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2018
Reckien, D, Heidrich O, Church J, Pietrapertos F, De Gregorio-Hurtado S, D'Alonzo V, Foley A, Simoes SG, Lorencová EK, Orruk H, Orrum K, Wejs A, Flacke J, Olazabal M, Geneletti D, Feliu E, Vasilier S, Nador C, Krook-Riekkola A, Matosović M, A. Fokaides P, I. Ioannou B, Flamos A, Spyridaki N.  2018.  How are cities planning to respond to climate change? Assessment of local climate plans from 885 cities in the EU-28 Journal of Cleaner Production. doi: 10.1016/j.jclepro.2018.03.220. 191:207-219.
Rosa, V, Gaspari A, Folgosa F, Cordas CM, Tavares P, Santos-Silva T, Barroso S, Avilés T.  2018.  Imine Ligands Based on Ferrocene: Synthesis, Structural and Mössbauer Characterization and Evaluation as Chromogenic and Electrochemical Sensors for Hg+2. New J Chem. 42:3334-3343.Website
Cidade, MT, Ramos DJ, Santos J, Calero N, Muñoz J, Borges JP.  2018.  Injectable hydrogels based on pluronic/water systems filled with alginate microparticles: Rheological characterization. Publisher Logo Conference Proceedings. 1981:020091. AbstractWebsite

In this paper the rheological characterization of Pluronic/water systems filled with alginate microparticles is presented. The rheological characterization of the Pluronic/water systems allowed for the choice of the best Pluronic concentration taking into account its applications as injectable hydrogels for tissue repair. The effect on the rheological behavior of the addition of alginate microparticles, to be loaded with the drug, was analyzed and the maximum concentration of microparticles determined.

Simoes, S, Dias L, Gouveia JP, Seixas J, De Miglio R, A. C, M. G, Long G, Giannakidis G.  2018.  INSMART – Insights on integrated modelling of EU cities energy system transition. Energy Strategy Reviews. 20:150–155.
Gouveia, JP, Seixas J, Long G.  2018.  Mining households' energy data to disclose fuel poverty: Lessons for Southern Europe. Journal of Cleaner Production. 178:534-550. AbstractWebsite

Fuel poverty is a recognized and increasing problem in several European countries. A growing body of literature covers this topic, but dedicated analysis for Portugal are scarce despite the high perception of this condition. This paper contributes to fill this knowledge gap focusing on a European southern city while bringing new datasets and analysis to the assessment of this topic; consumer groups identification and to policy discussion. Daily electricity smart meters' registries were combined with socio-economic data, collected from door-to-door surveys, to understand the extent and the determinants of energy consumption for two contrasting consumer groups (herein called fuel poverty and fuel obesity groups). The analysis is based on the amount and annual profile of electricity consumption and was complemented with building energy simulations for relevant building typologies in those groups, to identify heating and cooling thermal performance gaps. The existence of these gaps allowed confirming and/or discarding the initial hypothesis of the poverty or obesity conditions. Results disclose socio-economic variables, as income, and consumers' behavior as key determinants of electricity consumption. It was identified a severe lack of thermal comfort levels inside households of both groups, either in cooling (98% for fuel poverty and 87% for fuel obesity) and heating seasons (98% for fuel poverty and 94% for fuel obesity). Major conclusion refers that electricity consumption cannot be used alone to segment consumer groups. This assessment may serve to support energy policy measures and instruments targeted to different consumers' groups. For example, distinct campaigns and differentiated incentives may apply to achieve energy efficiency and reduction while keep or improve indoor comfort levels.

Beira, JM, Silva MP, Condesso M, Cosme P, Almeida PL, Corvo M, Sebastião PJ, Figueirinhas JL, de Pinho MN.  2018.  Molecular order and dynamics of water in hybrid cellulose acetate–silica asymmetric membranes. Molecular Physics. :1–8.: Taylor & Francis AbstractWebsite

In this work 2H NMR spectroscopy and 1H NMR relaxometry and diffusometry were used to characterise water order and dynamics in cellulose acetate/silica asymmetric membranes. Two hydrated membranes were characterised allowing the identification of extra ordering of the water molecules and the presence in each membrane of up to two spectral components with different degrees of order and different T1 values. The mechanism behind this order increase was ascribed to the rapid exchange of the water molecules between the pore walls and its interior. T1 relaxometry dispersions allowed for the identification of the relevant mechanisms of pore-confined water motion, with rotations mediated by translational displacements (RMTD) as the dominant mechanism in the low frequency region. Using the RMTD low cut off frequency along with the in situ directly measured diffusion constant it was possible do determine characteristic lengths of correlated water motion in both membranes studied, which fall in ranges compatible with typical pore dimensions in similar membranes.

Simoes, SG, Mesnier C.  2018.  An overview of the Covenant of Mayors application in Portugal (in Portuguese).. Cities leading the Way to a Sustainable Future, http://cidadesorientadas.dgterritorio.gov.pt/. , Torres Vedras, Portugal: Centro Pastoral de Torres Vedras
Monteiro, JM, Pereira AR, Reichmann NT, Saraiva BM, Fernandes PB, Veiga H, Tavares AC, Santos M, Ferreira MT, Macário V, VanNieuwenhze MS, Filipe SR, Pinho MG.  2018.  Peptidoglycan synthesis drives an FtsZ-treadmilling-independent step of cytokinesis. Nature. 554:528-532.
Samhan-Arias, A, Maia LB, Cordas CM, Moura I, Gutierrez-Merino C, Moura JJG.  2018.  Peroxidase-like activity of cytochrome b5 is triggered upon hemichrome formation in alkaline pH. BBA - Proteins and Proteomics. 1866:373-378.
Seixas, J, Simoes SG, Fortes P, Gouveia J.  2018.  The pivotal role of electricity in the deep decarbonization of energy system: cost-effective options for Portugal. Limiting Global Warming to Well Below 2°C: Energy System Modelling and Policy Development. (Giannakidis G., K. Karlsson, M. Labriet, B. Ó Gallachóir, Eds.).: Springer, Lecture Notes in Energy 64. Springer International publishing, Doi: 10.1007/978-3-319-74424-7
Salvia, M, Simoes S, Fueyo N, Cosmi C, Papadopoulou K, Gouveia JP, et al.  2018.  The PrioritEE Approach to Reinforce the Capacities of Local Administrations in the Energy Management of Public Buildings. New Metropolitan Perspectives. ISHT 2018. Smart Innovation, Systems and Technologies, Springer. 101
Santos, Â, Vilarigues M.  2018.  Sanguine paint: production, characterization, and adhesion to the glass substrate. Studies in Conservation. 64(4):221-239.
Pádua, AC, Osório D, Rodrigues J, Santos G, Porteira A, Palma S, Roque A, Gamboa H.  2018.  Scalable and Easy-to-use System Architecture for Electronic Noses. In Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies . :179-186., Madeira: BIODEVICES AbstractPDF

The purpose of this work was the development of a scalable and easy-to-use electronic noses (E-noses) system architecture for volatile organic compounds sensing, towards the final goal of using several E-noses acquiring large datasets at the same time. In order to accomplish this, each E-nose system is comprised by a delivery system, a detection system and a data acquisition and control system. In order to increase the scalability, the data is stored in a database common to all E-noses. Furthermore, the system was designed so it would only require five simple steps to setup a new E-nose if needed, since the only parameter that needs to be changed is the ID of the new E-nose. The user interacts with a node using an interface, allowing for the control and visualization of the experiment. At this stage, there are three different E-nose prototypes working with this architecture in a laboratory environment.

Braz, L, Grenha A, Corvo MC, Lourenço JP, Ferreira D, Sarmento B, da Costa ARM.  2018.  Synthesis and characterization of Locust Bean Gum derivatives and their application in the production of nanoparticles. Carbohydrate Polymers. 181:974–985.: Elsevier AbstractWebsite

The development of LBG-based nanoparticles intending an application in oral immunization is presented. Nanoparticle production occurred by mild polyelectrolyte complexation, requiring the chemical modification of LBG. Three LBG derivatives were synthesized, namely a positively charged ammonium derivative (LBGA) and negatively charged sulfate (LBGS) and carboxylate (LBGC) derivatives. These were characterized by Fourier-transform infrared spectroscopy, elemental analysis, nuclear magnetic resonance spectroscopy, gel permeation chromatography, and x-ray diffraction. As a pharmaceutical application was aimed, a toxicological analysis of the derivatives was performed by both MTT test and LDH release assay.

Several nanoparticle formulations were produced using LBGA or chitosan (CS) as positively charged polymers, and LBGC or LBGS as negatively charged counterparts, producing nanoparticles with adequate properties regarding an application in oral immunization.

Vieira, T, Silva JC, Borges JP, Henriques C.  2018.  Synthesis, electrospinning and in vitro test of a new biodegradable gelatin-based poly(ester urethane urea) for soft tissue engineering. European Polymer Journal. 103:271-281. AbstractWebsite

Biodegradable polyurethanes have been studied as scaffolds for tissue engineering due to their adjustable physico-chemical properties. In this work, we synthesized a biodegradable gelatin-based poly(urethane urea) using polycaprolactone-diol, as soft segment, and isophorone diisocyanate and gelatin from cold water fish skin as hard segment. The synthesis was confirmed by Fourier transform infrared spectroscopy and proton nuclear magnetic resonance and the influence of the amount of gelatin introduced in the polymer backbone was analyzed by thermal analysis. Gelatin-based poly(urethane urea) electrospun fibrous mats and solvent cast films were then produced and their physico-chemical and biological properties studied. They present an amorphous structure, elastomeric behavior and water contact angles typical of hydrophobic surfaces. Hydrolytic degradation was analyzed in phosphate buffer saline (PBS), lipase and trypsin solutions. No mass changes were detected during 37 days in PBS and trypsin while significant degradation by lipase was observed. Human foetal foreskin fibroblasts were seeded on the fibrous mats and films. Populations were evaluated by colorimetric cell viability assays and morphology by fluorescence imaging. The substrates supported cell adhesion and proliferation. The novel gelatin-based poly(urethane urea) fibrous mats offer attractive physico-chemical and biological properties for soft tissue engineering applications.

Teixeira, LR, Dantas JM, Salgueiro CA, Cordas CM.  2018.  Thermodynamic and kinetic properties of the outer membrane cytochrome OmcF, a key protein for extracellular electron transfer in Geobacter sulfurreducens. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1859(10):1132-1137. AbstractWebsite

Gene knock-out studies on Geobacter sulfurreducens have shown that the monoheme c-type cytochrome OmcF is essential for the extracellular electron transfer pathways involved in the reduction of iron and uranium oxy-hydroxides, as well as, on electricity production in microbial fuel cells. A detailed electrochemical characterization of OmcF was performed for the first time, allowing attaining kinetics and thermodynamic data. The heterogeneous electron transfer rate constant was determined at pH 7 (0.16 ± 0.01 cm s−1) indicating that the protein displays high electron transfer efficiency compared to other monoheme cytochromes. The pH dependence of the redox potential indicates that the protein has an important redox-Bohr effect in the physiological pH range for G. sulfurreducens growth. The analysis of the structures of OmcF allowed us to assign the redox-Bohr centre to the side chain of His47 residue and its pKa values in the reduced and oxidized states were determined (pKox = 6.73; pKred = 7.55). The enthalpy, entropy and Gibbs free energy associated with the redox transaction were calculated, pointing the reduced form of the cytochrome as the most favourable. The data obtained indicate that G. sulfurreducens cells evolved to warrant a down-hill electron transfer from the periplasm to the outer-membrane associated cytochrome OmcF.

Semeano, ATS, Maffei DF, Palma S, Li RWC, Franco BDGM, Roque ACA, Gruber J.  2018.  Tilapia fish microbial spoilage monitored by a single optical gas sensor. Food Control. 89:72-76. AbstractPDFWebsite

As consumption of fish and fish-based foods increases, non-destructive monitoring of fish freshness also becomes more prominent. Fish products are very perishable and prone to microbiological growth, not always easily detected by organoleptic evaluation. The analysis of the headspace of fish specimens through gas sensing is an interesting approach to monitor fish freshness. Here we report a gas sensing method for monitoring Tilapia fish spoilage based on the application of a single gas sensitive gel material coupled to an optical electronic nose. The optical signals of the sensor and the extent of bacterial growth were followed over time, and results indicated good correlation between the two determinations, which suggests the potential application of this simple and low cost system for Tilapia fish freshness monitoring.

Samhan-Arias, AK, Almeida RM, Ramos S, Cordas CM, Moura I, Gutierrez-Merino C, Moura JJG.  2018.  Topography of human cytochrome b5/cytochrome b5 reductase interacting domain and redox alterations upon complex formation. Biochim Biophys Acta. 1859:78-87.
Ferreira, MR, Dantas JM, Salgueiro CA.  2018.  The triheme cytochrome PpcF from Geobacter metallireducens exhibits distinct redox properties. FEBS Open Bio. , Number ja AbstractWebsite

Abstract Electrogenic bacteria, such as Geobacter, can couple the oxidation of carbon sources to the reduction of extracellular electron acceptors; such acceptors include toxic and radioactive metals, as well as electrode surfaces, making Geobacter a suitable candidate for applied use in bioremediation and bioenergy generation. Geobacter metallireducens is more promising in this regard than the better studied Geobacter sulfurreducens, as it has more efficient Fe (III) reduction rates and can respire nitrate to ammonia. The operon responsible for nitrate reductase activity in G. metallireducens includes the gene encoding the cytochrome PpcF, which was proposed to exchange electrons with nitrate reductase. In the present work, we perform a biochemical and biophysical characterization of PpcF. Spectroscopic techniques, including circular dichroism (CD), UV-visible, and nuclear magnetic resonance (NMR) revealed that the cytochrome is very stable (Tm > 85 °C), contains three low-spin hemes, and is diamagnetic (S=0) and paramagnetic (S=1/2) in the reduced and oxidized states, respectively. The NMR chemical shifts of the heme substituents were assigned and used to determine the heme core architecture of PpcF. Compared to the PpcA-family from G. sulfurreducens, the spatial disposition of the hemes is conserved, but the functional properties are clearly distinct. In fact, potentiometric titrations monitored by UV-visible absorption reveal that the reduction potential values of PpcF are significantly less negative (-56 and -64 mV, versus the normal hydrogen electrode at pH 7.0 and 8.0, respectively). NMR redox titrations showed that the order of oxidation of the hemes is IV-I-III a feature not observed for G. sulfurreducens. The different redox properties displayed by PpcF, including the small redox-Bohr effect and low reduction potential value of heme IV, were structurally rationalized and attributed to the lower number of positively charged residues located in the vicinity of heme IV. Overall, the redox features of PpcF suggest that biotechnological applications of G. metallireducens may require less negative working functional redox windows than those using by G. sulfurreducens.

Cruz, J, Silva H, Lopes J, Rocha J, Jesus AP.  2018.  Very high fluence nitrogen implantations in metals studied by Rutherford Backscattering Spectrometry. :169-173.: Surface and Coatings Technology, 355surfcoattechnology-355-2018.pdf
dos Santos, LM, Ligabue R, Dumas A, Le Roux C, Micoud P, Meunier J-F, Martin F, Corvo M, Almeida P, Einloft S.  2018.  Waterborne polyurethane/Fe3O4-synthetic talc composites: synthesis, characterization, and magnetic properties. Polymer Bulletin. :1–16.: Springer Berlin Heidelberg AbstractWebsite

Nano-Fe3O4-synthetic talc gel was used as filler in the synthesis of waterborne polyurethane/Fe3O4-synthetic talc nanocomposites. This filler presents numerous edges (Si–O and Mg–O) and OH groups easily forming hydrogen bonds and polar interaction with water conferring hydrophilic character, consequently improving filler dispersion within a water-based matrix. Yet, the use of waterborne polyurethane (WPU) as matrix must be highlighted due to its environmentally friendly characteristics and low toxicity compared to solvent-based product. Fe3O4-synthetic talc-nanofillers were well dispersed into the polyurethane matrix even at high filler content as supported by XRD and TEM analyses. NMR indicates the interaction of filler OH groups with the matrix. For all nanocomposites, one can see a typical ferromagnetic behavior below Curie temperature (about 120 K) and a superparamagnetic behavior above this temperature. The use of Fe3O4-synthetic talc for obtaining magnetic nanocomposites resulted in improved materials with superior mechanical properties compared to solvent-based nanocomposites.

Pinto, ACM, Sanjad TABC, Angélica RS, da Costa ML, Paiva RS, Palomar T.  2018.  19th century stained-glass windows from Belém do Pará (Brazil): Analytical characterisation and pathology. Boletín de la Sociedad Española de Cerámica y Vidrio. 57:133-141., Number 4 AbstractWebsite

The aim of this work was to determine the physico-chemical characteristics of the stained-glass windows into the 19th century of two mausoleums located in the city of Belém do Pará (Brazil), and to evaluate their state of conservation. The glass chemical composition was determined by WXRF and SEM/EDS. The samples’ morphology and the microorganisms’ identification were carried out by optical microscopy. The results indicated that the samples were soda-lime silicate glass, with approximately 70wt. % of SiO2, which contributed to the resistance of the stained glass to the weathering. The concentration of Na2O was normally twice the K2O, which contrasts with the composition of other panels produced during the same period, as reported in the literature. The biofilm is composed by cyanobacteria and rotifers. Overall, the panels analysed were in a good state of conservation, despite their exposure to tropical climate conditions for more than a century with no preventive measures whatsoever. Resumen El objetivo del presente trabajo fue determinar las características físico-químicas de las vidrieras del siglo XIX correspondientes a dos mausoleos ubicados en la ciudad de Belém do Pará (Brasil) para evaluar su estado de conservación. La composición química del vidrio fue determinada por WXRF y SEM/EDS. La morfología de las muestras y la identificación de los microorganismos fueron realizadas por microscopia óptica. Los resultados indicaron que las muestras eran vidrios de silicato sódico-cálcico, con aproximadamente el 70% en peso de SiO2, lo que aumentó la resistencia a la corrosión de los vidrios de estas vidrieras. La concentración de Na2O fue normalmente el doble que de K2O, lo que contrasta con la composición de otros paneles producidos durante el mismo período, de acuerdo con la literatura. El biofilm presentó cianobacterias y rotíferas. En general, los paneles analizados presentaban un buen estado de conservación, a pesar de su exposición a las condiciones climáticas tropicales durante más de un siglo, sin las medidas de conservación preventivas.

Portela, PC, Fernandes TM, Dantas JM, Ferreira MR, Salgueiro CA.  2018.  Biochemical and functional insights on the triheme cytochrome PpcA from Geobacter metallireducens. Archives of Biochemistry and Biophysics. 644:8-16. AbstractWebsite

G. metallireducens bacterium has highly versatile respiratory pathways that provide the microorganism an enormous potential for many biotechnological applications. However, little is known about the structural and functional properties of its electron transfer components. In this work, the periplasmic cytochrome PpcA from G. metallireducens was studied in detail for the first time using complementary biophysical techniques, including UV–visible, CD and NMR spectroscopy. The results obtained showed that PpcA contains three low-spin c-type heme groups with His-His axial coordination, a feature also observed for its homologue in G. sulfurreducens. However, despite the high sequence homology between the two cytochromes, important structural and functional differences were observed. The comparative analysis of the backbone, side chain and heme substituents NMR signals revealed differences in the relative orientation of the hemes I and III. In addition, redox titrations followed by visible spectroscopy showed that the redox potential values for PpcA from G. metallireducens (−78 and −93 mV at pH 7 and 8, respectively) are considerably less negative. Overall, this study provides biochemical and biophysical data of a key cytochrome from G. metallireducens, paving the way to understand the extracellular electron transfer mechanisms in these bacteria.

Ferreira, MR, Salgueiro CA.  2018.  Biomolecular Interaction Studies Between Cytochrome PpcA From Geobacter sulfurreducens and the Electron Acceptor Ferric Nitrilotriacetate (Fe-NTA). Frontiers in Microbiology. 9:2741. AbstractWebsite

Geobacter sulfurreducens is a dissimilatory metal-reducing bacterium that exhibits an enormous respiratory versatility, including the utilization of several toxic and radioactive metals as electron acceptors. This versatility is also replicated in the capability of the most abundant cytochrome in G. sulfurreducens, the periplasmic triheme cytochrome PpcA, to reduce uranium, chromium and other metal ions. From all possible electron transfer pathways in G. sulfurreducens, those involved in the iron reduction are the best characterized to date. In a previous work we provided structural evidence for the complex interface established between PpcA and the electron acceptor Fe(III)-citrate. However, genetic studies suggested that this acceptor is mainly reduced by outer membrane cytochomes. In the present work, we used UV-visible measurements to demonstrate that PpcA is able to directly reduce the electron acceptor ferric nitrilotriacetic acid (Fe-NTA), a more outer membrane permeable iron chelated form. In addition, the molecular interactions between PpcA and Fe-NTA were probed by Nuclear Magnetic Resonance (NMR) spectroscopy. The NMR spectra obtained for natural abundance and 15N-enriched PpcA samples in the absence and presence of Fe-NTA showed that the interaction is reversible and encompasses a positively charged surface region located in the vicinity of the heme IV. Overall, the study provides for the first time a clear illustration of the formation of an electron transfer complex between PpcA and a readily outer-membrane permeable iron chelated form. The structural and functional relationships obtained explain how a single cytochrome is designed to effectively interact with a wide range of G. sulfurreducens electron acceptors, a feature that can be explored for optimal bioelectrochemical applications.