Publications

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2012
Pina, F, Melo MJ, Laia CAT, Parola JA, Lima JC.  2012.  Chemistry and applications of flavylium compounds: a handful of colours. Chemical Society Reviews. 41:869-908., Number 2 Abstract
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Miguel, C, Lopes JA, Clarke M, Melo MJ.  2012.  Combining infrared spectroscopy with chemometric analysis for the characterization of proteinaceous binders in medieval paints. Chemometrics and Intelligent Laboratory Systems. 119:32-38. Abstract
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Rodriguez, L, Ferrer M, Crehuet R, Anglada J, Lima JC.  2012.  Correlation between Photophysical Parameters and Gold-Gold Distances in Gold(I) (4-Pyridyl)ethynyl Complexes. Inorganic Chemistry. 51:7636-7641., Number 14 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Electrochromic Properties of Inkjet Printed Vanadium Oxide Gel on Flexible Polyethylene Terephthalate/Indium Tin Oxide Electrodes. Acs Applied Materials & Interfaces. 4:5266-5275., Number 10 Abstract
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Rosa, J, Conde J, de la Fuente JM, Lima JC, Baptista PV.  2012.  Gold-nanobeacons for real-time monitoring of RNA synthesis. Biosensors & Bioelectronics. 36:161-167., Number 1 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Inkjet Printing of Sol-Gel Synthesized Hydrated Tungsten Oxide Nanoparticles for Flexible Electrochromic Devices. Acs Applied Materials & Interfaces. 4:1330-1340., Number 3 Abstract
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Conde, J, Rosa J, Lima JC, Baptista PV.  2012.  Nanophotonics for Molecular Diagnostics and Therapy Applications. International Journal of Photoenergy. Abstract
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Oliveira, E, Luis Capelo J, Lima JC, Lodeiro C.  2012.  Novel emissive bio-inspired non-proteinogenic coumarin-alanine amino acid: fluorescent probe for polyfunctional systems. Amino Acids. 43:1779-1790., Number 4 Abstract
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Roldao, A, Mellado MCM, Lima JC, Carrondo MJT, Alves PM, Oliveira R.  2012.  On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP. Plos Computational Biology. 8, Number 2 Abstract
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Velasco, LF, Fonseca IM, Parra JB, Lima JC, Ania CO.  2012.  Photochemical behaviour of activated carbons under UV irradiation. Carbon. 50:249-258., Number 1 Abstract
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Gavara, R, Leydet Y, Petrov V, Pina F.  2012.  Photochemistry of 2-(4-hydroxystyryl)-1-naphthopyrylium. Photochemical & Photobiological Sciences. 11:1691-1699., Number 11 Abstract
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Pina, F, Petrov V, Laia CAT.  2012.  Photochromism of flavylium systems. An overview of a versatile multistate system. Dyes and Pigments. 92:877-889., Number 2 Abstract
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2011
Avo, J, Parola AJ, Lima JC, Pina F, Cunha-Silva L.  2011.  Phase transition thermochromism based on C-H acidity of 4-alkylflavylium compounds in Pluronic F-127, 2011. Journal of Materials Chemistry. 21:16628-16637. Abstract

In moderately acidic water/ethanol solutions, 7-(naphthalen-2-ylmethyl)-5,6-dihydrobenzo[c]xanthen12-ium perchlorate shows C-H proton acidity giving rise to an ethylenic base species, instead of the hydration products of the typical flavylium network of chemical reactions, hemiketal, cis-chalcone and trans-chalcone. The kinetics of this acid-base process is much slower, k(obs)(s(-1)) = 3.5 x 10(-3) + 0.16[H(+)], than those commonly observed for O-H deprotonation. In the presence of the triblock copolymer Pluronic F-127, the ethylenic base is dramatically stabilized shifting the pK(a) from 1.35 (in ethanol : water (1 : 1) to -0.35. Taking profit from the well-described temperature dependence of this polymer, a phase transition thermochromic system was achieved. The system was cycled between 5 and 35 degrees C with negligible changes in absorbance after 20 cycles.

Leydet, Y, Gavara R, Cunha-Silva L, Parola AJ, Pina F.  2011.  Phase-Dependent Photochromism of a Lactone-Stabilized Chromene from a Flavylium Reaction Network, 2011. Chemistry-a European Journal. 17:3663-3671. Abstract

New trans-2-hydroxychalcones bearing a carboxylate group at position 2' (Ct(-)) were synthesized (compounds 2 and 3). These compounds lead to a network of chemical reactions depending on pH value, light, and solvent. In water, when the pH value is lowered, the ionized trans-chalcone is protonated and the flavylium cation AH(+) is formed at very acidic pH values through hemiketal B and cis-chalcone Cc, with global acidity constants of pK'(a) <= -1 and approximate to 0.1, respectively, for 2 and 3. The electron-acceptor character of the carboxylic substituent not only increases the observed acidity of the flavylium cation, but also decreases the rate of the ring-opening/closing from a subsecond timescale to hours relative to model compound 1 (without carboxylate). The photochemistry of the network was studied in detail by means of continuous irradiation, monitored by UV/Vis absorption and H-1 and C-13 NMR spectroscopic analysis. Although compound 3 is only slightly photoactive, compound 2 (Ct(-)) reacts in aqueous solutions (lambda(irr) = 313 nm) to form B- and Cc(-), with a global quantum yield of 0.15, and fully reverts back to Ct(-) with a rate constant of k = 6.7 x 10(-5) s(-1). The flavylium cation is no longer formed in methanol, and irradiation of Ct(-) leads to the formation of B- and the new lactone-trapped chromene species La. The formation of La takes place through a sequence of three photochemical steps: photoisomerization of Ct(-), photo-ring-closing reaction of Cc , and photolactonization of B-. Only the cis/trans isomerization and ring-closing reactions are thermally reversible on a timescale of seconds and hours, respectively. A photochromic system was achieved in rigid matrices of methanol (at 77 K) and 1-dodecanol (5 degrees C) by irradiating lactone La to give a red ortho-quinone allide through a photo-ring-opening reaction; the color disappears with a rate constant of k = 1.25 x 10(-2) s(-1) in 1-dodecanol at 5 degrees C.

Lima, JC, Rodriguez L.  2011.  Applications of gold(I) alkynyl systems: a growing field to explore. Chemical Society Reviews. 40:5442-5456., Number 11 Abstract
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Seixas de Melo, SJ, Cabral C, Lima JC, Macanita AL.  2011.  Characterization of the Singlet and Triplet Excited States of 3-Chloro-4-methylumbelliferone. Journal of Physical Chemistry a. 115:8392-8398., Number 30 Abstract
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Gordo, J, Avo J, Parola JA, Lima JC, Pereira A, Branco PS.  2011.  Convenient Synthesis of 3-Vinyl and 3-Styryl Coumarins. Organic Letters. 13:5112-5115., Number 19 Abstract
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Giestas, L, Lima JC, Baptista PV.  2011.  Coupling single base extension to a spectral codification tool for increased throughput screening. Journal of Biotechnology. 154:199-204., Number 4 Abstract
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Gomes, AC, Bruno SM, Gago S, Lopes RP, Machado DA, Carminatti AP, Valente AA, Pillinger M, Goncalves IS.  2011.  Epoxidation of cyclooctene using soluble or MCM-41-supported molybdenum tetracarbonyl-pyridylimine complexes as catalyst precursors. Journal of Organometallic Chemistry. 696:3543-3550., Number 22 Abstract
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Rosa, JP, Lima JC, Baptista PV.  2011.  Experimental photophysical characterization of fluorophores in the vicinity of gold nanoparticles. Nanotechnology. 22, Number 41 Abstract
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Lima, JC, Rodriguez L.  2011.  Phosphine-Gold(I) Compounds as Anticancer Agents: General Description and Mechanisms of Action. Anti-Cancer Agents in Medicinal Chemistry. 11:921-928., Number 10 Abstract
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Gavara, R, Petrov V, Lopez V, Pina F.  2011.  Photochromism of naphthoflavylium. On the role of 4-OH hemiketal in flavylium network. Journal of Photochemistry and Photobiology a-Chemistry. 220:4-10., Number 1 Abstract
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Rodriguez, L, Lima JC, Pina F, Cacciapaglia R, Di Stefano S, Ruggi A.  2011.  Photophysical Study of Naphthalenophanes: Evidence of Adduct Formation with Molecular Oxygen. Journal of Physical Chemistry a. 115:123-127., Number 2 Abstract
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Neves, P, Gago S, Balula SS, Lopes AD, Valente AA, Cunha-Silva L, Almeida Paz FA, Pillinger M, Rocha J, Silva CM, Goncalves IS.  2011.  Synthesis and Catalytic Properties of Molybdenum(VI) Complexes with Tris(3,5-dimethyl-1-pyrazolyl)methane. Inorganic Chemistry. 50:3490-3500., Number 8 Abstract
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2010
Gavara, R, Laia CAT, Parola AJ, Pina F.  2010.  Formation of a leuco Spirolactone from 4-(2-Carboxyphenyl)-7-diethylamino-4 '-dimethylamino-1-benzopyrylium: Design of a Phase-Change Thermochromic System Based on a Flavylium Dye, 2010. Chemistry-a European Journal. 16:7760-7766. Abstract

A phase-change thermochromic system was designed through the reversible transformation of the 4-substituted flavylium dye 4-(2-carboxyphenyl)-7-diethylamino-4'-dimethyl-amino-1-benzopyrylium into its leuco form, in the presence of a developer (ethyldiisopropylamine) and a suitable solvent (e.g., acetonitrile, n-pentadecanonitrile). The leuco form of the flavylium-based dye is a spirolactone species whose ring opens at low temperature (below the solvent melting point) to form the blue flavylium cation. Decarboxylation of the lactone to give 4-phenyl-7-diethylamino-4'-dimethylamino-1-benzopyrylium was observed upon irradiation of the system with UV light, erasing the thermochromic effect.