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2026
Fatima, A, Saif HM, Nascimento FX, Pawlowski S, Crespo JG.  2026.  Selective lithium recovery using bacterial cellulose acetate membranes: toward green recycling of spent Li-ion batteries. Journal of Membrane Science. 737:124776. AbstractWebsite

The global transition to electric vehicles and renewable energy systems has heightened the demand for lithium-ion batteries (LIBs), creating an urgent need for sustainable battery recycling methods to recover critical raw materials, including lithium. Lithium-selective cation-exchange polymeric membranes are one of the emerging options to achieve such lithium recycling. To make this change even greener, instead of using traditional fossil-origin polymers to produce membranes, this research employed bacterial cellulose acetate (BCA), a bio-derived and eco-friendly polymer. By adding 5 wt% N-methyl-N-propylpiperidinium bis(trifluoromethanesulfonyl)imide (PP13–TFSI), an ionic liquid (IL) which is a plasticizer and lithium-ion conductor, and 20 wt% hydrogen manganese oxide (HMO), which is a lithium-selective inorganic filler, four BCA-based membranes (BCA, BCA-IL, BCA-HMO and BCA-IL-HMO) were prepared. The membranes were extensively characterized for their morphology, thermal stability, chemical, and mechanical properties. Subsequently, they were tested in diffusion cells (without applying any external driving force) for ionic conductivity, lithium selectivity, and lithium flux using binary salt mixtures and synthetic LIB leachate. The BCA-IL membrane outperformed other BCA-based membranes in terms of separation factors, achieving values of 10.50 (Li+/Mn2+), 11.75 (Li+/Ni2+), and 10.95 (Li+/Co2+) with a lithium flux of 0.12 mol m−2 h−1 when processing synthetic LIB leachate. Under the same conditions, the BCA-HMO membranes exhibited a higher lithium flux (0.51 mol m−2 h−1) but with lower separation factor values of 3.39 (Li+/Mn2+), 3.62 (Li+/Ni2+), and 3.36 (Li+/Co2+). The use of plant-derived cellulose acetate (CA) as an alternative to BCA was also assessed; however, despite promising ideal lithium selectivity values (for example, 112 for Li+/Ni2+ in the case of CA-HMO membrane), their conductivity was up to two orders of magnitude lower than that of BCA-based membranes. All these findings highlight the promising potential of BCA-based membranes for lithium recovery from lithium-ion battery leachates.

2025
Phillips, AF, Ferreira LM, Branco PS, Lourenço A.  2025.  The Synthesis of Terpenes Via Enantioselective Organocatalysis. Asian J. Org. Chem.. :e202500229.
Saif, HM, Gebretatios AG, Huertas RM, Crespo JG, Pawlowski S.  2025.  Single solvent synthesis of lithium-selective hydrogen manganese oxide (HMO)-based mixed matrix membranes. Green Chemical Engineering. AbstractWebsite

The rising lithium-ion battery market drives lithium demand and requires efficient and selective lithium recovery methods from aqueous sources. Membrane technologies can address environmental and inherent efficiency issues in conventional lithium extraction methods. This study presents the synthesis of novel lithium-selective mixed matrix membranes (MMMs) by integrating 0–30 wt% of a lithium selective filler named hydrogen manganese oxide (HMO) into a sulfonated polyethersulfone (SPES)-Nafion polymer matrix. The membranes were produced by casting and thoroughly examined to assess their chemical, physical, morphological, thermal, and mechanical characteristics. The transport of lithium across membranes was evaluated in diffusion and electro-diffusion studies. The membrane containing 20 wt% of HMO exhibited the highest ideal selectivity values, which were 1.05 for Li+/K+, 1.20 for Li+/Na+, and 13.36 for Li+/Mg2+; and more than 97% increase in lithium-ion conductivity when compared with the control membrane without HMO. In diffusion experiments, the binary separation factors for Li+/K+, Li+/Na+, and Li+/Mg2+ were 0.71, 1.52, and 11.83, respectively, while under electro-diffusion conditions, the corresponding values were 0.82, 1.55, and 9.88. Above 20 wt% of HMO, membranes lose their separation capacity as HMO aggregates inside the membrane structure. The higher selectivity of membranes towards Li+ in the presence of Mg2+ is due to magnesium's larger hydrated radius and higher hydration energy compared to lithium. Overall, the prepared membranes demonstrated a promising potential for green lithium recovery. This study facilitates the advancement of sustainable lithium-selective MMM synthesis.

Pereira, BA, Matos CT, Costa L, Ferreira LM, Crespo JG, Brazinha C.  2025.  Sustainable processing of microalgae protein: Design of biphasic partitioning systems based on natural deep eutectic solvents for C-phycocyanin recovery from model aqueous solutions. Separation and Purification Technology. 353:128510. AbstractWebsite

The development of sustainable protein sources is imperative for addressing the global challenge of food/feed security. Microalgae, which may be sustainably cultivated, are a promising source of proteins, gaining a progressive acceptance among consumers. The purpose of this work is to study the recovery of the protein C-phycocyanin from the microalga Arthrospira platensis (Spirulina), using a biphasic extraction system composed of sustainable solvents. The extraction system studied involves a feed phase, consisting of an aqueous salt solution and the target protein, and an extracting phase composed of a Natural Deep Eutectic Solvent (NADES) with affinity to the target protein. The performance of a specific NADES depends on the characteristics of the components of the NADES, in terms of its hydrophobicity/hydrophilicity balance, aiming the highest possible partitioning coefficient towards C-phycocyanin. It is also important to assure that the NADES phase selected presents a moderate viscosity and leads to a stable interface when in contact with the aqueous feed phase (i.e., presenting a measurable interfacial tension). In this work, after an extensive screening work of more than 71 combinations, the most overall performing combination is presented. This system shows a high partitioning coefficient of 29.4 ± 0.3 and an extraction yield of 99 % for C-phycocyanin (C-PC), demonstrating that the salting-out effect of the phosphate buffer and the hydrophobic character of NADES play a key role in this protein partitioning and recovery.

2024
Sarrato, J, Raimundo B, Domingues L, Filipe SR, Lima CJ, Branco PS.  2024.  Synthesis of inverse push-pull coumarin dyes and their application as solvatochromic probes and labelling agents for bacterial cell membranes, SEP. DYES AND PIGMENTS. 228 Abstract
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Oliveira, BB, Fernandes AR, Baptista PV.  2024.  Shrinking Cancer Research Barriers: Crafting Accessible Tumor-on-Chip Device for Gene Silencing Assays, nov. Advanced Engineering Materials. : John Wiley & Sons, Ltd. Abstract

Tumor-on-chip (ToC) is crucial to bridge the gap between traditional cell culture experiments and in vivo models, allowing to recreate an in vivo-like microenvironment in cancer research. ToC use microfluidics to provide fine-tune control over environmental factors, high-throughput screening, and reduce requirements of samples and reagents. However, creating these microfluidic devices requires skilled researchers and dedicated manufacturing equipment, making widespread adoption cumbersome and difficult. To address some bottlenecks and improve accessibility to ToC technology, innovative materials and fabrication processes are required. Polystyrene (PS) is a promising material for microfluidics due to its biocompatibility, affordability, and optical transparency. Herein, a fabrication process based on direct laser writing on thermosensitive PS, allowing the swift and economical crafting of devices with easy pattern alterations, is presented. For the first time, a device for cell culture fabricated only by PS is presented, allowing customizing and optimization for efficient cell culture approaches. These biochips support 2D and 3D cultures with comparable viability and proliferation kinetics to traditional 96-well plates. The data show that gene and protein silencing efficiencies remain consistent across both chip and plate-based cultures, either 2D culture or 3D spheroid format. Although simple, this approach might facilitate the use of customized chip-based cancer models.

Vilela-Alves, G, Manuel RR, Viegas A, Carpentier P, Biaso F, Guigliarelli B, Pereira IC, Romão MJ, Mota C.  2024.  Substrate-dependent oxidative inactivation of a W-dependent formate dehydrogenase involving selenocysteine displacement, 2024. Chemical Science. :-.: The Royal Society of Chemistry AbstractWebsite

Metal-dependent formate dehydrogenases are very promising targets for enzyme optimization and design of bio-inspired catalysts for CO2 reduction, towards innovative strategies for climate change mitigation. For effective application of these enzymes, the catalytic mechanism must be better understood, and the molecular determinants clarified. Despite numerous studies, several doubts persist, namely regarding the role played by the possible dissociation of the SeCys ligand from the Mo/W active site. Additionally, the oxygen sensitivity of these enzymes must also be understood as it poses an important obstacle for biotechnological applications. Here we present a combined biochemical, spectroscopic, and structural characterization of Desulfovibrio vulgaris FdhAB (DvFdhAB) when exposed to oxygen in the presence of a substrate (formate or CO2). This study reveals that O2 inactivation is promoted by the presence of either substrate and involves forming a different species in the active site, captured in the crystal structures, where the SeCys ligand is displaced from tungsten coordination and replaced by a dioxygen or peroxide molecule. This form was reproducibly obtained and supports the conclusion that, although W-DvFdhAB can catalyse the oxidation of formate in the presence of oxygen for some minutes, it gets irreversibly inactivated after prolonged O2 exposure in the presence of either substrate.

Fernandes, IS, Antunes D, Martins R, Mendes MJ, Reis-Machado AS.  2024.  Solar fuels design: Porous cathodes modeling for electrochemical carbon dioxide reduction in aqueous electrolytes. Helyon. 10(4)
Oliveira, {BB }, Fernandes {AR}, Baptista {PV}.  2024.  Shrinking Cancer Research Barriers: Crafting Accessible Tumor-on-Chip Device for Gene Silencing Assays. Advanced Engineering Materials. : John Wiley & Sons, Ltd. Abstract

Tumor-on-chip (ToC) is crucial to bridge the gap between traditional cell culture experiments and in vivo models, allowing to recreate an in vivo-like microenvironment in cancer research. ToC use microfluidics to provide fine-tune control over environmental factors, high-throughput screening, and reduce requirements of samples and reagents. However, creating these microfluidic devices requires skilled researchers and dedicated manufacturing equipment, making widespread adoption cumbersome and difficult. To address some bottlenecks and improve accessibility to ToC technology, innovative materials and fabrication processes are required. Polystyrene (PS) is a promising material for microfluidics due to its biocompatibility, affordability, and optical transparency. Herein, a fabrication process based on direct laser writing on thermosensitive PS, allowing the swift and economical crafting of devices with easy pattern alterations, is presented. For the first time, a device for cell culture fabricated only by PS is presented, allowing customizing and optimization for efficient cell culture approaches. These biochips support 2D and 3D cultures with comparable viability and proliferation kinetics to traditional 96-well plates. The data show that gene and protein silencing efficiencies remain consistent across both chip and plate-based cultures, either 2D culture or 3D spheroid format. Although simple, this approach might facilitate the use of customized chip-based cancer models.

2023
Silva, AL, Fino I, Ferreira LM, Branco PS.  2023.  Synthesis of 2-(5-(2-Aminopropyl)-2-hydroxyphenyl)acetic Acid, a Metabolite of the Drug 5-APB, JUN. MOLBANK. 2023, Number 2 Abstract

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Trovão, F, Correia VG, Lourenço FM, Ribeiro DO, Carvalho AL, Palma AS, Pinheiro BA.  2023.  The structure of a Bacteroides thetaiotamicron carbohydrate-binding module provides new insight into the recognition of complex pectic polysaccharides by the human microbiome, 2023. :100084. AbstractWebsite

TheBacteroides thetaiotaomicronhas developed a consortium of enzymes capable of overcoming steric constraints and degrading, in a sequential manner, the complex rhamnogalacturonan II (RG-II) polysaccharide. BT0996 protein acts in the initial stages of the RGII depolymerisation, where its two catalytic modules remove the terminal monosaccharides from RG-II side chains A and B. BT0996 is modular and has three putative carbohydrate-binding modules (CBMs) for which the roles in the RG-II degradation are unknown. Here, we present the characterisation of themoduleat the C-terminal domain, which we designated BT0996C. The high-resolution structure obtained by X-ray crystallography reveals that the protein displays a typical β-sandwich fold with structural similarity to CBMs assigned to families 6 and 35. The distinctive features are: 1) the presence of several charged residues at the BT0996-C surface creating a large, broad positive lysine-rich patch that encompasses the putative binding site; and 2) the absence of the highly conserved binding-site signatures observed in CBMs from families 6 and 35, such as region A tryptophan and region C asparagine. These findings hint at a binding mode of BT0996-C not yet observed in its homologues. In line with this, carbohydrate microarrays and microscale thermophoresis show the ability of BT0996-C to bind α1-4-linked polygalacturonic acid, and that electrostatic interactions are essential for the recognition of the anionic polysaccharide. The results support the hypothesis that BT0996-C may have evolved to potentiate the action of BT0996 catalytic modules on the complex structure of RG-II by binding to the polygalacturonic acid backbone sequence.

Duarte, M, Alves VD, Correia M, Caseiro C, Ferreira LMA, Romão MJ, Carvalho AL, Najmudin S, Bayer EA, Fontes CMGA, Bule P.  2023.  Structure-function studies can improve binding affinity of cohesin-dockerin interactions for multi-protein assemblies, 2023. 224:55-67. AbstractWebsite

The cellulosome is an elaborate multi-enzyme structure secreted by many anaerobic microorganisms for the efficient degradation of lignocellulosic substrates. It is composed of multiple catalytic and non-catalytic components that are assembled through high-affinity protein-protein interactions between the enzyme-borne dockerin (Doc) modules and the repeated cohesin (Coh) modules present in primary scaffoldins. In some cellulosomes, primary scaffoldins can interact with adaptor and cell-anchoring scaffoldins to create structures of increasing complexity. The cellulosomal system of the ruminal bacterium, Ruminococcus flavefaciens, is one of the most intricate described to date. An unprecedent number of different Doc specificities results in an elaborate architecture, assembled exclusively through single-binding-mode type-III Coh-Doc interactions. However, a set of type-III Docs exhibits certain features associated with the classic dual-binding mode Coh-Doc interaction. Here, the structure of the adaptor scaffoldin-borne ScaH Doc in complex with the Coh from anchoring scaffoldin ScaE is described. This complex, unlike previously described type-III interactions in R. flavefaciens, was found to interact in a dual-binding mode. The key residues determining Coh recognition were also identified. This information was used to perform structure-informed protein engineering to change the electrostatic profile of the binding surface and to improve the affinity between the two modules. The results show that the nature of the residues in the ligand-binding surface plays a major role in Coh recognition and that Coh-Doc affinity can be manipulated through rational design, a key feature for the creation of designer cellulosomes or other affinity-based technologies using tailored Coh-Doc interactions.

Garcarova, I, Valusova E, Shlapa Y, Belous A, Musatov A, Siposova K.  2023.  Surface-modified cerium dioxide nanoparticles with improved anti-amyloid and preserved nanozymatic activity. Colloids and Surfaces B: Biointerfaces. 227(113356)
Nóbrega, CS, Carvalho AL, Romão MJ, Pauleta SR.  2023.  Structural Characterization of Neisseria gonorrhoeae Bacterial Peroxidase—Insights into the Catalytic Cycle of Bacterial Peroxidases. International Journal of Molecular Sciences. 24, Number 7 AbstractWebsite

Neisseria gonorrhoeae is an obligate human pathogenic bacterium responsible for gonorrhea, a sexually transmitted disease. The bacterial peroxidase, an enzyme present in the periplasm of this bacterium, detoxifies the cells against hydrogen peroxide and constitutes one of the primary defenses against exogenous and endogenous oxidative stress in this organism. The 38 kDa heterologously produced bacterial peroxidase was crystallized in the mixed-valence state, the active state, at pH 6.0, and the crystals were soaked with azide, producing the first azide-inhibited structure of this family of enzymes. The enzyme binds exogenous ligands such as cyanide and azide, which also inhibit the catalytic activity by coordinating the P heme iron, the active site, and competing with its substrate, hydrogen peroxide. The inhibition constants were estimated to be 0.4 ± 0.1 µM and 41 ± 5 mM for cyanide and azide, respectively. Imidazole also binds and inhibits the enzyme in a more complex mechanism by binding to P and E hemes, which changes the reduction potential of the latest heme. Based on the structures now reported, the catalytic cycle of bacterial peroxidases is revisited. The inhibition studies and the crystal structure of the inhibited enzyme comprise the first platform to search and develop inhibitors that target this enzyme as a possible new strategy against N. gonorrhoeae.

2022
Moreira, IP, Esteves C, Palma SICJ, Ramou E, Carvalho ALM, Roque ACA.  2022.  Synergy between silk fibroin and ionic liquids for active gas-sensing materials, jun. Materials Today Bio. 15:100290.: Elsevier AbstractPDFWebsite

Silk fibroin is a biobased material with excellent biocompatibility and mechanical properties, but its use in bioelectronics is hampered by the difficult dissolution and low intrinsic conductivity. Some ionic liquids are known to dissolve fibroin but removed after fibroin processing. However, ionic liquids and fibroin can cooperatively give rise to functional materials, and there are untapped opportunities in this combination. The dissolution of fibroin, followed by gelation, in designer ionic liquids from the imidazolium chloride family with varied alkyl chain lengths (2–10 carbons) is shown here. The alkyl chain length of the anion has a large impact on fibroin secondary structure which adopts unconventional arrangements, yielding robust gels with distinct hierarchical organization. Furthermore, and due to their remarkable air-stability and ionic conductivity, fibroin ionogels are exploited as active electrical gas sensors in an electronic nose revealing the unravelled possibilities of fibroin in soft and flexible electronics.

Marques, AC.  2022.  Supercapacitors for a wearable All-FIBRE device, Feb28-Mar2. 3nd Condensed Matter Physics National Conference. , Faculdade de Ciências da Universidade de Lisboa (FCUL): Portuguese Society of Physics
Twilley, D, Meyer D, Langhansova L, Mcgaw {LJ }, Madikizela B, Roma-Rodrigues C, Baptista, {P. V}, Fernandes {AR }, Lall N.  2022.  Short Lecture 4 {"}Evaluation of antiproliferative and anti-angiogenic activity of an ethanolic extract of Helichrysum odoratissimum (L.) Sweet against skin cancer{"}, dec. Planta Medica. 88:1398–1398., Number 15: Georg Thieme Verlag Abstract
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Antão, J, Barreto J, Lourenço JM.  2022.  A Study of Latency-Aware Data-Placement in Heterogeneous (PMEM) Memory Systems, 8-9 Sep.. Atas do INForum 2022. , Instituto Politécnico da Guardaabl22_-_pmem.pdf
Firmino, R, Carlos E, Pinto JV, Deuermeier J, Martins R, Fortunato E, Barquinha P, Branquinho R.  2022.  Solution Combustion Synthesis of Hafnium-Doped Indium Oxide Thin Films for Transparent Conductors, 2022/06//. Nanomaterials. 12(13):2167-2167. AbstractWebsite

Indium oxide (In2O3)-based transparent conducting oxides (TCOs) have been widely used and studied for a variety of applications, such as optoelectronic devices. However, some of the more promising dopants (zirconium, hafnium, and tantalum) for this oxide have not received much attention, as studies have mainly focused on tin and zinc, and even fewer have been explored by solution processes. This work focuses on developing solution-combustion-processed hafnium (Hf)-doped In2O3 thin films and evaluating different annealing parameters on TCO’s properties using a low environmental impact solvent. Optimized TCOs were achieved for 0.5 M% Hf-doped In2O3 when produced at 400 °C, showing high transparency in the visible range of the spectrum, a bulk resistivity of 5.73 × 10−2 Ω.cm, a mobility of 6.65 cm2/V.s, and a carrier concentration of 1.72 × 1019 cm−3. Then, these results were improved by using rapid thermal annealing (RTA) for 10 min at 600 °C, reaching a bulk resistivity of 3.95 × 10 −3 Ω.cm, a mobility of 21 cm2/V.s, and a carrier concentration of 7.98 × 1019 cm−3, in air. The present work brings solution-based TCOs a step closer to low-cost optoelectronic applications.

Oliveira, AR, Mota C, Klymanska K, Biaso F, Romão MJ, Guigliarelli B, Pereira IC.  2022.  Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis, 2022. ACS Chemical BiologyACS Chemical Biology. 17(7):1901-1909.: American Chemical Society AbstractWebsite

Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.

Santos, AFM, Cruz C, Godinho MH, Dionísio M, Figueirinhas JL, Branco LC.  2022.  Synthesis and characterisation of ionic liquid crystals based on substituted pyridinium cations, 2022. Liquid CrystalsLiquid Crystals. :1-13.: Taylor & Francis AbstractWebsite
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M.J., N, G.N. V, A. S‐A, J.J.G. M, C. R, Sousa JP, C.M. C.  2022.  Screen‐Printed Electrodes Testing for Detection of Potential Stress Biomarkers in Sweat. Electrocatalysis. 13:299–305.
Isufi, B, Almeida A, Marreiros R, Ramos A, Lúcio V.  2022.  Slab – column connection punching and ductility improvement methods for seismic response of buildings with flat slabs. Structural Concrete. 23:1385–1398.Website
Sarnatskaya, V, Shlapa Y, Lykhova A, Brieieva O, Prokopenko I, Sidorenko A, Solopan S, Kolesnik D, Belous A, Nikolaev V.  2022.  Structure and Biological Activity of Particles Produced from Highly Activated Carbon Adsorbent. Heliyon. 8(3)
Maiti, BK, Maia LB, Moura JJG.  2022.  Sulfide and transition metals - A partnership for life. J Inorg Biochem. 227:111687.Website