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2014
Otrelo-Cardoso, AR, da Silva Correia MA, Schwuchow V, Svergun DI, Romao MJ, Leimkuehler S, Santos-Silva T.  2014.  Structural Data on the Periplasmic Aldehyde Oxidoreductase PaoABC from Escherichia coli: SAXS and Preliminary X-ray Crystallography Analysis. International Journal of Molecular Sciences. 15:2223-2236., Number 2 AbstractWebsite
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Couto, RM, Lourenco C, Simoes PC, Branco LC.  2014.  Task specific ionic liquids as polarity shifting additives of common organic solvents. New Journal of Chemistry. 38:5559-5565., Number 11 AbstractWebsite
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Boavida, N, Moniz A, Laranja M.  2014.  Towards an assessment of the Portuguese e-mobility case; The Mobi-E. Technology assessment and policy areas of great transitions. (Michalek, T., Hebakova, L., Hennen, L., Scherz, C., Nierling, L., Hahn, J., Eds.).:263-269., Prague: Technology Centre ASCR Abstract
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Silva, JP, Araujo D, Jorge Parola A, Lima JC, Nabais F, Cardoso N.  2014.  Using Distinctive Colour Signatures to Capture Team Behaviour During Matches. Engineering of Sport 10. 72(James, D., Choppin, S., Allen, T., Wheat, J., Fleming, P., Eds.).:238-242. Abstract
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Santos, MFA, Correia I, Oliveira AR, Garribba E, Pessoa JC, Santos-Silva T.  2014.  Vanadium Complexes as Prospective Therapeutics: Structural Characterization of a VIV Lysozyme Adduct. European Journal of Inorganic Chemistry. :n/a–n/a.: WILEY-VCH Verlag AbstractWebsite

The biological activity of vanadium complexes, namely, as insulin enhancers, is well known. We report a combined X-ray crystallography, electron paramagnetic resonance, and density functional theory study of the interaction of vanadium picolinate complexes with hen egg white lysozyme (HEWL). We show that the VIVO(pic)2 complex covalently binds to the COO– group of the side chain of Asp52 of HEWL. The long VIV=O bond obtained in the X-ray study is explained to be due to reduction of VIV to VIII during exposure of the crystals to the intense X-ray beam.

Costa, MN, Veigas B, Jacob JM, Santos DS, Gomes J, Baptista PV, Martins R, Inácio J, Fortunato E.  2014.  {A low cost, safe, disposable, rapid and self-sustainable paper-based platform for diagnostic testing: lab-on-paper.}. Nanotechnology. 25:094006., Number 9 AbstractWebsite

There is a strong interest in the use of biopolymers in the electronic and biomedical industries, mainly towards low-cost applications. The possibility of developing entirely new kinds of products based on cellulose is of current interest, in order to enhance and to add new functionalities to conventional paper-based products. We present our results towards the development of paper-based microfluidics for molecular diagnostic testing. Paper properties were evaluated and compared to nitrocellulose, the most commonly used material in lateral flow and other rapid tests. Focusing on the use of paper as a substrate for microfluidic applications, through an eco-friendly wax-printing technology, we present three main and distinct colorimetric approaches: (i) enzymatic reactions (glucose detection); (ii) immunoassays (antibodies anti-Leishmania detection); (iii) nucleic acid sequence identification (Mycobacterium tuberculosis complex detection). Colorimetric glucose quantification was achieved through enzymatic reactions performed within specific zones of the paper-based device. The colouration achieved increased with growing glucose concentration and was highly homogeneous, covering all the surface of the paper reaction zones in a 3D sensor format. These devices showed a major advantage when compared to the 2D lateral flow glucose sensors, where some carryover of the coloured products usually occurs. The detection of anti-Leishmania antibodies in canine sera was conceptually achieved using a paper-based 96-well enzyme-linked immunosorbent assay format. However, optimization is still needed for this test, regarding the efficiency of the immobilization of antigens on the cellulose fibres. The detection of Mycobacterium tuberculosis nucleic acids integrated with a non-cross-linking gold nanoprobe detection scheme was also achieved in a wax-printed 384-well paper-based microplate, by the hybridization with a species-specific probe. The obtained results with the above-mentioned proof-of-concept sensors are thus promising towards the future development of simple and cost-effective paper-based diagnostic devices.

Branquinho, R, Salgueiro D, Santos L??dia, Barquinha P, Pereira L??s, Martins R, Fortunato E.  2014.  {Aqueous combustion synthesis of aluminum oxide thin films and application as gate dielectric in GZTO solution-based TFTs}. ACS Applied Materials and Interfaces. 6:19592–19599., Number 22 Abstract

Solution processing has been recently considered as an option when trying to reduce the costs associated with deposition under vacuum. In this context, most of the research efforts have been centered in the development of the semiconductors processes nevertheless the development of the most suitable dielectrics for oxide based transistors is as relevant as the semiconductor layer itself. In this work we explore the solution combustion synthesis and report on a completely new and green route for the preparation of amorphous aluminum oxide thin films; introducing water as solvent. Optimized dielectric layers were obtained for a water based precursor solution with 0.1 M concentration and demonstrated high capacitance, 625 nF cm(-2) at 10 kHz, and a permittivity of 7.1. These thin films were successfully applied as gate dielectric in solution processed gallium-zinc-tin oxide (GZTO) thin film transistors (TFTs) yielding good electrical performance such as subthreshold slope of about 0.3 V dec(-1) and mobility above 1.3 cm(2) V(-1) s(-1).

Liu, A, Liu GX, Zhu HH, Xu F, Fortunato E, Martins R, Shan FK.  2014.  {Fully Solution-Processed Low-Voltage Aqueous In2O3 Thin-Film Transistors Using an Ultrathin ZrOx Dielectric}. ACS Applied Materials {&} Interfaces. 6:17364–17369., Number 20 AbstractWebsite

We reported here ?aqueous-route? fabrication of In2O3 thin-film transistors (TFTs) using an ultrathin solution-processed ZrOx dielectric thin film. The formation and properties of In2O3 thin films under various annealing temperatures were intensively examined by thermogravimetric analysis, Fourier transform infrared spectroscopy, and atomic force microscopy. The solution-processed ZrOx thin film followed by sequential UV/ozone treatment and low-temperature thermal-annealing processes showed an amorphous structure, a low leakage-current density (?1 ? 10?9 A/cm2 at 2 MV/cm), and a high breakdown electric field (?7.2 MV/cm). On the basis of its implementation as the gate insulator, the In2O3 TFTs based on ZrOx annealed at 250 °C exhibit an on/off current ratio larger than 107, a field-effect mobility of 23.6 cm2/V·s, a subthreshold swing of 90 mV/decade, a threshold voltage of 0.13 V, and high stability. These promising properties were obtained at a low operating voltage of 1.5 V. These results suggest that ?aqueous-route? In2O3 TFTs based on a solution-processed ZrOx dielectric could potentially be used for low-cost, low-temperature-processing, high-performance, and flexible devices.

Liu, GX, Liu A, Shan FK, Meng Y, Shin BC, Fortunato E, Martins R.  2014.  {High-performance fully amorphous bilayer metal-oxide thin film transistors using ultra-thin solution-processed ZrOx dielectric}. Applied Physics Letters. 105:113509., Number 11 AbstractWebsite

In this study, we report high-performance amorphous In2O3/InZnO bilayer metal-oxide (BMO) thin-film transistor (TFT) using an ultra-thin solution-processed amorphous ZrOx dielectric. A thin layer of In2O3 offers a higher carrier concentration, thereby maximizing the charge accumulation and yielding high carrier mobility. A thick amorphous layer of InZnO controls the charge conductance resulting in low off-state current and suitable threshold voltage. As a consequence, the BMO TFT showed higher filed-effect mobility (37.9 cm2/V s) than single-layer InZnO TFT (7.6 cm2/V s). Apart from that we obtain an on/off current ratio of 109, a subthreshold swing voltage of 120 mV/decade, and a voltage shift ≤ 0.4 V under positive bias stress for 2.5 h, for a gate voltage of 3 V and drain voltage of 1 V. These data demonstrate that the BMO TFT has great potential for a broad range of applications as switching low-power transistors.

Santos, L, Neto JP, Crespo A, Nunes D, Costa N, Fonseca IM, Barquinha P, Pereira LÍ, Silva J, Martins R, Fortunato E.  2014.  {WO3 Nanoparticle-Based Conformable pH Sensor}. ACS Applied Materials {&} Interfaces. 6:12226–12234., Number 15 AbstractWebsite

pH is a vital physiological parameter that can be used for disease diagnosis and treatment as well as in monitoring other biological processes. Metal/metal oxide based pH sensors have several advantages regarding their reliability, miniaturization, and cost-effectiveness, which are critical characteristics for in vivo applications. In this work, WO3 nanoparticles were electrodeposited on flexible substrates over metal electrodes with a sensing area of 1 mm2. These sensors show a sensitivity of ?56.7 ± 1.3 mV/pH, in a wide pH range of 9 to 5. A proof of concept is also demonstrated using a flexible reference electrode in solid electrolyte with a curved surface. A good balance between the performance parameters (sensitivity), the production costs, and simplicity of the sensors was accomplished, as required for wearable biomedical devices.

2013
Amaro, P, Schlesser S, Guerra M, Le Bigot E, Santos JP, Szabo CI, Gumberidze A, Indelicato P.  2013.  Absolute measurements and simulations of x-ray line energies of highly charged ions with a double-crystal spectrometer, Sep 23. Physica Scripta. T156:014104. AbstractWebsite
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Szabo, CI, Amaro P, Guerra M, Santos JP, Gumberidze A, Attard J, Indelicato P.  2013.  Ion temperature and x-ray line width measurements of highly charged argon ions in an ECR ion source, Sep 23. Physica Scripta. T156:014077. AbstractWebsite
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Santos, JP, Marques JP, Costa AM, Martins MC, Indelicato P, Parente F.  2013.  Transition probability values of the 1s 22s3p 3P 0level in Be-like ions, Sep 23. Physica Scripta. T156:014020. AbstractWebsite
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Sousa, DG, Ferreira C, Lourenço JM.  2013.  Prevenção de Violações de Atomicidade usando Contractos, sep. Proceedings of INForum Simpósio de Informática. :190–201., Lisbon, Portugal: Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Abstract2013-inforum-ds.pdf

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Martins, HRL, Soares J, Lourenço JM, Preguiça N.  2013.  Replicação Multi-nível de Bases de Dados em Memória, sep. Proceedings of INForum Simpósio de Informática. :190–201., Lisbon, Portugal: Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Abstract2013-inforum-hm.pdf

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Bernacka-Wójcik, I, Lopes {PA }, Vaz {AC}, Veigas {BMR}, Wojcik {PJ}, Simões P, Barata D, Fortunato {EMC}, Baptista {PMRV}, Águas {HMB}, de Martins {RFP}.  2013.  Bio-microfluidic platform for gold nanoprobe based DNA detection-application to Mycobacterium tuberculosis, oct. Biosensors & Bioelectronics. 48:87–93.: Elsevier Abstract

We have projected and fabricated a microfluidic platform for DNA sensing that makes use of an optical colorimetric detection method based on gold nanoparticles. The platform was fabricated using replica moulding technology in PDMS patterned by high-aspect-ratio SU-8 moulds. Biochips of various geometries were tested and evaluated in order to find out the most efficient architecture, and the rational for design, microfabrication and detection performance is presented. The best biochip configuration has been successfully applied to the DNA detection of Mycobacterium tuberculosis using only 3 mu l on DNA solution (i.e. 90 ng of target DNA), therefore a 20-fold reduction of reagents volume is obtained when compared with the actual state of the art.

Conde, J, Tian F, Hernández Y, Bao C, Cui D, Janssen {KP}, Ibarra R}{M, Baptista {PV}, Stoeger T, {de la Fuente} {JM }.  2013.  Invivo tumor targeting via nanoparticle-mediated therapeutic siRNA coupled to inflammatory response in lung cancer mouse models, oct. Biomaterials. 34:7744–7753., Number 31: Elsevier Abstract

Up to now, functionalized gold nanoparticles have been optimized as an effective intracellular invitro delivery vehicle for siRNAs to interfere with the expression of specific genes by selective targeting, and provide protection against nucleases. Few examples however of suchlike invivo applications have been described so far. In this study, we report the use of siRNA/RGD gold nanoparticles capable of targeting tumor cells in a lung cancer syngeneic orthotopic murine model. Therapeutic RGD-nanoparticle treatment resulted in successful targeting evident from significant c-myc oncogene down-regulation followed by tumor growth inhibition and prolonged survival of lung tumor bearing mice, possibly via αvβ3 integrin interaction. Our results suggest that RGD gold nanoparticles-mediated delivery of siRNA by intratracheal instillation in mice leads to successful suppression of tumor cell proliferation and respective tumor size reduction. These results reiterate the capability of functionalized gold nanoparticles for targeted delivery of siRNA to cancer cells towards effective silencing of the specific target oncogene. What is more, we demonstrate that the gold-nanoconjugates trigger a complex inflammatory and immune response that might promote the therapeutic effect of the RNAi to reduce tumor size with low doses of siRNA.

Guerra, M, Pinto RM, Santos JP, Paiva ACS.  2013.  Towards the assignment of the REMPI spectrum of Ph 2O using CIS and TD-DFT methods, May 09. Molecular Physics. 111:3311-3319., Number 21 AbstractWebsite
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Sampaio, JM, Parente F, Indelicato P, Marques JP.  2013.  Relativistic calculations of M-shell decay rates and yields in Zn, Cd and Hg, Mar 26. Journal of Physics B: Atomic, Molecular and Optical Physics. 46:065001., Number 6 AbstractWebsite
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Boavida, N, Baumann M, Moniz AB, Schippl J, Reichenbach M, Weil M.  2013.  {Technology transition towards electric mobility - technology assessment as a tool for policy design}, Mar. , Number 04/2013: Universidade Nova de Lisboa, IET/CICS.NOVA-Interdisciplinary Centre on Social Sciences, Faculty of Science and Technology Abstract

The paper aims to understand the degree of transition towards e-mobility. The assumption is that the degree of convergence between actors of each system (batteries, vehicles, grid, policies, business models and consumers) is an indicator of changes in the present socio-technical regime. After an introduction to the socio-technical transition towards e-mobility, the paper presents and discusses three technology assessment approaches to several projects related to technology, society and politics. There are several thematic crossovers between all projects presented leading to a synergetic technology assessment. This output results from the overlapping areas between the cases and can be used to first assess the extent of changes in the present socio-technical regime, as well as to extract standards and regulations, acceptance/risk analyses and behaviour changes that could be significant in the context of a transition towards electric mobility.

Silva, R, Folgosa F, Soares P, Pereira AS, Garcia R, Gestal-Otero JJ, Tavares P, Gomes da Silva MDR.  2013.  Occupational cosmic radiation exposure in Portuguese airline pilots: study of a possible correlation with oxidative biological markers., Jun. Radiation and environmental biophysics. 52:211-220., Number 2 AbstractWebsite

Several studies have sought to understand the health effects of occupational exposure to cosmic radiation. However, only few biologic markers or associations with disease outcomes have so far been identified. In the present study, 22 long- and 26 medium-haul male Portuguese airline pilots and 36 factory workers who did not fly regularly were investigated. The two groups were comparable in age and diet, were non-smokers, never treated with ionizing radiation and other factors. Cosmic radiation exposure in pilots was quantified based on direct monitoring of 51 flights within Europe, and from Europe to North and South America, and to Africa. Indirect dose estimates in pilots were performed based on the SIEVERT (Système informatisé d'évaluation par vol de l'exposition au rayonnement cosmique dans les transports aériens) software for 6,039 medium- and 1,366 long-haul flights. Medium-haul pilots had a higher cosmic radiation dose rate than long-haul pilots, that is, 3.3 ± 0.2 μSv/h and 2.7 ± 0.3 μSv/h, respectively. Biological tests for oxidative stress on blood and urine, as appropriate, at two time periods separated by 1 year, included measurements of antioxidant capacity, total protein, ferritin, hemoglobin, creatinine and 8-hydroxy-2-deoxyguanosine (8OHdG). Principal components analysis was used to discriminate between the exposed and unexposed groups based on all the biological tests. According to this analysis, creatinine and 8OHdG levels were different for the pilots and the unexposed group, but no distinctions could be made among the medium- and the long-haul pilots. While hemoglobin levels seem to be comparable between the studied groups, they were directly correlated with ferritin values, which were lower for the airline pilots.

Moniz, AB, Boavida N, Baumann M, Schippl J, Reichenbach M, Weil M.  2013.  Technology transition towards electric mobility - technology assessment as a tool for policy design, Jun. Colloquium Gerpisa 2013. , Paris: Université d'Evry Abstract

The paper aims to understand the degree of transition towards e-mobility. The assumption is that the degree of convergence between actors of each system (batteries, vehicles, grid, policies, business models and consumers) is an indicator of changes in the present socio-technical regime. After an introduction to the socio-technical transition towards e-mobility, the paper presents and discusses three technology assessment approaches to several projects related to technology, society and politics. There are several thematic crossovers between all projects presented leading to a synergetic technology assessment. This output results from the overlapping areas between the cases and can be used to first assess the extent of changes in the present socio-technical regime, as well as to extract standards and regulations, acceptance/risk analyses and behaviour changes that could be significant in the context of a transition towards electric mobility.

Vilas-Boasa, V, Silva R, Nunes C, Reis S, Ferreira L, Vieira C, Carvalho F, de Bastos ML, Remiao F.  2013.  Mechanisms of P-gp inhibition and effects on membrane fluidity of a new rifampicin derivative, 1,8-dibenzoyl-rifampicin, JUL 18. TOXICOLOGY LETTERS. 220:259-266., Number 3 Abstract

Purpose: To assess P-glycoprotein (P-gp)-modulation ability and the mechanisms of P-gp inhibition mediated by a new synthetic rifampicin derivative, 1,8-dibenzoyl-rifampicin (DiBenzRif), in an in vitro model of the blood-brain barrier (BBB), RBE4 cells, and in membrane mimetic models (liposomes). Methods: P-gp expression (western blot) and activity {[}rhodamine 123 accumulation studies] were assessed until 72 h of exposure to DiBenzRif. The effects on intracellular ATP levels and on P-gp ATPase activity were studied using luciferin-luciferase bioluminescence assay. Membrane fluidity changes were tracked by steady-state anisotropy measurements. Non-P-gp-related rhodamine 123 accumulation was evaluated using liposomes prepared with the main lipids present in RBE4 cell membranes. Results: A significant increase in intracellular rhodamine 123 content was observed in DiBenzRif-treated cells at all tested time-points. This effect was associated with a significant reduction in ATP intracellular levels, the inhibition of P-gp ATPase activity and a significant increase in membrane fluidity. DiBenzRif also favoured rhodamine 123 accumulation in a liposomal model of RBE4 cells, suggesting that it may be useful in increasing intracellular levels of substances that passively diffuse into the cells. Conclusion: DiBenzRif-induced inhibitory effect on P-gp increases xenobiotic accumulation in BBB cells, which may contribute to the development of therapeutic adjuvants to enhance brain penetration of drugs. (C) 2013 Elsevier Ireland Ltd. All rights reserved.

Simão, J, Singer J, Veiga L.  2013.  A Comparative Look at Adaptive Memory Management in Virtual Machines, dec. IEEE CloudCom 2013. : IEEE Abstract2013-cloudcom-simao-c.pdf

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Silva, JPM, Simão J, Veiga L.  2013.  Ditto – Deterministic Execution Replayability-as-a-Service for Java VM on Multiprocessors, dec. ACM/IFIP/Usenix International Middleware Conference (Middleware 2013). : Springer Abstract2013-middleware-silva.pdf

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