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2018
Giancristofaro, A, Barbosa AJM, Ammazzalorso A, Amoia P, Filippis BD, Fantacuzzi M, Giampietro L, Maccallinia C, Amoroso R.  2018.  Discovery of new FXR agonists based on 6-ECDCA binding properties by virtual screening and molecular docking. MedChemComm. (9):1630-1638.Website
Carvalho, LC, Queda F, Almeida CV, Filipe SR, Marques MMM.  2018.  From a natural polymer to relevant NAG-NAM precursors. Asian J Org Chem.. 7(12):2544-2551.
Reckien, D, Heidrich O, Church J, Pietrapertos F, De Gregorio-Hurtado S, D'Alonzo V, Foley A, Simoes SG, Lorencová EK, Orruk H, Orrum K, Wejs A, Flacke J, Olazabal M, Geneletti D, Feliu E, Vasilier S, Nador C, Krook-Riekkola A, Matosović M, A. Fokaides P, I. Ioannou B, Flamos A, Spyridaki N.  2018.  How are cities planning to respond to climate change? Assessment of local climate plans from 885 cities in the EU-28 Journal of Cleaner Production. doi: 10.1016/j.jclepro.2018.03.220. 191:207-219.
Rosa, V, Gaspari A, Folgosa F, Cordas CM, Tavares P, Santos-Silva T, Barroso S, Avilés T.  2018.  Imine Ligands Based on Ferrocene: Synthesis, Structural and Mössbauer Characterization and Evaluation as Chromogenic and Electrochemical Sensors for Hg+2. New J Chem. 42:3334-3343.Website
Simoes, S, Dias L, Gouveia JP, Seixas J, De Miglio R, A. C, M. G, Long G, Giannakidis G.  2018.  INSMART – Insights on integrated modelling of EU cities energy system transition. Energy Strategy Reviews. 20:150–155.
Beira, JM, Silva MP, Condesso M, Cosme P, Almeida PL, Corvo M, Sebastião PJ, Figueirinhas JL, de Pinho MN.  2018.  Molecular order and dynamics of water in hybrid cellulose acetate–silica asymmetric membranes. Molecular Physics. :1–8.: Taylor & Francis AbstractWebsite

In this work 2H NMR spectroscopy and 1H NMR relaxometry and diffusometry were used to characterise water order and dynamics in cellulose acetate/silica asymmetric membranes. Two hydrated membranes were characterised allowing the identification of extra ordering of the water molecules and the presence in each membrane of up to two spectral components with different degrees of order and different T1 values. The mechanism behind this order increase was ascribed to the rapid exchange of the water molecules between the pore walls and its interior. T1 relaxometry dispersions allowed for the identification of the relevant mechanisms of pore-confined water motion, with rotations mediated by translational displacements (RMTD) as the dominant mechanism in the low frequency region. Using the RMTD low cut off frequency along with the in situ directly measured diffusion constant it was possible do determine characteristic lengths of correlated water motion in both membranes studied, which fall in ranges compatible with typical pore dimensions in similar membranes.

Rocha, AM, Machado G, Almeida T.  2018.  New approaches in glass printing with decal technology and luminescent glass enamels. IMPACT 10 Conference. :82-85., Santander, Spain
Almeida, T.  2018.  O vidro enquanto material e o vidro enquanto arte. Specularis - looking through. (Teresa Almeida, Machado, Graciela, Eds.)., Porto: i2ADS - Instituto de Investigação em Arte, Design e Sociedade Faculdade de Belas Artes da Universidade do Porto
Salvia, M, Simoes S, Fueyo N, Cosmi C, Papadopoulou K, Gouveia JP, et al.  2018.  The PrioritEE Approach to Reinforce the Capacities of Local Administrations in the Energy Management of Public Buildings. New Metropolitan Perspectives. ISHT 2018. Smart Innovation, Systems and Technologies, Springer. 101
Almeida, T,(ed) MG.  2018.  Specularis - looking through. , Porto: i2ADS - Instituto de Investigação em Arte, Design e Sociedade & Faculdade de Belas Artes da Universidade do Porto Website
Branco, PS, Peixoto D, Figueiredo M, Malta G, Roma-Rodrigues C, Batista PV, Fernandes AR, Barroso S, Carvalho AL, Afonso CAM, Ferreira LM.  2018.  Synthesis, cytotoxicity evaluation in human cell lines and in vitro DNA interaction of a hetero arylidene-9(10H)-anthrone. European Journal of Organic Chemistry. :n/a–n/a. AbstractWebsite

A new and never yet reported hetero arylidene-9(10H)-anthrone structure (4) was unexpectedly isolated on reaction of 1,2-dimethyl-3-ethylimidazolium iodide (2) and 9-anthracenecarboxaldehyde (3) under basic conditions. Its structure was unequivocally attributed by X-ray crystallography. No cytotoxicity in human healthy fibroblasts and in two different cancer cell lines was observed indicating its applicability in biological systems. Compound 4 interacts with CT-DNA by intercalation between the adjacent base pairs of DNA with a high binding affinity (Kb = 2.0(± 0.20) x 105 M-1) which is 10x higher than that described for doxorubicin (Kb = 3.2 (±0.23) × 104 M-1). Furthermore, compound 4 quenches the fluorescence emission of GelRed-CT-DNA system with a quenching constant (KSV) of 3.3(±0.3) x 103 M-1 calculated by the Stern-Volmer equation.

Samhan-Arias, AK, Almeida RM, Ramos S, Cordas CM, Moura I, Gutierrez-Merino C, Moura JJG.  2018.  Topography of human cytochrome b5/cytochrome b5 reductase interacting domain and redox alterations upon complex formation. Biochim Biophys Acta. 1859:78-87.
dos Santos, LM, Ligabue R, Dumas A, Le Roux C, Micoud P, Meunier J-F, Martin F, Corvo M, Almeida P, Einloft S.  2018.  Waterborne polyurethane/Fe3O4-synthetic talc composites: synthesis, characterization, and magnetic properties. Polymer Bulletin. :1–16.: Springer Berlin Heidelberg AbstractWebsite

Nano-Fe3O4-synthetic talc gel was used as filler in the synthesis of waterborne polyurethane/Fe3O4-synthetic talc nanocomposites. This filler presents numerous edges (Si–O and Mg–O) and OH groups easily forming hydrogen bonds and polar interaction with water conferring hydrophilic character, consequently improving filler dispersion within a water-based matrix. Yet, the use of waterborne polyurethane (WPU) as matrix must be highlighted due to its environmentally friendly characteristics and low toxicity compared to solvent-based product. Fe3O4-synthetic talc-nanofillers were well dispersed into the polyurethane matrix even at high filler content as supported by XRD and TEM analyses. NMR indicates the interaction of filler OH groups with the matrix. For all nanocomposites, one can see a typical ferromagnetic behavior below Curie temperature (about 120 K) and a superparamagnetic behavior above this temperature. The use of Fe3O4-synthetic talc for obtaining magnetic nanocomposites resulted in improved materials with superior mechanical properties compared to solvent-based nanocomposites.

Pinto, ACM, Sanjad TABC, Angélica RS, da Costa ML, Paiva RS, Palomar T.  2018.  19th century stained-glass windows from Belém do Pará (Brazil): Analytical characterisation and pathology. Boletín de la Sociedad Española de Cerámica y Vidrio. 57:133-141., Number 4 AbstractWebsite

The aim of this work was to determine the physico-chemical characteristics of the stained-glass windows into the 19th century of two mausoleums located in the city of Belém do Pará (Brazil), and to evaluate their state of conservation. The glass chemical composition was determined by WXRF and SEM/EDS. The samples’ morphology and the microorganisms’ identification were carried out by optical microscopy. The results indicated that the samples were soda-lime silicate glass, with approximately 70wt. % of SiO2, which contributed to the resistance of the stained glass to the weathering. The concentration of Na2O was normally twice the K2O, which contrasts with the composition of other panels produced during the same period, as reported in the literature. The biofilm is composed by cyanobacteria and rotifers. Overall, the panels analysed were in a good state of conservation, despite their exposure to tropical climate conditions for more than a century with no preventive measures whatsoever. Resumen El objetivo del presente trabajo fue determinar las características físico-químicas de las vidrieras del siglo XIX correspondientes a dos mausoleos ubicados en la ciudad de Belém do Pará (Brasil) para evaluar su estado de conservación. La composición química del vidrio fue determinada por WXRF y SEM/EDS. La morfología de las muestras y la identificación de los microorganismos fueron realizadas por microscopia óptica. Los resultados indicaron que las muestras eran vidrios de silicato sódico-cálcico, con aproximadamente el 70% en peso de SiO2, lo que aumentó la resistencia a la corrosión de los vidrios de estas vidrieras. La concentración de Na2O fue normalmente el doble que de K2O, lo que contrasta con la composición de otros paneles producidos durante el mismo período, de acuerdo con la literatura. El biofilm presentó cianobacterias y rotíferas. En general, los paneles analizados presentaban un buen estado de conservación, a pesar de su exposición a las condiciones climáticas tropicales durante más de un siglo, sin las medidas de conservación preventivas.

Gomes, AS, Trovão F, Andrade Pinheiro B, Freire F, Gomes S, Oliveira C, Domingues L, Romão MJ, Saraiva L, Carvalho AL.  2018.  The Crystal Structure of the R280K Mutant of Human p53 Explains the Loss of DNA Binding. International Journal of Molecular Sciences. 19, Number 4}, ARTICLE NUMBER = {1184 AbstractWebsite

The p53 tumor suppressor is widely found to be mutated in human cancer. This protein is regarded as a molecular hub regulating different cell responses, namely cell death. Compelling data have demonstrated that the impairment of p53 activity correlates with tumor development and maintenance. For these reasons, the reactivation of p53 function is regarded as a promising strategy to halt cancer. In the present work, the recombinant mutant p53R280K DNA binding domain (DBD) was produced for the first time, and its crystal structure was determined in the absence of DNA to a resolution of 2.0 Å. The solved structure contains four molecules in the asymmetric unit, four zinc(II) ions, and 336 water molecules. The structure was compared with the wild-type p53 DBD structure, isolated and in complex with DNA. These comparisons contributed to a deeper understanding of the mutant p53R280K structure, as well as the loss of DNA binding related to halted transcriptional activity. The structural information derived may also contribute to the rational design of mutant p53 reactivating molecules with potential application in cancer treatment.

T. Vicente, A, Araujo A, Mendes MJ, Nunes D, Oliveira MJ, Sanchez-Sobrado O, Ferreira MP, Aguas H, Fortunato E, Martins R.  2018.  Multifunctional cellulose-paper for light harvesting and smart sensing applications. J. Mater. Chem. C. 6:3143-3181.: The Royal Society of Chemistry AbstractWebsite

A novel generation of flexible opto-electronic smart applications is now emerging{,} incorporating photovoltaic and sensing devices driven by the desire to extend and integrate such technologies into a broad range of low cost and disposable consumer products of our everyday life and as a tool to bring together the digital and physical worlds. Several flexible polymeric materials are now under investigation to be used as mechanical supports for such applications. Among them{,} cellulose{,} the most abundant organic polymer on the Earth{,} commonly used in the form of paper{,} has attracted much research interest due to the advantages of being recyclable{,} flexible{,} lightweight{,} biocompatible and extremely low-cost{,} when compared to other materials. Cellulose substrates can be found in many forms{,} from the traditional micro-cellulose paper used for writing{,} printing and food/beverage packaging (e.g. liquid packaging cardboard){,} to the nano-cellulose paper which has distinct structural{,} optical{,} thermal and mechanical properties that can be tailored to its end use. The present article reviews the state-of-the-art related to the integration and optimization of photonic structures and light harvesting technologies on paper-based platforms{,} for applications such as Surface Enhanced Raman Scattering (SERS){,} supporting remarkable 107 signal enhancement{,} and photovoltaic solar cells reaching [similar]5% efficiency{,} for power supply in standalone applications. Such paper-supported technologies are now possible due to innovative coatings that functionalize the paper surfaces{,} together with advanced light management solutions (e.g. wave-optical light trapping structures and NIR-to-visible up-converters). These breakthroughs open the way for an innovative class of disposable opto-electronic products that can find widespread use and bring important added value to existing commercial products. By making these devices ubiquitous{,} flexible and conformable to any object or surface{,} will also allow them to become part of the core of the Internet of Things (IoT) revolution{,} which demands systems{'} mobility and self-powering functionalities to satisfy the requirements of comfort and healthcare of the users.

Afonso, D, Ribeiro AFG, Araújo P, Vital J, Madeira LM.  2018.  Phenol in Mixed Acid Benzene Nitration Systems. Industrial & Engineering Chemistry Research. 57:15942-15953., Number 46 AbstractWebsite
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Larsen, SR, Hansteen M, Pacakova B, Theodor K, Arnold T, Rennie AR, Helgesen G, Knudsen KD, Bordallo HN, Fossum JO, Cavalcanti LP.  2018.  Sample Cell for Studying Liquid Interfaces with an {\emph{in Situ}} Electric Field Using {{X}}-Ray Reflectivity and Application to Clay Particles at Oil–{}Oil Interfaces. Journal of Synchrotron Radiation. 25:915-917., Number 3 Abstract
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Araújo, A, Mendes MJ, Mateus T, Costa J, Nunes D, Fortunato E, Águas H, Martins R.  2018.  Ultra-fast plasmonic back reflectors production for light trapping in thin Si solar cells. Solar Energy. 174:786-792. AbstractWebsite

A fast method is presented to fabricate plasmonic light trapping structures in just ten minutes (>5 × faster than the present state of art), with excellent light scattering properties. The structures are composed of silver nanoparticles (Ag NPs) deposited by thermal evaporation and self-assembled using a rapid thermal annealing (RTA) system. The effect of the RTA heating rate on the NPs production reveals to be crucial to the decrease of the annealing process. The Ag NPs are integrated in thin film silicon solar cells to form a plasmonic back reflector (PBR) that causes a diffused light reflectivity in the near-infrared (600–1100 nm wavelength region). In this configuration the thicknesses of the AZO spacer/passivating layers between NPs and rear mirror, and between NPs and silicon layer, play critical roles in the near-field coupling of the reflected light towards the solar cell absorber, which is investigated in this work. The best spacer thicknesses were found to be 100 and 60 nm, respectively, for Ag NPs with preferential sizes of about 200 nm. The microcrystalline silicon (μc-Si:H) solar cells deposited on such improved PBR demonstrate an overall 11% improvement on device efficiency, corresponding to a photocurrent of 24.4 mA/cm2 and an efficiency of 6.78%, against 21.79 mA/cm2 and 6.12%, respectively, obtained on flat structures without NPs.

2017
Raposo, {LR }, Roma-Rodrigues C, Faísca P, Alves M, Henriques J, Carvalheiro {MC }, Corvo {ML }, Baptista {PV }, Pombeiro {AJ }, Fernandes {AR }.  2017.  Immortalization and characterization of a new canine mammary tumour cell line FR37-CMT, sep. Veterinary and Comparative Oncology. 15:952–967., Number 3: Wiley-Blackwell Abstract

Here we describe the establishment of a new canine mammary tumour (CMT) cell line, FR37-CMT that does not show dependence on female hormonal signaling to induce tumour xenografts in NOD-SCID mice. FR37-CMT cell line has a stellate or fusiform shape, displays the ability to reorganize the collagen matrix, expresses vimentin, CD44 and shows the loss of E-cadherin which is considered a fundamental event in epithelial to mesenchymal transition (EMT). The up-regulation of ZEB1, the detection of phosphorylated ERK1/2 and the downregulation of DICER1 and miR-200c are also in accordance with the mesenchymal characteristics of FR37-CMT cell line. FR37-CMT shows a higher resistance to cisplatin (IC50>50 µM) and to doxorubicin (IC50>5.3 µM) compared with other CMT cell lines. These results support the use of FR37-CMT as a new CMT model that may assist the understanding of the molecular mechanisms underlying EMT, CMT drug resistance, fostering the development of novel therapies targeting CMT.

Fonseca, DA, Guerra AF, Carvalho F, Fernandes E, Ferreira LM, Branco PS, Antunes PE, Antunes MJ, Cotrim MD.  2017.  Hyperthermia Severely Affects the Vascular Effects of MDMA and Metabolites in the Human Internal Mammary Artery In Vitro, OCT. CARDIOVASCULAR TOXICOLOGY. 17:405-416., Number 4 Abstract
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Kryshtafovych, A, Albrecht R, Baslé A, Bule P, Caputo AT, Carvalho AL, Chao KL, Diskin R, Fidelis K, Fontes CMGA, Fredslund F, Gilbert HJ, Goulding CW, Hartmann MD, Hayes CS, Herzberg O, Hill JC, Joachimiak A, Kohring G-W, Koning RI, {Lo Leggio} L, Mangiagalli M, Michalska K, Moult J, Najmudin S, Nardini M, Nardone V, Ndeh D, Nguyen TH, Pintacuda G, Postel S, van Raaij MJ, Roversi P, Shimon A, Singh AK, Sundberg EJ, Tars K, Zitzmann N, Schwede T.  2017.  Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016), oct. Proteins: Structure, Function, and Bioinformatics. AbstractWebsite

The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment. This article is protected by copyright. All rights reserved.

Coelho, {BJ}, Veigas B, Águas H, Fortunato E, Martins R, Baptista {PV}, Igreja R.  2017.  A digital microfluidics platform for loop-mediated isothermal amplification detection, nov. Sensors. 17, Number 11: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Digital microfluidics (DMF) arises as the next step in the fast-evolving field of operation platforms for molecular diagnostics. Moreover, isothermal schemes, such as loop-mediated isothermal amplification (LAMP), allow for further simplification of amplification protocols. Integrating DMF with LAMP will be at the core of a new generation of detection devices for effective molecular diagnostics at point-of-care (POC), providing simple, fast, and automated nucleic acid amplification with exceptional integration capabilities. Here, we demonstrate for the first time the role of coupling DMF and LAMP, in a dedicated device that allows straightforward mixing of LAMP reagents and target DNA, as well as optimum temperature control (reaction droplets undergo a temperature variation of just 0.3°C, for 65°C at the bottom plate). This device is produced using low-temperature and low-cost production processes, adaptable to disposable and flexible substrates. DMF-LAMP is performed with enhanced sensitivity without compromising reaction efficacy or losing reliability and efficiency, by LAMP-amplifying 0.5 ng/µL of target DNA in just 45 min. Moreover, on-chip LAMP was performed in 1.5 µL, a considerably lower volume than standard bench-top reactions.

Trindade, AC, Almeida APC, Canejo JP, Patrício P, Pieranski P, Godinho MH.  2017.  Elastomeric Patterns Probed by a Nematic Liquid Crystal, nov. Molecular Crystals and Liquid Crystals. 657:136-146., Number 1 Abstract
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Pires, VMR, Pereira PMM, Brás JLA, Correia M, Cardoso V, Bule P, Alves VD, Najmudin S, Venditto I, Ferreira LMA, Romão MJ, Carvalho AL, Fontes CMGA, Prazeres DM.  2017.  Stability and ligand promiscuity of type A carbohydrate-binding modules are illustrated by the structure of Spirochaeta thermophila StCBM64C, mar. Journal of Biological Chemistry. 292:4847–4860., Number 12 AbstractWebsite

Deconstruction of cellulose, the most abundant plant cell wall polysaccharide, requires the cooperative activity of a large repertoire of microbial enzymes. Modular cellulases contain non-catalytic type A Carbohydrate-Binding Modules (CBMs) that specifically bind to the crystalline regions of cellulose, thus promoting enzyme efficacy through proximity and targeting effects. Although type A CBMs play a critical role in cellulose recycling, their mechanism of action remains poorly understood. Here we produced a library of recombinant CBMs representative of the known diversity of type A modules. The binding properties of 40 CBMs, in fusion with an N-terminal green fluorescence protein (GFP) domain, revealed that type A CBMs possess the ability to recognize different crystalline forms of cellulose and chitin over a wide range of temperatures, pHs and ionic strengths. A Spirochaeta thermophila CBM64, in particular, displayed plasticity in its capacity to bind both crystalline and soluble carbohydrates under a wide range of extreme conditions. The structure of S. thermophila StCBM64C revealed an untwisted, flat, carbohydrate-binding interface comprising the side chains of four tryptophan residues in a coplanar linear arrangement. Significantly, two highly conserved asparagine side chains, each one located between two tryptophan residues, are critical to insoluble and soluble glucan recognition but not to bind xyloglucan. Thus, CBM64 compact structure and its extended and versatile ligand interacting platform illustrates how type A CBMs target their appended plant cell wall degrading enzymes to a diversity of recalcitrant carbohydrates under a wide range of environmental conditions.

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