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2011
Ivanova, G, Simeonova M, Cabrita EJ, Rangel M.  2011.  NMR Insight into the Supramolecular Structure of Daunorubicin Loaded Polymer Nanoparticles, FEB 10 2011. Journal of Physical Chemistry B. 115:902-909., Number 5 Abstract

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Cordas, CM, Raleiras P, Auchère F, Moura I, Moura JJG.  2011.  Comparative electrochemical study of superoxide reductases, Dec 06. Eur. Biophys. J.. 41:209-215., Number 2 AbstractWebsite

... CM Cordas (&) Á P . Raleiras Á F . Auche`re Á I. Moura Á JJG Moura ... de Quımica, Universidade Nova de Lisboa, 2859-516 Caparica, Portugal e-mail: cristina. cordas @dq.fct ... Present Address: P . Raleiras Department of Photochemistry and Molecular Science, PO Box 523, 75120 ...

Ramos, S, Moura JJ, Aureliano M.  2011.  Actin as a potential target for decavanadate, Dec. J Inorg Biochem. 104:1234-9., Number 12 AbstractWebsite

ATP prevents G-actin cysteine oxidation and vanadyl formation specifically induced by decavanadate, suggesting that the oxometalate-protein interaction is affected by the nucleotide. The ATP exchange rate is increased by 2-fold due to the presence of decavanadate when compared with control actin (3.1x10(-3) s(-1)), and an apparent dissociation constant (k(dapp)) of 227.4+/-25.7 muM and 112.3+/-8.7 muM was obtained in absence or presence of 20 muM V(10), respectively. Moreover, concentrations as low as 50 muM of decameric vanadate species (V(10)) increases the relative G-actin intrinsic fluorescence intensity by approximately 80% whereas for a 10-fold concentration of monomeric vanadate (V(1)) no effects were observed. Upon decavanadate titration, it was observed a linear increase in G-actin hydrophobic surface (2.6-fold), while no changes were detected for V(1) (0-200 muM). Taken together, three major ideas arise: i) ATP prevents decavanadate-induced G-actin cysteine oxidation and vanadate reduction; ii) decavanadate promotes actin conformational changes resulting on its inactivation, iii) decavanadate has an effect on actin ATP binding site. Once it is demonstrated that actin is a new potential target for decavanadate, being the ATP binding site a suitable site for decavanadate binding, it is proposed that some of the biological effects of vanadate can be, at least in part, explained by decavanadate interactions with actin.

Mota, CS, Rivas MG, Brondino CD, Moura I, Moura JJ, Gonzalez PJ, Cerqueira NM.  2011.  The mechanism of formate oxidation by metal-dependent formate dehydrogenases, Dec. J Biol Inorg Chem. 16:1255-68., Number 8 AbstractWebsite

Metal-dependent formate dehydrogenases (Fdh) from prokaryotic organisms are members of the dimethyl sulfoxide reductase family of mononuclear molybdenum-containing and tungsten-containing enzymes. Fdhs catalyze the oxidation of the formate anion to carbon dioxide in a redox reaction that involves the transfer of two electrons from the substrate to the active site. The active site in the oxidized state comprises a hexacoordinated molybdenum or tungsten ion in a distorted trigonal prismatic geometry. Using this structural model, we calculated the catalytic mechanism of Fdh through density functional theory tools. The simulated mechanism was correlated with the experimental kinetic properties of three different Fdhs isolated from three different Desulfovibrio species. Our studies indicate that the C-H bond break is an event involved in the rate-limiting step of the catalytic cycle. The role in catalysis of conserved amino acid residues involved in metal coordination and near the metal active site is discussed on the basis of experimental and theoretical results.

Vilas-Boas, V, Silva R, Vieira C, Martins I, Ferreira L, Branco P, Remiao F.  2011.  P-glycoprotein activity assessment in rat brain endothelial cells-A search for new rifampicin-derived p-glycoprotein inducers, AUG 28. TOXICOLOGY LETTERS. 205:S94-S95., Number 1: European Soc Toxicol Abstract
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Paes de Sousa, PM, Rodrigues D, Timoteo CG, Simoes Goncalves ML, Pettigrew GW, Moura I, Moura JJ, Correia dos Santos MM.  2011.  Analysis of the activation mechanism of Pseudomonas stutzeri cytochrome c peroxidase through an electron transfer chain, Aug. J Biol Inorg Chem. 16:881-8., Number 6 AbstractWebsite

The activation mechanism of Pseudomonas stutzeri cytochrome c peroxidase (CCP) was probed through the mediated electrochemical catalysis by its physiological electron donor, P. stutzeri cytochrome c-551. A comparative study was carried out, by performing assays with the enzyme in the resting oxidized state as well as in the mixed-valence activated form, using cyclic voltammetry and a pyrolytic graphite membrane electrode. In the presence of both the enzyme and hydrogen peroxide, the peak-like signal of cytochrome c-551 is converted into a sigmoidal wave form characteristic of an E(r)C'(i) catalytic mechanism. An intermolecular electron transfer rate constant of (4 +/- 1) x 10(5) M(-1) s(-1) was estimated for both forms of the enzyme, as well as a similar Michaelis-Menten constant. These results show that neither the intermolecular electron transfer nor the catalytic activity is kinetically controlled by the activation mechanism of CCP in the case of the P. stutzeri enzyme. Direct enzyme catalysis using protein film voltammetry was unsuccessful for the analysis of the activation mechanism, since P. stutzeri CCP undergoes an undesirable interaction with the pyrolytic graphite surface. This interaction, previously reported for the Paracoccus pantotrophus CCP, induces the formation of a non-native conformation state of the electron-transferring haem, which has a redox potential 200 mV lower than that of the native state and maintains peroxidatic activity.

Oliveira, J, Petrov V, Parola AJ, Pina F, Azevedo J, Teixeira N, Bras NF, Fernandes PA, Mateus N, Ramos MJ, de Freitas V.  2011.  Chemical Behavior of Methylpyranomalvidin-3-O-glucoside in Aqueous Solution Studied by NMR and UV-Visible Spectroscopy, 2011. Journal of Physical Chemistry B. 115:1538-1545. AbstractWebsite

In the present work, the proton-transfer reactions of the methylpyranomalvidin-3-O-glucoside pigment in water with different pH values was studied by NMR and UV-visible spectroscopies. The results showed four equilibrium forms: the methylpyranomalvidin-3-O-glucoside cation, the neutral quinoidal base, the respective anionic quinoidal base, and a dianionic base unprotonated at the methyl group. According to the NMR data, it seems that for methylpyranomalvidin-3-O-glucoside besides the acid base equilibrium between the pyranoflavylium cation and the neutral quinoidal base, a new species is formed at pD 4.88-6.10. This is corroborated by the appearance of a new set of signals in the NMR spectrum that may be assigned to the formation of hemiketal/cis-chalcone species to a small extent. The two ionization constants (pK(a1) and pK(a2)) obtained by both methods (NMR and UV-visible) for methylpyranomalvidin-3-O-glucoside are in agreement (pK(a1) = 5.17 +/- 0.03; pK(a2) = 8.85 +/- 0.08; and pK(a1) = 4.57 +/- 0.07; pK(a2) = 8.23 +/- 0.04 obtained by NMR and UV-visible spectroscopies, respectively). Moreover, the fully dianionic unprotonated form (at the methyl group) of the methylpyranomalvidin-3-O-glucoside is converted slowly into a new structure that displays a yellow color at basic pH. On the basis of the results obtained through LC-MS and NMR, the proposed structure was found to correspond to the flavonol syringetin-3-glucoside.

Amado, M, Ribeiro R.  2011.  Urban Sprawl promoted through Master Planning Process, 18 Oct. SB11 World Sustainable Building Conference. , Helsinki Abstract

The urban sprawl phenomenon has been raise in the last three decades. In the same time all municipalities have adopted the methodology of the master planning to program the land use. In the same time the well-being in cities have decreased and the life quality of population is dreadful so is urgent the promotion of a new process to planning the transformation of existing urban areas and program new areas. The aim of this paper is the proposal of a new process to be adopted to the master planning.

Amado, M, Lopes T, Correia de Freitas J, Ribeiro R.  2011.  Avaliação da Sustantabilidade do Plano Director Municipal, 1, Sept.. 6º Congresso Luso-Moçambicano de Engenharia. , Maputo
Delgado, J, Ruivo A, Corregidor V, da Silva RC, Alves LC, Vilarigues M.  2011.  Characterisation of medieval yellow silver stained glass from Convento de Cristo in Tomar, Portugal. Nuclear Instruments and Methods B. 269( 20):2383-2388.
Quintas, F, Ruivo A, Queiroz C, de Matos PA.  2011.  Contemporary stained glass using luminescent materials. Proceedings Glass Science in Art and Conservation. :35-38., Bronnbach Monastery, Germany
Gromicho, M, Dinis J, Magalhaes M, Fernandes AR, Tavares P, Laires A, Rueff J, Rodrigues AS.  2011.  Development of imatinib and dasatinib resistance: dynamics of expression of drug transporters ABCB1, ABCC1, ABCG2, MVP, and SLC22A1. Leuk Lymphoma. 52(10):1980-90.11gromicholl.pdf
Barbosa, PC, Fernandes M, Vilela SMF, Goncalves A, Oliveira MC, Fortunato E, Silva MM, Smith MJ, Rego R, Bermudez VD.  2011.  Di-Ureasil Hybrids Doped with LiBF4: Attractive Candidates as Electrolytes for "Smart Windows". Int. J. Electrochem. Sci. . 6:3355-3374.
Parthiban, S, Elangovan E, Ramamurthi K, Kanjilal D, Asokan K, Martins R, Fortunato E.  2011.  Effect of Li3+ heavy ion irradiation on the Mo doped In2O3 thin films prepared by spray pyrolysis technique. J. Phys. D-Appl. Phys.. 44(085404)
Ramos, S, Almeida RM, Moura JJ, Aureliano M.  2011.  Implications of oxidovanadium (IV) binding to actin. Eur J Inorg Chem. 105(6):777.
Almeida, T, Ruivo A, de Matos AP.  2011.  Luminescent enamels: palette of colours. An interface between art/science in the creation of glass works. Proceedings Glass Science in Art and Conservation. :35-38., Bronnbach Monastery, Germany
Correia, C, Rodrigues M, Silveira CM, Moura JJG, Ochoteco E, Jubete E, Almeida MG.  2011.  Nitrite biosensing using cytochrome c nitrite reductase: Towards a disposable strip electrode. Biomedical Engineering Systems and Technologies. Series: Communications in Computer and Information Science. : Springer
Merino, EG, Rodrigues C, Viciosa TM, Melo C, Sotomayor J, Dionísio M, Correia NT.  2011.  Phase Transformations Undergone by Triton X-100 Probed by Differential Scanning Calorimetry and Dielectric Relaxation Spectroscopy. Physical Chemistry B. 12336(1):12336–12347. AbstractWebsite

The phase transformations of the surfactant Triton X-100 were investigated by differential scanning calorimetry (DSC), polarized optical microscopy (POM), and dielectric relaxation spectroscopy (DRS). In particular, crystallization was induced at different cooling rates comprised between 13 and 0.5 K min–1. Vitrification was detected by both DSC and DRS techniques with a glass transition temperature of 212 K (measured on heating by DSC) allowing classifying Triton X-100 as a glass former. A fully amorphous material was obtained by cooling at a rate ≥10 K min–1, while crystallization was observed for lower cooling rates. The temperature of the onset of melt-crystallization was found to be dependent on the cooling scan rate, being higher the lower was the scan rate. In subsequent heating scans, the material undergoes cold-crystallization except if cooled previously at a rate ≤1 K min–1. None of the different thermal histories led to a 100% crystalline material because always the jump typical of the glass transformation in both heat flux (DSC) and real permittivity (DRS) is observed. It was also observed that the extent/morphology of the crystalline phase depends on the degree of undercooling, with higher spherulites developing for lower undercooling degree (24 K ≤ Tm – Tcr ≤ 44 K) in melt-crystallization and a grain-like morphology emerging for Tm – Tcr ≈ 57 K either in melt- or cold-crystallization. The isothermal cold- and melt-crystallizations were monitored near above the calorimetric glass transition temperature by POM (221 K) and real-time DRS (Tcr = 219, 220, and 221 K) to evaluate the phase transformation from an amorphous to a semicrystalline material. By DRS, the α-relaxation associated with the dynamic glass transition was followed, with the observation that it depletes upon both type of crystallizations with no significant changes either in shape or in location. Kinetic parameters were obtained from the time evolution of the normalized permittivity according to a modified Avrami model taking in account the induction time. The reason the isothermal crystallization occurs to a great extent in the vicinity of the glass transition was rationalized as the simultaneous effect of (i) a high dynamic fragile behavior and (ii) the occurrence of catastrophic nucleation/crystal growth probably enabled by a preordering tendency of the surfactant molecules. This is compatible with the estimated low Avrami exponent (1.12 ≤ n ≤ 1.6), suggesting that relative short length scale motions govern the crystal growth in Triton X-100 coherent with the observation of a grainy crystallization by POM.

Borlido, L, Azevedo AM, Roque ACA, Aires-Barros MR.  2011.  Potential of boronic acid functionalized magnetic particles in the adsorption of human antibodies under mammalian cell culture conditions. Journal of Chromatography A. 1218(43):7821-7827. AbstractWebsite

In this work, we systematically evaluated the potential of using boronic acid functionalized magnetic particles in the capturing of human immunoglobulin G under typical mammalian cell culture conditions. For comparison, Protein A coated magnetic particles were also used. The binding pH was found to significantly influence the adsorption isotherms of boronic acid particles with the higher capacities (0.216 g IgG/g support) being observed at pH 7.4. Comparatively, this value was 0.109 g IgG/g support, for Protein A particles under the same conditions. Both particles revealed very fast adsorption kinetics with more than 70% of the maximum binding capacity being achieved in a few seconds. The effect of glucose and lactate, which are known to interact with boronic acid, was evaluated. For glucose, the binding capacity was significantly influenced by the pH and decreased as pH increased. At pH 9.5, a 70% lower binding capacity was observed for glucose concentrations as low as 0.5 g/l. The effect of lactate was less pronounced and almost pH independent reaching at most 20% decrease in binding capacity. Nevertheless, the effect of both molecules was always lower at pH 7.4. The optimization of the elution conditions enabled complete recovery of bound IgG from boronic acid particles using 50mM Tris-HCl, 200 mM sorbitol, 200 mM NaCl at pH 8.5.

Vilarigues, M, Delgado J, Redol P.  2011.  Stained glass from the Convent of Christ in Tomar, Portugal: history and characterization. Journal of Glass Studies. 58:246-251.
Goncalves A., Costa C., Pereira S., Correia N., M.M. S, Barbosa P.C., L.C. R, Henriques I., R. M, Fortunato E..  2011.  Study of electrochromic devices with nanocomposites polymethacrylate hydroxyethylene resin based electrolyte. Polym. Adv. Technol.. 23:791–795.
Henriques, MX, Rodrigues T, Carido M, Ferreira L, Filipe SR.  2011.  Synthesis of capsular polysaccharide at the division septum of Streptococcus pneumoniae is dependent on a bacterial tyrosine kinase. Mol. Microbiol. 82:515-534.
de Sa, MH, Ferreira JL, Melo MJ, Ramos AM.  2011.  An AFM contribution to the understanding of surface effects caused by ageing and cleaning on acrylic glass. The Shadows by Lourdes Castro, a case study. Surface and Interface Analysis. 43:1165-1170., Number 8 AbstractWebsite
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de Sa, MH, Eaton P, Ferreira JL, Melo MJ, Ramos AM.  2011.  Ageing of vinyl emulsion paints - an atomic force microscopy study. Surface and Interface Analysis. 43:1160-1164., Number 8 AbstractWebsite
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Lima, JC, Rodriguez L.  2011.  Applications of gold(I) alkynyl systems: a growing field to explore. Chemical Society Reviews. 40:5442-5456., Number 11 Abstract
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