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2013
Silva, R, Folgosa F, Soares P, Pereira AS, Garcia R, Gestal-Otero JJ, Tavares P, Gomes da Silva MDR.  2013.  Occupational cosmic radiation exposure in Portuguese airline pilots: study of a possible correlation with oxidative biological markers., Jun. Radiation and environmental biophysics. 52:211-220., Number 2 AbstractWebsite

Several studies have sought to understand the health effects of occupational exposure to cosmic radiation. However, only few biologic markers or associations with disease outcomes have so far been identified. In the present study, 22 long- and 26 medium-haul male Portuguese airline pilots and 36 factory workers who did not fly regularly were investigated. The two groups were comparable in age and diet, were non-smokers, never treated with ionizing radiation and other factors. Cosmic radiation exposure in pilots was quantified based on direct monitoring of 51 flights within Europe, and from Europe to North and South America, and to Africa. Indirect dose estimates in pilots were performed based on the SIEVERT (Système informatisé d'évaluation par vol de l'exposition au rayonnement cosmique dans les transports aériens) software for 6,039 medium- and 1,366 long-haul flights. Medium-haul pilots had a higher cosmic radiation dose rate than long-haul pilots, that is, 3.3 ± 0.2 μSv/h and 2.7 ± 0.3 μSv/h, respectively. Biological tests for oxidative stress on blood and urine, as appropriate, at two time periods separated by 1 year, included measurements of antioxidant capacity, total protein, ferritin, hemoglobin, creatinine and 8-hydroxy-2-deoxyguanosine (8OHdG). Principal components analysis was used to discriminate between the exposed and unexposed groups based on all the biological tests. According to this analysis, creatinine and 8OHdG levels were different for the pilots and the unexposed group, but no distinctions could be made among the medium- and the long-haul pilots. While hemoglobin levels seem to be comparable between the studied groups, they were directly correlated with ferritin values, which were lower for the airline pilots.

Conde, J, Ambrosone A, Hernandez Y, Marchesano V, Tian F, {Ricardo Ibarra} M, Baptista {PV}, Tortiglione C, {de la Fuente} {JM }.  2013.  Designing gold nanoparticles for in vivo gene silencing as a new therapeutic tool, dec. Human Gene Therapy. 24:A24–A24., Number 12: Mary Ann Leibert Abstract
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Baptista, AC, Ferreira I, Borges JP.  2013.  Cellulose-based composite systems for biomedical applications. Biomass based Biocomposites. (Thakur, Vijay Kumar, Singha, A.S., Eds.).:47-60., U.K.: Smithers Rapra Technology
Ruivo, A, Almeida T, Quintas F, Wiley R, Troeira M, Paulino N, Laia CAT, Queiroz CA, de Matos PA.  2013.  Colours of Luminescent Glasses for Artworks. Proceedings of 12th International AIC Colour Congress. :885-888., Newcastle Gateshead, UK
Thapper, A, Rizzi AC, Brondino CD, Wedd AG, Pais RJ, Maiti BK, Moura I, Pauleta SR, Moura JJG.  2013.  Copper-substituted forms of the wild type and C42A variant of rubredoxin. J Inorg Biochem. 127:232-237.
Martin, KE, Tian Y, Busani T, Medforth CJ, Franco R, van Swol KF, Shelnutt J.  2013.  Effect of pH on the Structure and Composition of Porphyrin Binary Ionic Solids: ZnTPPS/SnTMePyP Nanomaterials. Chemistry of Materials. (25):441-447.
C, N, M.P.F. G, M. E, B.A. S, R.C.C. M, L. R, T. M.  2013.  Effects of ultraviolet excitation on the spectroscopic properties of Sm3+ and Tb3+ doped aluminophosphate glasses. Optical Materials. 35(12):2382-2388. AbstractWebsite

Li2O–BaO–Al2O3–La2O3–P2O5 glasses optically activated with rare earth ions with the 4f5, and 4f8 electronic configuration (Sm3+ and Tb3+, respectively) were analyzed by Raman spectroscopy, absorption, excitation photoluminescence, decay curves and temperature dependent photoluminescence. The spectroscopic characteristics of the as-prepared and heat treated samples at temperatures below and above Tg were studied as well as their room temperature photometric properties under ultraviolet excitation. All the doped glasses exhibit typical signatures of the lanthanides in their trivalent charge state. For the samarium doped glass heat treated at 250 °C (lower than Tg) the Sm2+ luminescence was also observed. The analysis of the luminescence efficiency was performed in the interval range of 14 K to room temperature, where the integrated intensity of the luminescence was found to decrease for the Sm3+ and Tb3+ ions in the studied temperature range. Luminescence decay curves were found to be non-exponential for the 4G5/2 → 6H7/2 and5D3 → 7F4 transitions of the Sm3+ and Tb3+ ions, respectively. The results strongly suggest the occurrence of energy transfer processes through cross relaxation phenomena, mediated by dipole–dipole interaction in all the studied samples. The decay of the 5D4 → 7F5 emission of the Tb3+ ions was found to be single exponential with a time constant of ∼3.1 ms. Based on the spectroscopic characteristics, models for recombination processes are proposed. The room temperature luminance photometric properties with ultraviolet excitation show that the samarium doped glasses have much lower luminance intensity (around 0.3 Cd/m2) when compared with the 6–7 Cd/m2 observed for the terbium doped ones.

Dantas, JM, Tomaz DM, Morgado L, Salgueiro CA.  2013.  Functional characterization of PccH, a key cytochrome for electron transfer from electrodes to the bacterium Geobacter sulfurreducens. FEBS Letters. 587(16):2662-2668. AbstractWebsite

The cytochrome PccH from Geobacter sulfurreducens (Gs) plays a crucial role in current-consuming fumarate-reducing biofilms. Deletion of pccH gene inhibited completely electron transfer from electrodes toward Gs cells. The pccH gene was cloned and the protein heterologously expressed in Escherichia coli. Complementary biophysical techniques including CD, UV-visible and NMR spectroscopy were used to characterize PccH. This cytochrome contains one low-spin c-type heme with His-Met axial coordination and unusual low-reduction potential. This reduction potential is pH-dependent, within the Gs physiological pH range, and is discussed within the context of the electron transfer mechanisms from electrodes to Gs cells.

Gromicho, M, Magalhaes M, Torres F, Dinis J, Fernandes AR, Rendeiro P, Tavares P, Laires A, Rueff J, Rodrigues AS.  2013.  Instability of mRNA expression signatures of drug transporters in chronic myeloid leukemia patients resistant to imatinib. Oncol Rep. 29(2):741-50.13gromichoor.pdf
Baptista, AC, Soares PIP, Ferreira I, Borges JP.  2013.  Nanofibers and nanoparticles in biomedical applications. Bioengineered Nanomaterials. (Tiwari, Atul, Tiwari, Ashutosh, Eds.)., USA: CRC Press (Taylor & Francis Group)
Teixiera, SS, Dias CJ, Dionísio M, Costa LC.  2013.  New method to analyze dielectric relaxation processes: a study on polymethacrylate series. Polymer International. 62:1744-1749.Website
Dantas, JM, Morgado L, Pokkuluri PR, Turner DL, Salgueiro CA.  2013.  Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1827(4):484-492. AbstractWebsite

Extracellular electron transfer is one of the physiological hallmarks of Geobacteraceae. Most of the Geobacter species encode for more than 100 c-type cytochromes which are, in general, poorly conserved between individual species. An exception to this is the PpcA family of periplasmic triheme c-type cytochromes, which are the most abundant proteins in these bacteria. The functional characterization of PpcA showed that it has the necessary properties to couple electron/proton transfer, a fundamental step for ATP synthesis. The detailed thermodynamic characterization of a PpcA mutant, in which the strictly conserved residue phenylalanine 15 was replaced by leucine, showed that the global redox network of cooperativities among heme groups is altered, preventing the mutant from performing a concerted electron/proton transfer. In this work, we determined the solution structure of PpcA F15L mutant in the fully reduced state using NMR spectroscopy by producing 15N-labeled protein. In addition, pH-dependent conformational changes were mapped onto the structure. The mutant structure obtained is well defined, with an average pairwise root-mean-square deviation of 0.36 Å for the backbone atoms and 1.14 Å for all heavy atoms. Comparison between the mutant and wild-type structures elucidated the contribution of phenylalanine 15 in the modulation of the functional properties of PpcA.

Almeida, RA, Turano P, Moura I, Moura JJG, Pauleta SR.  2013.  Superoxide reductase: different interaction modes with its two redox partners. ChemBioChem. 14:1858–1866.
Thorsing, M, Klitgaard JK, Atilano ML, Skov MN, Kolmos HJ, Filipe SR, Kallipolitis BH.  2013.  Thioridazine induces major changes in global gene expression and cell wall composition in methicillin-resistant Staphylococcus aureus USA300. PLoS One. 8:e64518.
Bahubalindruni, Ganga, Tavares, Vitor Grade, Barquinha, Duarte, Candido, de Oliveira, Pedro Guedes, Martins, Fortunato E.  2013.  Transparent Current Mirrors With a-GIZO TFTs: Neural Modeling, Simulation and Fabrication. Journal of Display Technology. 9(12):1001-1006.
Lipinska, ME, Teixeira DMD, Laia CAT, Silva AMG, Rebelo SLH, Freire C.  2013.  beta-Functionalized zinc(II)aminoporphyrins by direct catalytic hydrogenation. Tetrahedron Letters. 54:110-113., Number 1 AbstractWebsite
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Gawande, MB, Branco PS, Nogueira ID, Ghumman ACA, Bundaleski N, Santos A, Teodoro OMND, Luque R.  2013.  Catalytic applications of a versatile magnetically separable Fe-Mo (Nanocat-Fe-Mo) nanocatalyst. GREEN CHEMISTRY. 15:682-689., Number 3 Abstract
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Oliveira, FS, Pereiro AB, Araujo JM, Bernardes CE, Canongia Lopes JN, Todorovic S, Feio G, Almeida PL, Rebelo LP, Marrucho IM.  2013.  High ionicity ionic liquids (HIILs): comparing the effect of ethylsulfonate and ethylsulfate anions. Phys Chem Chem Phys. 15:18138-47., Number 41 AbstractWebsite

The subject of ionicity has been extensively discussed in the last decade, due to the importance of understanding the thermodynamic and thermophysical behaviour of ionic liquids. In our previous work, we established that ionic liquids' ionicity could be improved by the dissolution of simple inorganic salts in their milieu. In this work, a comparison between the thermophysical properties of two binary systems of ionic liquid + inorganic salt is presented. The effect of the ammonium thiocyanate salt on the ionicity of two similar ionic liquids, 1-ethyl-3-methylimidazolium ethylsulfonate and ethylsulfate, is investigated in terms of the related thermophysical properties, such as density, viscosity and ionic conductivity in the temperature range 298.15-323.15 K. In addition, spectroscopic (NMR and Raman) and molecular dynamic studies were conducted in order to better understand the interactions that occur at a molecular level. The obtained results reveal that although the two anions of the ionic liquid exhibit similar chemical structures, the presence of one additional oxygen in the ethylsulfate anion has a major impact on the thermophysical properties of the studied systems.

Mahro, M, Bras NF, Cerqueira NMFSA, Teutloff C, Coelho C, Romao MJ, Leimkuehler S.  2013.  Identification of Crucial Amino Acids in Mouse Aldehyde Oxidase 3 That Determine Substrate Specificity. Plos One. 8, Number 12 AbstractWebsite
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Mehtab, S, Goncalves G, Roy S, Tomaz AI, Santos-Silva T, Santos MFA, Romao MJ, Jakusch T, Kiss T, Pessoa JC.  2013.  Interaction of vanadium(IV) with human serum apo-transferrin. Journal of Inorganic Biochemistry. 121:187-195. AbstractWebsite
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Gawande, MB, Bonifacio VDB, Varma RS, Nogueira ID, Bundaleski N, Ghumman ACA, Teodoro OMND, Branco PS.  2013.  Magnetically recyclable magnetite-ceria (Nanocat-Fe-Ce) nanocatalyst - applications in multicomponent reactions under benign conditions. GREEN CHEMISTRY. 15:1226-1231., Number 5 Abstract
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Gawande, MB, Rathi AK, Branco PS, Potewar TM, Velhinho A, Nogueira ID, Tolstogouzov A, Ghumman ACA, Teodoro OMND.  2013.  Nano-MgO-ZrO2 mixed metal oxides: characterization by SIMS and application in the reduction of carbonyl compounds and in multicomponent reactions. RSC ADVANCES. 3:3611-3617., Number 11 Abstract
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Kasthurirangan, S, Saha JK, Agnihotri AN, Bhattacharyya S, Misra D, Kumar A, Mukherjee PK, Santos JP, Costa AM, Indelicato P, Mukherjee TK, Tribedi LC.  2013.  Observation of 2p3 d (1Po)→ 1s3d (1De) Radiative Transition in He-like Si, S, and Cl Ions. Physical Review Letters. 111:243201. AbstractWebsite
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Verma, AK, Goyal A, Freire F, Bule P, Venditto I, Bras JLA, Santos H, Cardoso V, Bonifacio C, Thompson A, Romao MJ, Prates JAM, Ferreira LMA, Fontes CMGA, Najmudin S.  2013.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of glucuronoxylan xylanohydrolase (Xyn30A) from Clostridium thermocellum. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 69:1440-1442. AbstractWebsite
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Palma, AS, Pinheiro B, Liu Y, Takeda Y, Chai W, Ito Y, Romao MJ, Carvalho AL, Feizi T.  2013.  The Structural Basis of the Recognition of Di-glucosylated N-glycans by the ER Lectin Malectin. Glycobiology. 23:1368-1369., Number 11 AbstractWebsite
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