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2017
Simoes, S, Nijs W, Ruiz P, Sgobbi A, Thiel C.  2017.  Comparing policy routes for low-carbon power technology deployment in EU – an energy system analysis. Energy Policy. 101:353–365.
Machado, MA, Rosado L, Pedrosa N, Miranda RM, Piedade M, Santos TG.  2017.  Customized Eddy Current Probes for Pipe Inspection. Studies in Applied Electromagnetics and Mechanics. :283-290.: IOS Press Ebooks Abstract

A novel Eddy Current (EC) probe configurations were developed to detect millimeter defects with any orientation on inner or outer pipe surfaces. The probes were designed and experimentally validated in different materials where the defects tested were identified with a high sensitivity and good signal-to-noise ratio.

Gouveia, JP, Seixas J, Mestre A.  2017.  Daily Electricity Profiles from Smart Meters - Proxies of Active Behaviour for Space Heating and Cooling. Energy. 141:108-122. AbstractWebsite

Daily electricity consumption profiles from smart meters are explored as proxies of active behavior regarding space heating and cooling. The influence of the environment air temperature (multiple maximum and minimum daily thresholds) on electricity consumption was explored for a final sample of 19 households located in southwestern Europe (characterized by hot, dry summers and cool, wet winters), taking the full year of 2014. Statistical analysis of the deviations from hourly average electricity consumptions for each temperature thresholds was performed for each household. Firstly, these deviations could act as proxies highlighting possible lack of thermal comfort on space cooling, and partially on space heating, supported by door-to-door survey data, on socio-economic details of occupants, buildings bearing structure and equipment's ownership and use. Secondly, meaningful differences of consumers' behavior on electricity consumption pattern were identified as a response for space heating and cooling to the environment air temperatures thresholds. Additionally, statistical clusters of active and non-active behavior groups of households were assessed, showing the electricity use for space heating. This paper illustrates the importance of the widespread use of smart-meters data on the increasingly electrified buildings sector, to understand whether and how thermal comfort could be achieved through active climatization behavior of its occupants. This is particularly important in regions where automatic HVAC systems are almost absent.

Gregório, V, Seixas J.  2017.  Energy Savings Potential in Urban Rehabilitation: A Spatial-Based Methodology Applied to Historic Centres. Energy and Buildings. 152:11-23.
Sebastian, R, Simoes SG.  2017.  Evaluating and mapping the energy efficiency potential in the Building sector of the Almada Municipality. Annual APEEN Conference. , Lisbon, Portugal. 9 May. http://www.apeen.org/en/conferencia-anual-apeen-2017/: ISCTE
Soares, PIP, Echeverria C, Baptista AC, João C, Fernandes S, Almeida A, Silva JC, Godinho MH, Borges JP.  2017.  Hybrid polysaccharide-based systems for biomedical applications. Hybrid Polymer Composite Materials: Applications. (Manju Kumari Thakur, Thakur, Vijay Kumar, Asokan Pappu, Eds.).:107-149., USA: Woodhead Publishing, Elsevier Abstract

Hybrid materials have been widely studied for structural applications. Polysaccharide-based fibers, especially cellulosic fibers, have been explored in the last two decades as substitutes of the traditional reinforcements made of glass or carbon fibers due to their mechanical properties. However, their biocompatibility, biodegradability, and chemistry have attracted the researchers and new developments in the field of smart and functional materials arise in diverse applications. This chapter will focus on the biomedical applications of polysaccharide-based smart and functional materials, namely those concerning biosensors and actuators, theranostic systems, and tissue-engineering applications. Special attention will be given to cellulose- and chitin/chitosan-based hybrid materials because these are the two most abundant polysaccharides and probably the most promising for the development of hybrid materials for biomedical applications. Biomimetic strategies for the development of smart and functional hybrid materials will also be highlighted.

Simões, S, Zeyringer M, Mayr D, Schmidt J.  2017.  Impact of modelling geographical disaggregation of wind and PV electricity generation in large energy system models: a case study for Austria. Renewable Energy Journal. 105:183-198.
Gargiulo, M, Chiodi A, De Miglio R, Simoes S, Long G, Pollard M, Gouveia JP, Giannakidis G.  2017.  An Integrated Planning Framework for the Development of Sustainable and Resilient Cities - The Case of the InSMART Project. Procedia Engineering. 198:444-453.
Costa, E, Seixas J, Costa G, Turrentine T.  2017.  Interplay between ethanol and electric vehicles as low carbon mobility options for passengers in the municipality of São Paulo. JOURNAL OF SUSTAINABLE TRANSPORTATION. 7(11):518-525.
Bonnet, A, Grosso AR, Elkaoutari A, Coleno E, Presle A, Sridhara SC, Janbon G, Geli V, de Almeida SF, Palancade B.  2017.  Introns Protect Eukaryotic Genomes from Transcription-Associated Genetic Instability. Molecular Cell. :1–14. AbstractWebsite

Transcription is a source of genetic instability that can notably result from the formation of genotoxic DNA:RNA hybrids, or R-loops, between the nascent mRNA and its template. Here we report an unexpected function for introns in counteracting R-loop accumulation in eukaryotic genomes. Deletion of endogenous introns increases R-loop formation, while insertion of an intron into an intronless gene suppresses R-loop accumulation and its deleterious impact on transcription and recombination in yeast. Recruitment of the spliceosome onto the mRNA, but not splicing per se, is shown to be critical to attenuate R-loop formation and transcription-associated genetic instability. Genome-wide analyses in a number of distant species differing in their intron content, including human, further revealed that intron-containing genes and the intron-richest genomes are best protected against R-loop accumulation and subsequent genetic instability. Our results thereby provide a possible rationale for the conservation of introns throughout the eukaryotic lineage.

Dias, L, Simões S, Gouveia JP, Seixas J.  2017.  Local Sustainable energy systems - the role of Times model. ETSAP Workshop on Sustainability Performance of the Energy Systems. , Madrid, Spain, 29th and 30th of May: CIEMAT
Gouveia, JP, Palma P, Seixas J, Simoes S.  2017.  Mapping Residential Thermal Comfort Gap at very high resolution spatial scale: Implications for Energy Policy Design. 40th International Association of Energy Economics International Conference, Meeting the Energy Demand of Emerging Economies. Implications for Energy and Environmental Markets. , Singapore, 18-21 June
Chávez-Rodriguéz, M, Dias L, Simoes S, Seixas J, Hawkes A, Szklo A, Lucena A.  2017.  Modelling the role of natural gas in the Southern Cone of Latin America. Applied Energy. 201(1):219-239.
Maia, LB, Moura I, Moura JJG.  2017.  Molybdenum and tungsten-containing enzymes: an overview. Molybdenum and Tungsten Enzymes: Biochemistry, RSC Metallobiology Series No. 5 (ISBN: 978-1-78262-089-1). . (Hille, R., Schulzke, C., Kirk, M.L., Eds.).:1-80.: Royal Society of Chemistrymo_w_enzymes-rsc_book_biochemistry-chap_1.pdf
Ferreira, J, Santos T, Pereira P, Corvo MC, Queiroz JA, Sousa F, Cruz C.  2017.  Naphthalene amine support for G-quadruplex isolation. Analyst. 142(16):2982-2994.: Royal Society of Chemistry AbstractWebsite

G-quadruplex (G4) is involved in many biological processes, such as telomere function, gene expression and DNA replication. The selective isolation of G4 using affinity ligands that bind tightly and selectively is a valuable strategy for discovering new G4 binders for the separation of G4 from duplexes or the discrimination of G4 structures. In this work, one affinity chromatographic support was prepared using a naphthalene amine as a G4 binder. The ligand was immobilized on epoxy-activated Sepharose CL-6B using a long spacer arm and was characterized by HR-MAS spectroscopy. The supercoiled (sc) isoform of pVAX1-LacZ and pVAX1-G4 was isolated from a native sample. Also, the recovery and isolation of the plasmid isoforms from Escherichia coli lysate samples were achieved using an ionic gradient with different concentrations of NaCl in 10 mM Tris-HCl (pH 7.4). The retention times of different DNA/single strand sequences that can form G4, such as, c-MYC, c-kit1, c-kit2, tetrameric, telomeric (23AG), thrombin aptamer (TBA) and 58Sγ3 in this support were evaluated. Our experimental results suggest that the support exhibits selectivity for parallel c-MYC and c-kit1 G4s. In vitro transcription was performed using purified sc pVAX1-G4 and pPH600 to induce G4 formation and circular dichroism (CD) analysis confirmed that both transcripts adopt a parallel G4 topology.

Dantas, JM, Brausemann A, Einsle O, Salgueiro CA.  2017.  NMR studies of the interaction between inner membrane-associated and periplasmic cytochromes from Geobacter sulfurreducens. FEBS Letters. 591:1657–1666. AbstractWebsite

Geobacter sulfurreducens is a dissimilatory metal reducing bacterium with notable properties and significance in biotechnological applications. Biochemical studies suggest that the inner membrane-associated diheme cytochrome MacA and the periplasmic triheme cytochrome PpcA from G. sulfurreducens can exchange electrons. In this work, NMR chemical shift perturbation measurements were used to map the interface region and to measure the binding affinity between PpcA and MacA. The results show that MacA binds to PpcA in a cleft defined by hemes I and IV, favoring the contact between PpcA heme IV and the MacA high potential heme. The dissociation constant values indicate the formation of a low affinity complex between the proteins, which is consistent with the transient interaction observed in electron transfer complexes.This article is protected by copyright. All rights reserved.

Machado, MA, Rosado L, Pedrosa N, Vostner A, Miranda RM, Piedade M, Santos TG.  2017.  Novel eddy current probes for pipes: Application in austenitic round-in-square profiles of ITER. NDT&E International. 87:111-118. AbstractWebsite

Novel eddy current probes were developed to detect sub-millimetre defects with any orientation on the inner surface of pipes. Five different probes were designed, produced and experimentally validated. These probes include arrays of planar trapezoidal coils in a flexible substrate used alone or together with different winded drive coils. Numerical simulations with Finite Element Method were used to predict the probe response to defects with any orientation. Experimental results in austenitic steel jackets used in ITER revealed that the new probes have an improved reliability compared to conventional toroidal bobbin probes, allowing a higher sensitivity to circumferential defects.

Mancio-Silva, L, Slavic K, Ruivo MGT, Grosso AR, Modrzynska KK, Vera IM, Sales-dias J, Gomes AR, Macpherson CR, Crozet P, Adamo M, Baena-gonzalez E, Tewari R, Llinás M, Billker O, Mota MM.  2017.  Nutrient sensing modulates malaria parasite virulence. Nature. : Nature Publishing Group AbstractWebsite

The lifestyle of intracellular pathogens, such as malaria parasites, is intimately connected to that of their host, primarily for nutrient supply. Nutrients act not only as primary sources of energy but also as regulators of gene expression, metabolism and growth, through various signalling networks that enable cells to sense and adapt to varying environmental conditions. Canonical nutrient-sensing pathways are presumed to be absent from the causative agent of malaria, Plasmodium, thus raising the question of whether these parasites can sense and cope with fluctuations in host nutrient levels. Here we show that Plasmodium blood-stage parasites actively respond to host dietary calorie alterations through rearrangement of their transcriptome accompanied by substantial adjustment of their multiplication rate. A kinome analysis combined with chemical and genetic approaches identified KIN as a critical regulator that mediates sensing of nutrients and controls a transcriptional response to the host nutritional status. KIN shares homology with SNF1/AMPKα, and yeast complementation studies suggest that it is part of a functionally conserved cellular energy-sensing pathway. Overall, these findings reveal a key parasite nutrient-sensing mechanism that is critical for modulating parasite replication and virulence.

Mano, F, Martins M, Sá-Nogueira I, Barreiros S, Borges JP, Reis R, Duarte AR, Paiva A.  2017.  Production of Electrospun Fast-Dissolving Drug Delivery Systems with Therapeutic Eutectic Systems Encapsulated in Gelatin. AAPS PharmSciTech. 18(7):2579-2585. AbstractWebsite

Fast-dissolving delivery systems (FDDS) have received increasing attention in the last years. Oral drug delivery is still the preferred route for the administration of pharmaceutical ingredients. Nevertheless, some patients, e.g. children or elderly people, have difficulties in swallowing solid tablets. In this work, gelatin membranes were produced by electrospinning, containing an encapsulated therapeutic deep-eutectic solvent (THEDES) composed by choline chloride/mandelic acid, in a 1:2 molar ratio. A gelatin solution (30% w/v) with 2% (v/v) of THEDES was used to produce electrospun fibers and the experimental parameters were optimized. Due to the high surface area of polymer fibers, this type of construct has wide applicability. With no cytotoxicity effect, and showing a fast-dissolving release profile in PBS, the gelatin fibers with encapsulated THEDES seem to have promising applications in the development of new drug delivery systems.

Zajac, M, Kahl H, Schade B, Dionísio M, Beiner M.  2017.  Relaxation behavior of polyurethane networks with different composition and crosslinking density. Polymer. 111:83-90.Website
dos Santos, R, Carvalho AL, Roque ACA.  2017.  Renaissance of protein crystallization and precipitation in biopharmaceuticals purification. Biotechnology Advances. 35:–., Number 1: Elsevier Inc. AbstractWebsite

The current chromatographic approaches used in protein purification are not keeping pace with the increasing biopharmaceutical market demand. With the upstream improvements, the bottleneck shifted towards the downstream process. New approaches rely in Anything But Chromatography methodologies and revisiting former techniques with a bioprocess perspective. Protein crystallization and precipitation methods are already implemented in the downstream process of diverse therapeutic biological macromolecules, overcoming the current chromatographic bottlenecks. Promising work is being developed in order to implement crystallization and precipitation in the purification pipeline of high value therapeutic molecules. This review focuses in the role of these two methodologies in current industrial purification processes, and highlights their potential implementation in the purification pipeline of high value therapeutic molecules, overcoming chromatographic holdups.

Santos, Â, Vilarigues M.  2017.  Sanguine Paint: Historical Recipes for Production and Application. Proceedings of Society of Glass Technology Annual Conference (SGT 2017) - Corpus Vitrearum / ICOMOS. :190-201., Cambridge