Abstract
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Prudencio, M, Pereira AS, Tavares P, Besson S, Cabrito I, Brown K, Samyn B, Devreese B, Van Beeumen J, Rusnak F, Fauque G, Moura JJG, Tegoni M, Cambillau C, Moura I.  2000.  Purification, characterization, and preliminary crystallographic study of copper-containing nitrous oxide reductase from Pseudomonas nautica 617. Biochemistry. {39}:{3899-3907}., Number {14} Abstract

The aerobic purification of Pseudomonas nautica 617 nitrous oxide reductase yielded two forms of the enzyme exhibiting different chromatographic behaviors. The protein contains six copper atoms per monomer, arranged in two centers named CUA and Cut. Cut could be neither oxidized nor further reduced under our experimental conditions, and exhibits a 4-line EPR spectrum (g(x)= 2.015, A(x) = 1.5 mT, g(y) = 2.071, A(y) = 2 mT, g(z) = 2.138, A(z) = 7 mT) and a strong absorption at similar to 640 nm. Cu-A can be stabilized in a reduced EPR-silent state and in an oxidized state with a typical 7-line EPR spectrum (g(x) g(y) = 2.021, A(x) = A(y) = 0 T, g(z) =0.178, A(z) = 4 mT) and absorption bands at 480, 540, and similar to 800 nm. The difference between the two purified forms of nitrous oxide reductase is interpreted as a difference in the oxidation state of the CuA center. In form A, CUA is predominantly oxidized (S = 1/2, Cu1.5+-Cu1.5+), while in form B it is mostly in the one-electron reduced state (S = 0, Cu1+-Cu1+). In both forms, Cu-Z remains reduced (S = 1/2). Complete crystallographic data at 2.4 Angstrom indicate that Cu-A is a binuclear site (similar to the site found in cytochrome c oxidase) and Cu-Z is a novel tetracopper cluster [Brown, K., et ai. (2000) Nat. Struct. Biol. (in press)]. The complete amino acid sequence of the enzyme was determined and comparisons made with sequences of other nitrous oxide reductases, emphasizing the coordination of the centers. A 10.3 kDa peptide copurified with both forms of nitrous oxide reductase shows strong homology with proteins of the heat-shock GroES chaperonin family.

1999
Almendra, MJ, Brondino CD, Gavel O, Pereira AS, Tavares P, Bursakov S, Duarte R, Caldeira J, Moura JJ, Moura I.  1999.  Purification and characterization of a tungsten-containing formate dehydrogenase from Desulfovibrio gigas, Dec 7. Biochemistry. 38:16366-72., Number 49 AbstractWebsite

An air-stable formate dehydrogenase (FDH), an enzyme that catalyzes the oxidation of formate to carbon dioxide, was purified from the sulfate reducing organism Desulfovibrio gigas (D. gigas) NCIB 9332. D. gigas FDH is a heterodimeric protein [alpha (92 kDa) and beta (29 kDa) subunits] and contains 7 +/- 1 Fe/protein and 0.9 +/- 0.1 W/protein. Selenium was not detected. The UV/visible absorption spectrum of D. gigas FDH is typical of an iron-sulfur protein. Analysis of pterin nucleotides yielded a content of 1.3 +/- 0.1 guanine monophosphate/mol of enzyme, which suggests a tungsten coordination with two molybdopterin guanine dinucleotide cofactors. Both Mossbauer spectroscopy performed on D. gigas FDH grown in a medium enriched with (57)Fe and EPR studies performed in the native and fully reduced state of the protein confirmed the presence of two [4Fe-4S] clusters. Variable-temperature EPR studies showed the presence of two signals compatible with an atom in a d(1) configuration albeit with an unusual relaxation behavior as compared to the one generally observed for W(V) ions.

Pina, F, Parola AJ.  1999.  Photochemistry of supramolecular species involving anionic coordination compounds and polyammonium macrocyclic receptors, 1999. Coordination Chemistry Reviews. 185-6:149-165. AbstractWebsite

Polyammonium macrocyclic receptors can bind anionic coordination compounds, namely those containing cyanide ligands. The;driving force to maintain the adduct is essentially the coulombic attraction, but the possibility of formation of hydrogen bonds is also important to define the geometry of the structure. The second coordination sphere that results from the binding of the polyammonium macrocycle can change several physicochemical properties of the metal coordination-compound, such as spectroscopic, redox and photophysical properties as well as the photochemical reactivity. These. changes permit:to infer, in some favourable cases, details of the supramolecular structure in solution. (C) 1999 Elsevier Science S.A. All rights reserved.

Pina, F, Melo MJ, Maestri M, Passaniti P, Camaioni N, Balzani V.  1999.  Photo- and pH-Induced transformations of flavylium cation: "Write-lock-read-unlock-erase" cycles. European Journal of Organic Chemistry. :3199-3207., Number 11 AbstractWebsite
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Pina, F, Maestri M, Balzani V.  1999.  Photochromic flavylium compounds as multistate/multifunction molecular-level systems. Chemical Communications. :107-114., Number 2 AbstractWebsite
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Melo, MJ, Bracci S, Camaiti M, Chiantore O, Piacenti F.  1999.  Photodegradation of acrylic resins used in the conservation of stone. Polymer Degradation and Stability. 66:23-30., Number 1 AbstractWebsite
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Osuka, A, Kume T, Haggquist GW, Javorfi T, Lima JC, Melo E, Naqvi KR.  1999.  Photophysical characteristics of two model antenna systems: a fucoxanthin-pyropheoporbide dyad and its peridinin analogue. Chemical Physics Letters. 313:499-504., Number 3-4 Abstract
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Romao, MJ, Carvalho AL, Dias JM, Teixeira S, Bourenkov G, Bartunik H, Huber R, Maia L, Mira L.  1999.  Preliminary crystallographic studies of xanthine oxidase purified from rat liver. Journal of Inorganic Biochemistry. 74:281-281., Number 1-4 AbstractWebsite
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Laia, CAT, Costa SMB.  1999.  Probing the interface polarity of AOT reversed micelles using centro-symmetrical squaraine molecules. Physical Chemistry Chemical Physics. 1:4409-4416., Number 18 AbstractWebsite
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Chiarelli, MP, Wu HP, Antunes AM, Branco PS.  1999.  Product ion studies of some novel arylamine adducts of deoxyguanosine by matrix-assisted laser desorption/ionization and post-source decay. RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 13:2004-2010., Number 20 Abstract
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Almendra, MJ, Brondino CD, Gavel O, Pereira AS, Tavares P, Bursakov S, Duarte R, Caldeira J, Moura JJG, Moura I.  1999.  Purification and characterization of a tungsten-containing formate dehydrogenase from Desulfovibrio gigas. Biochemistry. {38}:{16366-16372}., Number {49} Abstract

An air-stable formate dehydrogenase (FDH), an enzyme that catalyzes the oxidation of formate to carbon dioxide, was purified from the sulfate reducing organism Desulfovibrio gigas (D. gigas) NCIB 9332. D. gigas FDH is a heterodimeric protein [alpha (92 kDa) and beta (29 kDa) subunits] and contains 7 +/- 1 Fe/protein and 0.9 +/- 0.1 W/protein, Selenium was not detected. The UV/visible absorption spectrum of D, gigas FDH is typical of an iron-sulfur protein. Analysis of pterin nucleotides yielded a content of 1.3 +/- 0.1 guanine monophosphate/mol of enzyme, which suggests a tungsten coordination with two molybdopterin guanine dinucleotide cofactors. Both Mossbauer spectroscopy performed on D. gigas FDH grown in a medium enriched with Fe-57 and EPR studies performed in the native and fully reduced state of the protein confirmed the presence of two [4Fe-4S] clusters. Variable-temperature EPR studies showed the presence of two signals compatible with an atom in a d(1) configuration albeit with an unusual relaxation behavior as compared to the one generally observed for W(V) ions.

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