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2014
Soares, PIP, Alves A, Pereira L, Coutinho J, Ferreira I, Novo C, Borges JP.  2014.  Effects of surfactants on the magnetic properties of iron oxide colloids. Journal of Colloid and Interface Science. 419:46–51. AbstractWebsite

Iron oxide nanoparticles are having been extensively investigated for several biomedical applications such as hyperthermia and magnetic resonance imaging. However, one of the biggest problems of these nanoparticles is their aggregation.
Taking this into account, in this study the influence of three different surfactants (oleic acid, sodium citrate and Triton X-100) each one with various concentrations in the colloidal solutions stability was analyzed by using a rapid and facile method, the variation in the optical absorbance along time.
The synthesized nanoparticles through chemical precipitation showed an average size of 9 nm and a narrow size distribution. X-ray diffraction pattern and Fourier Transform Infrared analysis confirmed the presence of pure magnetite. SQUID measurements showed superparamagnetic properties with a blocking temperature around 155 K. In addition it was observed that neither sodium citrate nor Triton X-100 influences the magnetic properties of the nanoparticles. On the other hand, oleic acid in a concentration of 64 mM decreases the saturation magnetization from 67 to 45 emu/g. Oleic acid exhibits a good performance as stabilizer of the iron oxide nanoparticles in an aqueous solution for 24 h, for concentrations that lead to the formation of the double layer.

Soares, PIP, Alves AMR, Pereira LCJ, Coutinho JT, Ferreira IMM, Novo CMM, Borges JPMR.  2014.  Effects of surfactants on the magnetic properties of iron oxide colloids. J. Colloid Interface Sci.. 419:46-51. AbstractWebsite

Iron oxide nanoparticles are having been extensively investigated for several biomedical applications such as hyperthermia and magnetic resonance imaging. However, one of the biggest problems of these nanoparticles is their aggregation.

Taking this into account, in this study the influence of three different surfactants (oleic acid, sodium citrate and Triton X-100) each one with various concentrations in the colloidal solutions stability was analyzed by using a rapid and facile method, the variation in the optical absorbance along time.

The synthesized nanoparticles through chemical precipitation showed an average size of 9 nm and a narrow size distribution. X-ray diffraction pattern and Fourier Transform Infrared analysis confirmed the presence of pure magnetite. SQUID measurements showed superparamagnetic properties with a blocking temperature around 155 K. In addition it was observed that neither sodium citrate nor Triton X-100 influences the magnetic properties of the nanoparticles. On the other hand, oleic acid in a concentration of 64 mM decreases the saturation magnetization from 67 to 45 emu/g. Oleic acid exhibits a good performance as stabilizer of the iron oxide nanoparticles in an aqueous solution for 24 h, for concentrations that lead to the formation of the double layer.

Pereira, Goncalves, Correia, Nuno, Pinto, Joana, Pereira, Martins, Fortunato E.  2014.  Electrochromic behavior of NiO thin films deposited by e-beam evaporation at room temperature. Solar Energy Materials and Solar Cells. 120:109-115.
Dantas, JM, Morgado L, Catarino T, Kokhan O, Pokkuluri PR, Salgueiro CA.  2014.  Evidence for interaction between the triheme cytochrome PpcA from Geobacter sulfurreducens and anthrahydroquinone-2,6-disulfonate, an analog of the redox active components of humic substances. Biochim Biophys Acta. 1837(6):750-760. AbstractWebsite

The bacterium Geobacter sulfurreducens displays an extraordinary respiratory versatility underpinning the diversity of electron donors and acceptors that can be used to sustain anaerobic growth. Remarkably, G. sulfurreducens can also use as electron donors the reduced forms of some acceptors, such as the humic substance analog anthraquinone-2,6-disulfonate (AQDS), a feature that confers environmentally competitive advantages to the organism. Using UV-visible and stopped-flow kinetic measurements we demonstrate that there is electron exchange between the triheme cytochrome PpcA from Gs and AQDS. 2D-(1)H-(15)N HSQC NMR spectra were recorded for (15)N-enriched PpcA samples, in the absence and presence of AQDS. Chemical shift perturbation measurements, at increasing concentration of AQDS, were used to probe the interaction region and to measure the binding affinity of the PpcA-AQDS complex. The perturbations on the NMR signals corresponding to the PpcA backbone NH and heme substituents showed that the region around heme IV interacts with AQDS through the formation of a complex with a definite life time in the NMR time scale. The comparison of the NMR data obtained for PpcA in the presence and absence of AQDS showed that the interaction is reversible. Overall, this study provides for the first time a clear illustration of the formation of an electron transfer complex between AQDS and a G. sulfurreducens triheme cytochrome, shedding light on the electron transfer pathways underlying the microbial oxidation of humics.

Pina, AS, Batalha ÍL, Fernandes CSM, Aoki MA, Roque ACA.  2014.  Exploring the potential of magnetic antimicrobial agents for water disinfection. Water Research. 66:160–168. AbstractWebsite

Industrial and urban activities yield large amounts of contaminated groundwater, which present a major health issue worldwide. Infectious diseases are the most common health risk associated with drinking-water and wastewater remediation is a major concern of our modern society. The field of wastewater treatment is being revolutionized by new nano-scale water disinfection devices which outperform most currently available technologies. In particular, iron oxide magnetic nanoparticles (MNPs) have been widely used in environmental applications due to their unique physical–chemical properties. In this work, poly(ethylene) glycol (PEG)-coated MNPs have been functionalized with (RW)3, an antimicrobial peptide, to yield a novel magnetic-responsive support with antimicrobial activity against Escherichia coli K-12 DSM498 and Bacillus subtilis 168. The magnetic-responsive antimicrobial device showed to be able to successfully disinfect the surrounding solution. Using a rapid high-throughput screening platform, the minimal inhibitory concentration (MIC) was determined to be 500 μM for both strains with a visible bactericidal effect.

Ruivo, A, Andrade S, Rocha J, Laia C, Pina F.  2014.  Formation of Photoluminescent Lead Bromide Nanoparticles on Aluminoborosilicate Glass. Journal of Physical Chemistry C. (118):12436–12442.
de Almeida, MP, Pereira E, Baptista P, Gomes I, Figueiredo S, Soares L, Franco R.  2014.  Gold Nanoparticles as (bio)chemical Sensors. Comprehensive Analytical Chemistry; Gold Nanoparticles in Analytical Chemistry . (Valcárcel, M., López-Lorente, A.I., Eds.).:529–567., Amsterdam: Elsevier
Pereira, Gaspar, Diana, Guerin, D., Delattre, A., Fortunato, Martins R.  2014.  The influence of fibril composition and dimension on the performance of paper gated oxide transistors. Nanotechnology . 25:11pp.
Luis, DV, Silva J, Tomaz AI, de Almeida RF, Larguinho M, Baptista PV, Martins LM, Silva TF, Borralho PM, Rodrigues CM, Rodrigues AS, Pombeiro AJ, Fernandes AR.  2014.  Insights into the mechanisms underlying the antiproliferative potential of a Co(II) coordination compound bearing 1,10-phenanthroline-5,6-dione: DNA and protein interaction studies. J Biol Inorg Chem. 19(6):787-803.14luisjbic.pdf
Fortes, P, Pereira R, Pereira A, Seixas J.  2014.  Integrated technological-economic modeling platform for energy and climate policy analysis. Energy. 73:716–730.: Elsevier Ltd AbstractWebsite

CGE (computable general equilibrium) and bottom-up models each have unique strengths and weakness in evaluating energy and climate policies. This paper describes the development of an integrated technological, economic modeling platform (HYBTEP), built through the soft-link between the bottom-up TIMES (The Integrated MARKAL-EFOM system) and the CGE GEM-E3 models. HYBTEP combines cost minimizing energy technology choices with macroeconomic responses, which is essential for energy-climate policy assessment. HYBTEP advances on other hybrid tools by assuming 'full-form' models, integrating detailed and extensive technology data with disaggregated economic structure, and 'full-link', i.e., covering all economic sectors. Using Portugal as a case study, we examine three scenarios: (i) the current energy-climate policy, (ii) a CO2 tax, and (iii) renewable energy subsidy, with the objective of assessing the advantages of HYBTEP vis-à-vis bottom-up approach. Results show that the economic framework in HYBTEP partially offsets the increase or decrease in energy costs from the policy scenarios, while TIMES is very sensitive to energy services-price elasticities, setting a wide range of results. HYBTEP allows the computation of the economic impacts of policies in a technological detailed environment. The hybrid platform increases transparency of policy analysis by making explicit the mechanisms through which energy demand evolves, resulting in high confidence for decision-making. © 2014 Elsevier Ltd.

Veigas, Bruno, Branquinho, R., Pinto, Joana, Wojcik, Pawel Jerzy, Martins, Fortunato, Baptista PV.  2014.  Ion sensing (EIS) real-time quantitative monitorization of isothermal DNA amplification. Biosensors and Bioelectronics. 52:50-55.
Soares L, Csáki A, Fritzsche W, Orfeu F, Franco R, Pereira E.  2014.  LOCALIZED SURFACE PLASMON RESONANCE (LSPR) BIOSENSING USING GOLD NANOTRIANGLES: DETECTION OF DNA HYBRIDIZATION EVENTS AT ROOM-TEMPERATURE. Analyst. 139:4964-4973.
Carepo, MS, Pauleta SR, Wedd AG, Moura JJG, Moura I.  2014.  Mo-Cu metal cluster formation and binding in an orange protein isolated from Desulfovibrio gigas. J Biol Inorg Chem. 19:605-614.
Amado, MP, Poggi F, Amado AR.  2014.  Modelo de Cidade Energeticamente Eficiente. , Lisboa: Editora Caleidoscópio_Edição e Artes Gráficas, SA, ISBN: 978-989-6582-69-2
Gaspar, Diana, Fernandes, de Oliveira, Pedro Guedes, Fernandes, Grey, P., Pontes, R. V., Pereira, Martins, Godinho, M. H., Fortunato E.  2014.  Nanocrystalline cellulose applied simultaneously as the gate dielectric and the substrate in flexible field effect transistors. Nanotechnology. 25(9)
Bird, LJ, Saraiva IH, Park S, Calçada EO, Salgueiro CA, Nitschke W, Louro RO, Newman DK.  2014.  Nonredundant roles for cytochrome c2 and two high-potential iron-sulfur proteins in the photoferrotroph Rhodopseudomonas palustris TIE-1. J Bacteriol. 196(4):850-858. AbstractWebsite

The purple bacterium Rhodopseudomonas palustris TIE-1 expresses multiple small high-potential redox proteins during photoautotrophic growth, including two high-potential iron-sulfur proteins (HiPIPs) (PioC and Rpal_4085) and a cytochrome c2. We evaluated the role of these proteins in TIE-1 through genetic, physiological, and biochemical analyses. Deleting the gene encoding cytochrome c2 resulted in a loss of photosynthetic ability by TIE-1, indicating that this protein cannot be replaced by either HiPIP in cyclic electron flow. PioC was previously implicated in photoferrotrophy, an unusual form of photosynthesis in which reducing power is provided through ferrous iron oxidation. Using cyclic voltammetry (CV), electron paramagnetic resonance (EPR) spectroscopy, and flash-induced spectrometry, we show that PioC has a midpoint potential of 450 mV, contains all the typical features of a HiPIP, and can reduce the reaction centers of membrane suspensions in a light-dependent manner at a much lower rate than cytochrome c2. These data support the hypothesis that PioC linearly transfers electrons from iron, while cytochrome c2 is required for cyclic electron flow. Rpal_4085, despite having spectroscopic characteristics and a reduction potential similar to those of PioC, is unable to reduce the reaction center. Rpal_4085 is upregulated by the divalent metals Fe(II), Ni(II), and Co(II), suggesting that it might play a role in sensing or oxidizing metals in the periplasm. Taken together, our results suggest that these three small electron transfer proteins perform different functions in the cell.

Jordao, N, Cabrita L, Pina F, Branco LC.  2014.  Novel Bipyridinium Ionic Liquids as Liquid Electrochromic Devices. CHEMISTRY-A EUROPEAN JOURNAL. 20(4):3982-3988.
Maiti, BK, Maia LB, Pal K, Pakira B, Aviles T, Moura I, Pauleta SR, Nuñez JL, Rizzi AC, Brondino CD, Sarkar S, Moura JJG.  2014.  One Electron Reduced Square Planar Bis(benzene-1,2-dithiolato) Copper Dianionic Complex and Redox Switch by O2/HO-. Inorg Chem. 53:12799-12808.
Martins, P, Marques M, Coito L, Pombeiro AJ, Baptista PV, Fernandes AR.  2014.  Organometallic compounds in cancer therapy: past lessons and future directions. Anticancer Agents Med Chem. 14(9):1199-212.14martinsaamc.pdf
Dourado, CG, Duarte MA, Grosso AR, Bastos-Silveira C, Marrero P, Oliveira P, Paulo OS, Dias D.  2014.  Phylogenetic origin of the endemic pigeons from Madeira (Columba trocaz) and Azores Islands (Columba palumbus azorica). Journal of Ornithology. 155:71–82., Number 1 Abstract

This study addresses for the first time the issue of pigeon (genus Columba) phylogeny within the archipelagos of Madeira ( Columba trocaz) and Azores ( C. palumbus azorica), located in the singular biogeographic area of Macaronesia. The phylogeny of these endemic pigeons was inferred based on mitochondrial (cytochrome b and cytochrome c oxidase I) and nuclear ($\beta$-fibrinogen intron 7) genetic markers through multiple approaches. Despite the non-monophyletic pattern for the insular endemic species recovered in the phylogenies, topology tests presented somewhat different results. C. trocaz, the Madeiran endemic species, clustered strongly with the Canarian endemic C. bollii, and these two are thus more closely related to each other than C. bollii to C. junoniae, the other endemic species of Canary Islands, which seems to have diverged independently. Moreover, C. trocaz was found to be phylogenetically closer to C. bollii than to C. palumbus from mainland Europe and Azores Islands. No genetic differentiation was found between the continental C. p. palumbus and the endemic C. p. azorica, which suggests a relatively recent colonisation event of the Azores Islands. (English) [ABSTRACT FROM AUTHOR]

Sampaio, JM, Madeira TI, Parente F, Indelicato P.  2014.  Relativistic calculations of M-shell photoionization and X-ray production cross-sections for Hg at 5.96 keV excitation energy. Radiation Physics and Chemistry. AbstractWebsite

In this work we calculate photoionization and X-ray production cross-sections (XPCS) of M-shell vacancies in Hg at incident photon energy of 5.96 keV (low.

Amado, MP, Poggi F.  2014.  Solar Energy Integration in Urban Planning: GUUD model. Energy Procidea. ISSN: 1876-6102 (14)00770-X (50):277-284.Website
Amado, MP, Poggi F.  2014.  Solar urban planning: a parametric approach. Energy Procedia . ISSN: 1876-6102 (50):1539–1548.Website
Quaresma P, Osório I, Doria G, Carvalho PA, Pereira A, Langer J, Araújo JP, Pastoriza-Santos I, Liz-Marzán LM, Franco R, Baptista P, Pereira E.  2014.  STAR-SHAPED MAGNETITE@GOLD NANOPARTICLES FOR PROTEIN MAGNETIC SEPARATION AND SERS DETECTION. RSC Adv. 4(8):3659-3667.