Publications

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2004
Pina, F, Lima JC, Parola AJ, Afonso CAM.  2004.  Thermal and photochemical properties of 4 ',7-dihydroxyflavylium in water-ionic liquid biphasic systems: A write-read-erase molecular switch, 2004. Angewandte Chemie-International Edition. 43:1525-1527. Abstract
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Laia, CAT, Costa SMB, Phillips D, Beeby A.  2004.  Electron-transfer kinetics in sulfonated aluminum phthalocyanines/cytochrome c complexes. Journal of Physical Chemistry B. 108:7506-7514., Number 22 Abstract
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Valente, AA, Petrovski Z, Branco LC, Afonso CAM, Pillinger M, Lopes AD, Romao CC, Nunes CD, Goncalves IS.  2004.  Epoxidation of cyclooctene catalyzed by dioxomolybdenum(VI) complexes in ionic liquids. Journal of Molecular Catalysis a-Chemical. 218:5-11., Number 1 Abstract
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da Silva, PF, Lima JC, Quina FH, Macanita AL.  2004.  Excited-state electron transfer in anthocyanins and related flavylium salts. Journal of Physical Chemistry a. 108:10133-10140., Number 46 Abstract
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Laia, CAT, Costa SMB.  2004.  Interactions of a sulfonated aluminum phthalocyanine and cytochrome c in micellar systems: Binding and electron-transfer kinetics. Journal of Physical Chemistry B. 108:17188-17197., Number 44 Abstract
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Noronha, M, Lima JC, Lamosa P, Santos H, Maycock C, Ventura R, Macanita AL.  2004.  Intramolecular fluorescence quenching of tyrosine by the peptide alpha-carbonyl group revisited. Journal of Physical Chemistry a. 108:2155-2166., Number 12 Abstract
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Moncada, MC, Fernandez D, Lima JC, Parola AJ, Lodeiro C, Folgosa F, Melo MJ, Pina F.  2004.  Multistate properties of 7-(N,N-diethylamino)-4 '-hydroxyflavylium. An example of an unidirectional reaction cycle driven by pH. Organic & Biomolecular Chemistry. 2:2802-2808., Number 19 Abstract
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Ferrer, M, Rodriguez L, Rossell O, Lima JC, Gomez-Sal P, Martin A.  2004.  Unexpected alkyne transfer between gold and rhenium atoms and its application to the synthesis of alkynyl rhenium(I) compounds. Organometallics. 23:5096-5099., Number 21 Abstract
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Noronha, M, Lima JC, Bastos M, Santos H, Macanita AL.  2004.  Unfolding of ubiquitin studied by picosecond time-resolved fluorescence of the tyrosine residue. Biophysical Journal. 87:2609-2620., Number 4 Abstract
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2003
Anda, C, Bazzicalupi C, Bencini A, Bianchi A, Fornasari P, Giorgi C, Valtancoli B, Lodeiro C, Parola AJ, Pina F.  2003.  Cu(II) and Ni(II) complexes with dipyridine-containing macrocyclic polyamines with different binding units, 2003. Dalton Transactions. :1299-1307. Abstract

The coordination features of the two dipyridine-containing polyamine macrocycles 2,5,8,11,14-pentaaza[ 15][ [15](2,2')[1,15]-bipyridylophane (L1) and 4,4'-(2,5,8,11,14-pentaaza[15]-[15](2,2')-bipyridylophane) (L2) toward Cu(II) and Ni(II) have been studied by means of potentiometric and spectrophotometric UV-vis titrations in aqueous solutions. While in L1 all the nitrogen donor atoms are convergent inside the macrocyclic cavity, in L2 the heteroaromatic nitrogen atoms are located outside. Ligands L1 and L2 form stable mono- and dinuclear complexes with Cu(II). In the case of Ni(II) coordination, only L1 gives dinuclear complexes, while L2 can form only mononuclear species. In the Cu(II) or Ni(II) complexes with L1 the metal(s) are lodged inside the macrocyclic cavity, coordinated to the heteroaromatic nitrogens. As shown by the crystal structure of the [CuL1](2+) and [NiL1](2+) cations, at least one of the two benzylic nitrogens is not coordinated and facile protonation of the complex takes place at neutral or slightly acidic pH values. The particular molecular architecture of L2, which displays two well-separated binding moieties, strongly affects its coordination behavior. In the mononuclear [ CuL2](2+) complex, the metal is encapsulated inside the cavity, not coordinated by the dipyridine unit. Protonation of the complex, however, occurs on the aliphatic polyamine chain and gives rise to translocation of the metal outside the cavity, bound to the heteroaromatic nitrogens. In the [NiL2](2+) complex the metal is coordinated by the dipyridine nitrogens, outside the macrocyclic cavity. Thermodynamic and/or kinetic considerations may explain the different behavior with respect to the corresponding Cu(II) complex.

de Melo, JS, Pina J, Pina F, Lodeiro C, Parola AJ, Lima JC, Albelda MT, Clares MP, Garcia-Espana E, Soriano C.  2003.  Energetics and dynamics of naphthalene polyaminic derivatives. Influence of structural design in the balance static vs dynamic excimer formation, 2003. Journal of Physical Chemistry A. 107:11307-11318. Abstract

Two new fluorescent macrocyclic structures bearing two naphthalene (Np) units at both ends of a cyclic polyaminic chain were investigated with potentiometric, fluorescence (steady-state and time-resolved) and laser flash photolysis techniques. The fluorescence emission studies show the presence of an excimer species whose formation depends on the protonation state of the polyamine chains implying the existence of a bending movement (occurring in both the ground and in the first singlet excited state), which allows the two naphthalene units to approach and interact. For comparison purposes, one bis-chromophoric compound containing a rigid chain (piperazine unit) was also investigated. Its emission spectra shows a unique band decaying single exponentially thus showing that no excimer is formed. With the two new ligands, excimer formation occurs in all situations even at very acidic pH values when the protonation of the polyamine bridges is extensive. Coexistence of ground-state dimers with dynamic excimers was established based on steady-state and time-resolved fluorescence data. The energetics of excimer formation and dissociation were determined in ethanol and water. Different methods of decay analysis (independent decay deconvolution, global analysis and excimer deconvolution with monomer) were used to extract the kinetic (rate constants for excimer formation, dissociation, and decay) and thermodynamic parameters. In ethanol and acidified ethanol:water mixtures, an additional short decay time was found to exist and assigned to a dimer, whose presence is assumed to be responsible by the decrease in activation energy for excimer formation in this solvent. The results are globally discussed in terms of the small architectural differences that can induce significant changes in the photophysical behavior of the three studied compounds.

Albelda, MT, Garcia-Espana E, Gil L, Lima JC, Lodeiro C, de Melo JS, Melo MJ, Parola AJ, Pina F, Soriano C.  2003.  Intramolecular excimer formation in a tripodal polyamine receptor containing three naphthalene fluorophores, 2003. Journal of Physical Chemistry B. 107:6573-6578. Abstract

comprehensive investigation on the energetics and dynamics of a new fluorescent sensor constituted by a tripodal polyamine receptor containing three naphthalene fluorophores, compound L, is reported. The influence of external factors such as the solvent, hydrogen ion concentration, and temperature in the photophysics of the sensor is discussed. The temperature dependence of monomer/excimer interconversion of L revealed an average percentage relative sensitivity of 4.5%/degreesC thus portending its use as a temperature sensor. The activation energy for excimer formation (E-1 = 12 kJ mol(-1)) and dissociation (E-1 = 57 kJ mol(-1)), entropy change (DeltaS = -128 J K-1 mol(-1)), and the binding energy of the excimer (DeltaH = 45 kJ mol(-1)) were obtained in water at acidic pH values and ethanol (E-1 = 15 kJ mol(-1), E-1 = 40 kJ mol(-1), DeltaS = -61 J K-1 mol(-1), and DeltaH = 25 kJ mol(-1)). The dependence of the kinetic and thermodynamic parameters on the dielectric constant of the medium and on the degree of protonation of the polyamine chain was interpreted in terms of the excimer destabilization provoked by the electrostatic repulsion between the positively charged chains.

Vicente, M, Bastida R, Lodeiro C, Macias A, Parola AJ, Valencia L, Spey SE.  2003.  Metal complexes with a new N4O3 amine pendant-armed macrocyclic ligand: Synthesis, characterization, crystal structures, and fluorescence studies, 2003. Inorganic Chemistry. 42:6768-6779. Abstract

The synthesis of a new oxaaza macrocyclic ligand, L, derived from O-1,O-7-bis(2-formylphenyl)-1,4,7-trioxaheptane and tren containing an amine terminal pendant arm, and its metal complexation with alkaline earth (M = Ca2+, Sr2+, Ba2+), transition (M = Co2+, Ni2+, Cu2+, Zn2+, Cd2+), post-transition (M = Pb2+), and Y3+ and lanthanide (M = La3+, Er3+) metal ions are reported. Crystal structures of [H2L](ClO4)(2).3H(2)O, [PbL](ClO4)(2), and [ZnLCl](ClO4).H2O are also reported. In the [PbL] complex, the metal ion is located inside the macrocyclic cavity coordinated by all N4O3 donor atoms while, in the [ZnLCI] complex, the metal ion is encapsulated only by the nitrogen atoms present in the ligand. pi-pi interactions in the [H2L](ClO4)(2).3H(2)O and [PbL](ClO4)(2) structures are observed. Protonation and Zn2+, Cd2+, and Cu2+ complexation were studied by means of potentiometric, UV-vis, and fluorescent emission measurements. The 10-fold fluorescence emission increase observed in the pH range 7-9 in the presence of Zn2+ leads to L as a good sensor for this biological metal in water solution.

Rodriguez, L, Alves S, Lima JC, Parola AJ, Pina F, Soriano C, Albelda T, Garcia-Espana E.  2003.  Supramolecular interactions of hexacyanocobaltate(III) with polyamine receptors containing a terminal anthracene sensor, 2003. Journal of Photochemistry and Photobiology a-Chemistry. 159:253-258. Abstract

The fluorescence emission properties of a series of chemosensors containing a polyamine receptor bearing an anthracene signaling unit were studied. The fluorescence emission intensity is dependent on the protonation degree of the receptor, the fully protonated form exhibiting the highest emission intensity. By removing protons from the nitrogens a quenching effect can be observed, due to an electron-transfer from the amine to the excited fluorophore. The rate constant of the quenching process is exponentially dependent on the distance of the nitrogen from which the electron is transferred (beta = 0.6Angstrom(-1)). The ability of the chemosensors for signaling anions was tested through the model anion hexacyanocobaltate(III). The temperature dependence of the association constants shows that at least for this compound, the change in solvation entropy is probably the controlling parameter to account for the binding. (C) 2003 Elsevier Science B.V. All rights reserved.

Paulo, PMR, Laia CAT, Costa SMB.  2003.  Clusters in polymer-surfactant AOT microemulsions probed by excited state quenching kinetics. Journal of Physical Chemistry B. 107:1097-1105., Number 4 Abstract
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Moncada, MC, Moura S, Melo MJ, Roque A, Lodeiro C, Pina F.  2003.  Complexation of aluminum(III) by anthocyanins and synthetic flavylium salts - A source for blue and purple color. Inorganica Chimica Acta. 356:51-61. Abstract
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Giestas, L, Yihwa C, Lima JC, Vautier-Giongo C, Lopes A, Macanita AL, Quina FH.  2003.  The dynamics of ultrafast excited state proton transfer in anionic micelles. Journal of Physical Chemistry a. 107:3263-3269., Number 18 Abstract
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Moreira, PF, Giestas L, Yihwa C, Vautier-Giongo C, Quina FH, Macanita AL, Lima JC.  2003.  Ground- and excited-state proton transfer in anthocyanins: From weak acids to superphotoacids. Journal of Physical Chemistry a. 107:4203-4210., Number 21 Abstract
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Ferrer, M, Rodriguez L, Rossell O, Pina F, Lima JC, Bardia MF, Solans X.  2003.  Linear ditopic acetylide gold or mercury complexes: synthesis and photophysic studies X-ray crystal structure of PPh4[Au(C CC5H4N)(2)]. Journal of Organometallic Chemistry. 678:82-89., Number 1-2 Abstract
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Roque, A, Lodeiro C, Pina F, Maestri M, Dumas S, Passaniti P, Balzani V.  2003.  Multistate/multifunctional systems. A thermodynamic, kinetic, and photochemical investigation of the 4 '-dimethylaminoflavylium compound. Journal of the American Chemical Society. 125:987-994., Number 4 Abstract
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Albelda, MT, Aguilar J, Alves S, Aucejo R, Diaz P, Lodeiro C, Lima JC, Garcia-Espana E, Pina F, Soriano C.  2003.  Potentiometric, NMR, and fluorescence-emission studies on the binding of adenosine 5 '-triphosphate (ATP) by open-chain polyamine receptors containing naphthylmethyl and/or anthrylmethyl groups. Helvetica Chimica Acta. 86:3118-3135., Number 9 Abstract
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Laia, CAT, Costa SMB, Phillips D, Parker AW.  2003.  Spectroscopy of photoinduced charge-transfer reactions between tetrasulfonated aluminium phthalocyanine and methyl viologen. Photochemical & Photobiological Sciences. 2:555-562., Number 5 Abstract
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Mateus, NMM, Branco LC, Lourenco NMT, Afonso CAM.  2003.  Synthesis and properties of tetra-alkyl-dimethylguanidinium salts as a potential new generation of ionic liquids. Green Chemistry. 5:347-352., Number 3 Abstract
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2002
Arranz, P, Albelda MT, Garcia-Espana E, Lima JC, Lodeiro C, de Melo JS, Parola AJ, Pina F.  2002.  Energy transfer between polyamine chains bearing naphthalene terminal units and K-3 Co(CN)(6) : an example of a molecular photoreactor, 2002. Journal of the Chemical Society-Dalton Transactions. :3024-3028. Abstract

Molecular photoreactors consisting of polyamine chains (receptors) bearing terminal naphthalene units (antennae) are described. The receptors are used to bind the substrate hexacyanocobaltate(III) and the antennae to transfer energy to the complex and thus promote a photoaquation reaction.