Publications

Export 298 results:
Sort by: Author Title Type [ Year  (Desc)]
2008
Vidinha, P, Lourenco NMT, Pinheiro C, Bras AR, Carvalho T, Santos-Silva T, Mukhopadhyay A, Romao MJ, Parola J, Dionisio M, Cabral JMS, Afonso CAM, Barreiros S.  2008.  Ion jelly: a tailor-made conducting material for smart electrochemical devices, 2008. Chemical Communications. :5842-5844. Abstract

We present a new concept for the design of a polymeric conducting material that combines the chemical versatility of an organic salt ( ionic liquid) with the morphological versatility of a biopolymer ( gelatin); the resulting 'ion jelly' can be applied in electrochemical devices, such as batteries, fuel cells, electrochromic windows or photovoltaic cells.

Burguete, MI, Galindo F, Gavara R, Izquierdo MA, Lima JC, Luis SV, Parola AJ, Pina F.  2008.  Use of fluorescence spectroscopy to study polymeric materials with porous structure based on imprinting by self-assembled fibrillar networks, 2008. Langmuir. 24:9795-9803. Abstract

Different polymeric materials have been prepared from the oroartopels formed by a polymerizable methacrylic mixture (methyl i-nethacrylate/ethylene glycol dimethacrylate, 1: 1, w/w) and the macrocyclic pseudopeptide 1. The use of (2,4,6-trimethylbenzoyl)diphenylphosphine oxide as it very efficient radical initiator allows polymeric materials in which the structure of the fibrils formed by self-assembly of the organogelator 1 is truly preserved to be obtained. Removal of the pseudopeptidic molecule provides materials with a porous structure reflecting that of the original self-assembled fibrils. The use of fluorescent probes Such as rhodamine B and pyrene greatly facilitate the Study of the porous structures formed and, accordingly, that of the morphology of the original fibrils. Those studies reveal the presence of a permanent porosity and the organization of the Substructures as a porous network. This confirms the existence of a nucleation and growth mechanism for the generation of the fibrils, giving rise to the formation of spherulitic structures. Those spherulites are additionally linked by connections of variable size. A series of diffusion experiments allowed establishment of a direct dependence of the inner porosity of the materials oil the amount of self-organizing template used for their preparation.

Rodriguez, L, Lima JC, Parola JA, Pina F, Meitz R, Aucejo R, Garcia-Espana E, Llinares JM, Soriano C, Alarcon J.  2008.  Anion detection by fluorescent Zn(II) complexes of functionalized polyamine ligands. Inorganic Chemistry. 47:6173-6183., Number 14 Abstract
n/a
Portugal, CAM, Lima JC, Crespo JG.  2008.  Effect of physicochemical conditions on the ultrafiltration of beta-lactoglobulin: Fluorescence probing of induced structural changes. Journal of Membrane Science. 321:69-80., Number 1 Abstract
n/a
Sousa, MM, Melo MJ, Parola JA, Seixas de Melo SJ, Catarino F, Pina F, Cook FEM, Simmonds MSJ, Lopes JA.  2008.  Flavylium chromophores as species markers for dragon's blood resins from Dracaena and Daemonorops trees. Journal of Chromatography A. 1209:153-161., Number 1-2 Abstract
n/a
Bazzicalupi, C, Bencini A, Bianchi A, Danesi A, Faggi E, Giorgi C, Lodeiro C, Oliveira E, Pina F, Valtancoli B.  2008.  Interaction of polyamine macrocycles with Zn(II) and ATP in aqueous solution. Binary and ternary systems. A potentiometric, NMR and fluorescence emission study. Inorganica Chimica Acta. 361:3410-3419., Number 12-13 Abstract
n/a
Laia, CAT, Costa SMB.  2008.  Interaction of zinc tetrasulfonated phthalocyanine with cytochrome c in water and Triton-X 100 micelles. Journal of Physical Chemistry B. 112:4276-4282., Number 14 Abstract
n/a
Pinheiro, AV, Baptista P, Lima JC.  2008.  Light activation of transcription: photocaging of nucleotides for control over RNA polymerization. Nucleic Acids Research. 36, Number 14 Abstract
n/a
Giestas, L, Ferreira GNM, Baptista PV, Lima JC.  2008.  Multiplexed spectral coding for simultaneous detection of DNA hybridization reactions based on FRET. Sensors and Actuators B-Chemical. 134:146-157., Number 1 Abstract
n/a
Rodriguez, L, Lodeiro C, Lima JC, Crehuet R.  2008.  Neutral gold(I) metallosupramolecular compounds: Synthesis and characterization, photophysical properties, and density functional theory studies. Inorganic Chemistry. 47:4952-4962., Number 11 Abstract
n/a
Vidinha, P, Augusto V, Nunes J, Lima JC, Cabral JMS, Barreiros S.  2008.  Probing the microenvironment of sol-gel entrapped cutinase: The role of added zeolite NaY. Journal of Biotechnology. 135:181-189., Number 2 Abstract
n/a
Ferrer, M, Gutierrez A, Rodriguez L, Rossell O, Lima JC, Font-Bardia M, Solans X.  2008.  Study of the effect of the phosphane bridging chain nature on the structural and photophysical properties of a series of gold(I) ethynylpyridine complexes. European Journal of Inorganic Chemistry. :2899-2909., Number 18 Abstract
n/a
Barbazan, P, Carballo R, Covelo B, Lodeiro C, Lima JC, Vazquez-Lopez EM.  2008.  Synthesis, characterization, and photophysical properties of 2-hydroxybenzaldehyde [(1E)-1-pyridin-2-ylethylidene]hydrazone and its rhenium(I) complexes. European Journal of Inorganic Chemistry. :2713-2720., Number 17 Abstract
n/a
Nunez, C, Oliveira E, Giestas L, Valencia L, Macias A, Lima JC, Bastida R, Lodeiro C.  2008.  Synthesis, spectroscopic, structural and complexation studies of a new tetra-naphthylmethylene pendant-armed macrocyclic ligand. Inorganica Chimica Acta. 361:2183-2194., Number 8 Abstract
n/a
2007
Gomes, R, Parola AJ, Laia CAT, Pina F.  2007.  Efficient photochromism from the network of chemical reactions of 7,4 '-dihydroxyflavylium in CTAB micelles, 2007. Photochemical & Photobiological Sciences. 6:1003-1009. Abstract

Differently from water,effcient photochromism with a strong colour contrast has been observed for the multistate compound 7,4'- dihydroxyflavylium in the presence of cetyl trimethylammonium bromide ( CTAB) micelles. Two states are responsible for the photochromism: trans-chalcone ( inside the micelle) in the dark, and flavylium cation, AH(+), ( in bulk water) upon irradiation. The kinetics of the system was characterized by. ash photolysis and pH jumps. Evidence that the photochemical process leading to AH(+) occurs in the micelle was achieved. The best colour contrast is obtained at pH = 1.5, from a solution practically colourless in the dark, to an intense yellow upon irradiation ( quantum yield 0.4). The system is completely reversible with a lifetime of 38 min at room temperature, and exhibits a reasonable stability. A kinetic model capable of fitting the data from thermal entrance of the compound into the micelle, its ejection to bulk water upon irradiation and quantum yields of the photochemical process is proposed.

Laia, CAT, Parola AJ, Folgosa F, Pina F.  2007.  Multistate reaction kinetics of 6-hydroxy-4 '-(dimethylamino)flavylium driven by pH. A stopped-flow study, 2007. Organic & Biomolecular Chemistry. 5:69-77. Abstract

The synthetic flavylium salt 6-hydroxy-4'-(dimethylamino)flavylium hexa. uorophosphate displays a set of pH-driven chemical reactions in aqueous solutions, involving the formation of hemiketal species and chalcones with cis and trans configurations. Such reactions were studied by steady-state and transient UV-Vis spectroscopy and by stopped-flow techniques. A novel and more generalized kinetic scheme is developed, in order to take account of possible acid/base pairs that occur in the network of chemical reactions as the pH is changed. It is found that the formation of the hemiketal species by hydration of the. avylium is slow, and it is not possible to isolate each process that leads to the formation of the cis-chalcone ( hydration and tautomerization reactions). The cis/trans isomerization reaction of cis-chalcone is slow, and the system takes several hours to reach equilibrium after a pH jump at room temperature. In basic conditions, negatively charged trans-chalcones are dominant. Comparison with other. avylium compounds shows that the hydration process is affected mainly by the amino group, while the hydroxyl group influences the tautomerization and isomerization reactions.

Pina, F, Parola AJ, Melo MJ, Laia CAT, Afonso CAM.  2007.  Photochromism of 7-(N, N-diethylamino) 4 '-hydroxyflavylium in a water-ionic liquid biphasic system, 2007. Chemical Communications. :1608-1610. Abstract

Photochromism of trans-4-(N,N-diethylamino)-2,4'-dihydroxychalcone, with formation of the photoproduct 7-(N,N-diethylamino)-4'-hydroxyflavylium, is promoted in the ionic liquid phase of a water/[bmim][PF6] biphasic system.

Gomes, R, Parola AJ, Laia CAT, Pina F.  2007.  Promoting photochromism on flavylium derived 2-hydroxychalcones in aqueous solutions by addition of CTAB micelles, 2007. Journal of Physical Chemistry B. 111:12059-12065. Abstract

A strategy to obtain photochromism from the network of chemical reactions originated by flavyliurn compounds in solution is described. This strategy is particularly useful for flavyliurn salts bearing amino groups which give rise to a variety of beautiful colors but lack photochemistry in water. The trans-chalcone of 7-(N,Ndiethylamino)-4'-hydroxyflavylium interacts strongly with CTAB micelles defining a yellow dark state. Upon irradiation, the system switches to a pink-red state emerging from the flavylium cation that is formed inside the micelle and ejected to the bulk aqueous phase. The photochemical product reverts back to the transchalcone adduct with the micelle in the dark. The thermodynamics as well as the kinetics of the photochromic system were studied in detail. The best color contrast is obtained at pH = 4.25 with (D = 0.001 and a recovery lifetime of approximately 3 h. This photochromic system works with no need of changing the pH, which constitutes an important improvement over previously described systems dependent on pH jumps.

Roque, A, Lima JC, Parola AJ, Pina F.  2007.  Substitution and solvent effects in the chalcones isomerization barrier of flavylium photochromic systems, 2007. Photochemical & Photobiological Sciences. 6:381-385. Abstract

Useful application of photochromic compounds as optical memories implies the existence of a large kinetic barrier between the forms interconverted by light. In the case of flavylium salts, the ground state isomerization barrier between the photoisomerizable chalcone isomers is shown to correlate with the electron donating ability of the substituents, measured by their effects in the H-1 NMR chemical shifts of the aromatic protons. Substitution with electron donating groups in ring A lowers the barrier while substitution at ring B has the opposite effect. However, in water, the observed increase is higher than expected in the case of compound 4', 9-dihydroxychalcone when compared with the analogous 4'-dimethylamino-9-hydroxychalcone, containing a better electron donating group in the same position. Our interpretation is that the water network is providing an efficient pathway to form tautomers. In acetonitrile, unlike water, the expected order is indeed observed: E-a( 4', 9-dihydroxychalcone) = 60 kJ mol(-1) < E-a ( 4'-dimethylamino-9-hydroxychalcone) = 69 kJ mol(-1).

Parola, AJ, Lima JC, Pina F, Pina J, de Melo JS, Soriano C, Garcia-Espana E, Aucejo R, Alarcon J.  2007.  Synthesis and photophysical properties of dansyl-based polyamine ligands and their Zn(II) complexes, 2007. Inorganica Chimica Acta. 360:1200-1208. Abstract

The synthesis, potentiometric studies and photophysical properties of two new polyamine ligands (L1 and L2) possessing the dansyl chromophore were studied in aqueous 0.15 M NaCl. The compounds show the absorption and emissions bands characteristic of the dansylamide fluorophore and both present intramolecular excited state proton transfer at intermediate pH ranges. One of the ligands (L2) strongly coordinates Zn(II) leading to fluorescence quenching. A model compound (L3) of the dansyl moiety was also investigated. (c) 2006 Elsevier B.V. All rights reserved.

Afonso, CAM, Branco LC, Candeias NR, Gois PMP, Lourenco NMT, Mateus NMM, Rosa JN.  2007.  Efficient catalyst reuse by simple dissolution in non-conventional media. Chemical Communications. :2669-2679., Number 26 Abstract
n/a
Portugal, CAM, Crespo JG, Lima JC.  2007.  Monitoring the structural alterations induced in P-lactoglobulin during ultrafiltration: learning from chemical and thermal denaturation phenomena. Journal of Membrane Science. 300:211-223., Number 1-2 Abstract
n/a
Noronha, M, Lima JC, Paci E, Santos H, Macanita AL.  2007.  Tracking local conformational changes of ribonuclease A using picosecond time-resolved fluorescence of the six tyrosine residues. Biophysical Journal. 92:4401-4414., Number 12 Abstract
n/a
2006
Lodeiro, C, Lima JC, Parola AJ, de Melo JSS, Capelo JL, Covelo B, Tamayo A, Pedras B.  2006.  Intramolecular excimer formation and sensing behavior of new fluorimetric probes and their interactions with metal cations and barbituric acids, 2006. Sensors and Actuators B-Chemical. 115:276-286. Abstract

A new family of compounds able to promote host-guest interactions with specific molecules (e.g., cyanuric and parabanic acids) and to coordinate metal ions, namely Zn(II) and Cu(II), has been synthesized and fully characterized. The new probes derive from the attachment of two methylaminopyrene units to the carbonyl precursor 2,6-bis(2-formylphenoxymethyl)pyridine. Its signalling properties result from the fluorescence emission properties, which reveal the existence of intramolecular excimer formation. The compounds have showed to be highly sensitive to the solvent and hydrogen ion concentration of the medium. Depending on these, different monomer-to-excimer fluorescence ratio is displayed by the two probes. The compound with a single pyrene unit revealed absence of excimer formation and was used as model compound. The overall results are discussed on the basis of the studied probes as potentially revealing molecular movements, off-on-off fluorescent photoinduced electron transfer (PET), host-guest interactions with specific compounds and of sensing metal ions. (c) 2005 Elsevier B.V. All rights reserved.

Gomes, R, Parola AJ, Lima JC, Pina F.  2006.  Solvent effects on the thermal and photochemical reactions of 4 '-iodo-8-methoxyflavylium and their consequences on the coloring phenomena caused by anthocyanins in plants, 2006. Chemistry-a European Journal. 12:7906-7912. Abstract

The chemistry and photochemistry of the compound 4'-iodo-8-methoxyflavylium tetrafluoroborate was studied in solvent mixtures of water and ethanol. The trans-chalcone form (0) is always the most stable species at equilibrium. In particular, for the first time, Ct and not the flavylium cation is reported as the most stable species in mixtures containing water at pH 1.0. The rate of Ct formation as a function of the water content exhibits a bell-shaped dependence, showing a maximum at approximately 50% water. These trends are explained by a slower cis-trans isomerization in ethanol relative to that in water due to the expected stabilization in polar solvents of the zwitterionic intermediate; on the other hand, the decrease in the concentration of cis-chalcone (Cc) in the pseudoequilibrium with increasing water content, gives rise to a decrease in the rate of Ct formation (k(obs)=k(real)[Cc]). The hydration reaction was found to be much more efficient when water is present in low concentrations. This result has important consequences for the interpretation of the coloring phenomena caused by anthocyanins in plants, as well as for applications of flavylium compounds in the field of optical memories.