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2014
Santos, JP, Martins MC, Costa AM, Marques JP, Indelicato P, Parente F.  2014.  Theoretical determination of K X-ray transition energy and probability values for highly charged ions of lanthanum and cerium, Sep 11. The European Physical Journal D. 68:244., Number 9 AbstractWebsite
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Costa, {MN}, Veigas B, Jacob {JM }, Santos {DS }, Gomes J, Baptista {PV}, Martins R, Inácio J, Fortunato E.  2014.  A low cost, safe, disposable, rapid and self-sustainable paper-based platform for diagnostic testing: Lab-on-paper, mar. Nanotechnology. 25, Number 9: IOP Publishing Abstract

There is a strong interest in the use of biopolymers in the electronic and biomedical industries, mainly towards low-cost applications. The possibility of developing entirely new kinds of products based on cellulose is of current interest, in order to enhance and to add new functionalities to conventional paper-based products. We present our results towards the development of paper-based microfluidics for molecular diagnostic testing. Paper properties were evaluated and compared to nitrocellulose, the most commonly used material in lateral flow and other rapid tests. Focusing on the use of paper as a substrate for microfluidic applications, through an eco-friendly wax-printing technology, we present three main and distinct colorimetric approaches: (i) enzymatic reactions (glucose detection); (ii) immunoassays (antibodies anti-Leishmania detection); (iii) nucleic acid sequence identification (Mycobacterium tuberculosis complex detection). Colorimetric glucose quantification was achieved through enzymatic reactions performed within specific zones of the paper-based device. The colouration achieved increased with growing glucose concentration and was highly homogeneous, covering all the surface of the paper reaction zones in a 3D sensor format. These devices showed a major advantage when compared to the 2D lateral flow glucose sensors, where some carryover of the coloured products usually occurs. The detection of anti-Leishmania antibodies in canine sera was conceptually achieved using a paper-based 96-well enzyme-linked immunosorbent assay format. However, optimization is still needed for this test, regarding the efficiency of the immobilization of antigens on the cellulose fibres. The detection of Mycobacterium tuberculosis nucleic acids integrated with a non-cross-linking gold nanoprobe detection scheme was also achieved in a wax-printed 384-well paper-based microplate, by the hybridization with a species-specific probe. The obtained results with the above-mentioned proof-of-concept sensors are thus promising towards the future development of simple and cost-effective paper-based diagnostic devices.

Rahangdale, HV, Guerra M, Das PK, De S, Santos JP, Mitra D, Saha S.  2014.  Determination of subshell-resolved <span class="aps-inline-formula"><math><mi>L</mi></math></span>-shell-ionization cross sections of gold induced by 15–40-keV electrons, Jun 14. Physical Review A. 89:052708., Number 5 AbstractWebsite
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Amaro, P, Szabo CI, Schlesser S, Gumberidze A, Kessler EG, Henins A, Le Bigot EO, Trassinelli M, Isac JM, Travers P, Guerra M, Santos JP, Indelicato P.  2014.  A vacuum double-crystal spectrometer for reference-free X-ray spectroscopy of highly charged ions, Jun 01. Radiation Physics and Chemistry. 98:132-149., Number C: Elsevier AbstractWebsite

Radiation Physics and Chemistry, 98 + (2014) 132-149. doi:10.1016/j.radphyschem.2014.01.015

Barbosa, DJ, Serrat R, Mirra S, Quevedo M, Gomez de Barreda E, Avila J, Ferreira LM, Branco PS, Fernandes E, de Bastos ML, Capela JP, Soriano E, Carvalho F.  2014.  The Mixture of ``Ecstasy{''} and Its Metabolites Impairs Mitochondrial Fusion/Fission Equilibrium and Trafficking in Hippocampal Neurons, at In Vivo Relevant Concentrations, JUN. TOXICOLOGICAL SCIENCES. 139, Number 2 Abstract
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Lopes, LC, de Carvalho JE, Kakimore M, Vendramini-Costa DB, Medeiros MA, Spindola HM, Avila-Roman J, Lourenco AM, Motilva V.  2014.  Pharmacological characterization of Solanum cernuum Vell.: 31-norcycloartanones with analgesic and anti-inflammatory properties, JUN. INFLAMMOPHARMACOLOGY. 22:179-185., Number 3 Abstract
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Safari, L, Amaro P, Santos JP, Fratini F.  2014.  Angular and polarization analysis for two-photon decay of <span class="aps-inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML"><mrow><mn>2</mn><mi>s</mi></mrow></math>&, Jul 29. Physical Review A. 90:014502., Number 1 AbstractWebsite

The amplitude of two-photon transitions between hyperfine states in hydrogenlike ions is derived based on the relativistic Dirac equation and second-order perturbation theory. We study angular and linear polarization properties of the photon pair emitted in the decay of $2s$ states, where spin-flip and non-spin-flip transitions are highlighted. We pay particular attention to hydrogenlike uranium, since it is an ideal candidate for investigating relativistic and high-multipole effects, such as spin-flip transitions. Two types of emission patterns are identified: (i) non-spin-flip transitions are found to be characterized by an angular distribution of the type $W($\theta${})$\sim${}1+{cos}^{2}$\theta${}$ while the polarizations of the emitted photons are parallel; and (ii) spin-flip transitions have somewhat smaller decay rates and are found to be characterized by an angular distribution of the type $W($\theta${})$\sim${}1$-${}1/3{cos}^{2}$\theta${}$ while the polarizations of the emitted photons are orthogonal, where $$\theta${}$ is the angle between photons directions. Deviations due to nondipole and relativistic contributions are evaluated for both types of transitions. This work is the first step toward exploring the effect of the nucleus over the angular and polarization properties of the photon pairs emitted by two-photon transitions.

Fratini, F, Safari L, Hayrapetyan AG, Jankala K, Amaro P, Santos JP.  2014.  Quantized form factor shift in the presence of free electron laser radiation, Jul 01. EPL (Europhysics Letters). 107:13002., Number 1: IOP Publishing AbstractWebsite

In electron scattering, the target form factors contribute significantly to the diffraction pattern and carry information on the target electromagnetic charge distribution. Here we show that the presence of electromagnetic radiation, as intense as currently available in free electron lasers, shifts the dependence of the target form factors by a quantity that depends on the number of photons absorbed or emitted by the electron as well as on the parameters of the electromagnetic radiation. As example, we show the impact of intense ultraviolet and soft X-ray radiation on elastic electron scattering by the Ne-like argon ion and by the xenon atom. We find that the shift brought by the radiation to the form factor is of the order of some percent. Our results may open up a new avenue to explore matter with the assistance of laser.

Silva, J, Fernandes {AR}, Baptista {PV}.  2014.  Application of Nanotechnology in Drug Delivery, jul. Application of Nanotechnology in Drug Delivery. (Sezer, {Ali Demir}, Ed.).: InTech Abstract
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Barbosa, DJ, Capela JP, Silva R, Vilas-Boas V, Ferreira LM, Branco PS, Fernandes E, de Bastos ML, Carvalho F.  2014.  The mixture of ``ecstasy{''} and its metabolites is toxic to human SH-SY5Y differentiated cells at in vivo relevant concentrations, FEB. ARCHIVES OF TOXICOLOGY. 88:455-473., Number 2 Abstract
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Barbosa, DJ, Capela JP, Silva R, Ferreira LM, Branco PS, Fernandes E, Bastos ML, Carvalho F.  2014.  ``Ecstasy{''}-induced toxicity in SH-SY5Y differentiated cells: role of hyperthermia and metabolites, FEB. ARCHIVES OF TOXICOLOGY. 88:515-531., Number 2 Abstract
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Larguinho, M, Costa PM, c}alo Sousa G{\c, Diniz {MS }, Costa {MH}, Baptista P.  2014.  Histopathological findings on Carassius auratus hepatopancreas upon exposure to acrylamide: Correlation with genotoxicity and metabolic alterations, dec. Journal of Applied Toxicology. 34:1293–1302., Number 12: John Wiley & Sons, Ltd. Abstract

Acrylamide is an amide used in several industrial applications making it easily discharged to aquatic ecosystems. The toxicity of acrylamide to aquatic organisms is scarcely known, although previous studies with murine models provided evidence for deleterious effects. To assess the effects of acrylamide to freshwater fish, goldfish (Carassius auratus L.) were exposed to several concentrations of waterborne acrylamide and analysed for genotoxic damage, alterations to detoxifying enzymes and histopathology. Results revealed a dose-dependent increase in total DNA strand breakage, the formation of erythrocytic nuclear abnormalities and in the levels of hepatic cytochrome P4501A (CYP1A) and glutathione S-transferase (GST) activity. In addition, acrylamide induced more histopathological changes to pancreatic acini than to the hepatic parenchyma, regardless of exposure concentration, whereas hepatic tissue only endured significant alterations at higher concentrations of exposure. Thus, results confirm the genotoxic potential of acrylamide to fish and its ability to induce CYP1A, probably as a direct primary defence mechanism. This strongly suggests the substance's pro-mutagenic potential in fish, similarly to what is known for rodents. However, the deleterious effects observed in the pancreatic acini, more severe than in the liver, could indicate a specific, albeit unknown toxic mechanism of acrylamide to fish that overran the organism's metabolic defences against a chemical agent rather than causing a general systemic failure.

Conde, J, Larguinho M, Cordeiro A, Raposo {LR }, Costa {PM }, Santos S, Diniz {MS }, Fernandes {AR}, Baptista {PV}.  2014.  Gold-nanobeacons for gene therapy: Evaluation of genotoxicity, cell toxicity and proteome profiling analysis, aug. Nanotoxicology. 8:521–532., Number 5: Informa Healthcare Abstract

Antisense therapy is a powerful tool for post-transcriptional gene silencing suitable for down-regulating target genes associated to disease. Gold nanoparticles have been described as effective intracellular delivery vehicles for antisense oligonucleotides providing increased protection against nucleases and targeting capability via simple surface modification. We constructed an antisense gold-nanobeacon consisting of a stem-looped oligonucleotide double-labelled with 3′-Cy3 and 5′-Thiol-C6 and tested for the effective blocking of gene expression in colorectal cancer cells. Due to the beacon conformation, gene silencing was directly detected as fluorescence increases with hybridisation to target, which can be used to assess the level of silencing. Moreover, this system was extensively evaluated for the genotoxic, cytotoxic and proteomic effects of gold-nanobeacon exposure to cancer cells. The exposure was evaluated by two-dimensional protein electrophoresis followed by mass spectrometry to perform a proteomic profile and 3-(4,5-Dimethylthiazol-2- Yl)-2,5-Diphenyltetrazolium Bromide (MTT) assay, glutathione-S-transferase assay, micronucleus test and comet assay to assess the genotoxicity. This integrated toxicology evaluation showed that the proposed nanotheranostics strategy does not exhibit significant toxicity, which is extremely relevant when translating into in vivo systems.

Morawiec, S, Mendes MJ, Filonovich SA, Mateus T, Mirabella S, Águas H, Ferreira I, Simone F, Fortunato E, Martins R, Priolo F, Crupi I.  2014.  Photocurrent enhancement in thin a-Si: H solar cells via plasmonic light trapping, 8-13 Jun. CLEO: Science and Innovations. : Optical Society of America Abstract

Photocurrent enhancement in thin a-Si:H solar cells due to the plasmonic light trapping is investigated, and correlated with the morphology and the optical properties of the self-assembled silver nanoparticles incorporated in the cells’ back reflector.

Otrelo-Cardoso, AR, Nair RR, Correia MAS, Rivas MG, Santos-Silva T.  2014.  TupA: A Tungstate Binding Protein in the Periplasm of Desulfovibrio alaskensis G20, 2014/05/29/accep. International Journal of Molecular Sciences. 15(7):11783-11798.: MDPI AbstractWebsite

The TupABC system is involved in the cellular uptake of tungsten and belongs to the ABC (ATP binding cassette)-type transporter systems. The TupA component is a periplasmic protein that binds tungstate anions, which are then transported through the membrane by the TupB component using ATP hydrolysis as the energy source (the reaction catalyzed by the ModC component). We report the heterologous expression, purification, determination of affinity binding constants and crystallization of the Desulfovibrio alaskensis G20 TupA. The tupA gene (locus tag Dde_0234) was cloned in the pET46 Enterokinase/Ligation-Independent Cloning (LIC) expression vector, and the construct was used to transform BL21 (DE3) cells. TupA expression and purification were optimized to a final yield of 10 mg of soluble pure protein per liter of culture medium. Native polyacrylamide gel electrophoresis was carried out showing that TupA binds both tungstate and molybdate ions and has no significant interaction with sulfate, phosphate or perchlorate. Quantitative analysis of metal binding by isothermal titration calorimetry was in agreement with these results, but in addition, shows that TupA has higher affinity to tungstate than molybdate. The protein crystallizes in the presence of 30% (w/v) polyethylene glycol 3350 using the hanging-drop vapor diffusion method. The crystals diffract X-rays beyond 1.4 Å resolution and belong to the P2(1) space group, with cell parameters a = 52.25 Å, b = 42.50 Å, c = 54.71 Å, β = 95.43°. A molecular replacement solution was found, and the structure is currently under refinement.

F. S. Silva, T, M. D. R. S. Martins L, Guedes da Silva FMC, Kuznetsov ML, Fernandes AR, Silva A, Pan C-J, Lee J-F, Hwang B-J, J. L. Pombeiro A.  2014.  Cobalt Complexes with Pyrazole Ligands as Catalyst Precursors for the Peroxidative Oxidation of Cyclohexane: X-ray Absorption Spectroscopy Studies and Biological Applications, 2014/04/01. Chemistry – An Asian Journal. 9(4):1132-1143.: WILEY-VCH Verlag AbstractWebsite
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Silva, JA, Lourenço JM, Paulino H.  2014.  Boosting Locality in Multi-version Partial Data Replication, 2014. : Universidade Nova de Lisboa2014-silva.pdf
Gomes, JF, Miranda RM, Santos TJ, Carvalho PA.  2014.  Emission of nanoparticles during friction stir welding (FSW) of aluminium alloys, 2014. Journal of Toxicology and Environmental Health - Part A: Current Issues. 77(14-16):924-930.: Taylor and Francis Inc. AbstractWebsite
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Santos, TG, Miranda RM, Vilaça P.  2014.  Friction Stir Welding assisted by electrical Joule effect, 2014. Journal of Materials Processing Technology. 214(10):2127-2133.: Elsevier Ltd AbstractWebsite
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Santos, TG, Miranda RM, Vilaça P.  2014.  Friction stir welding assisted by electrical joule effect to overcome lack of penetration in aluminium alloys, 2014. 17th Conference of the European Scientific Association on Material Forming, ESAFORM 2014. 611-612:763-772., Espoo: Trans Tech Publications Ltd AbstractWebsite
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Rodrigues, A, Gutierrez-Patricio S, Miller AZ, Saiz-Jimenez C, Wiley R, Nunes D, Vilarigues M, Macedo MF.  2014.  Fungal biodeterioration of stained-glass windows, 2014. International Biodeterioration and Biodegradation. 90:152-160. AbstractWebsite
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Vilaça, P, Santos TG, Rosado L, Miranda RM.  2014.  Innovative concept and application of EC probe for inspection of friction stir welds, 2014. International Journal of Microstructure and Materials Properties. 9(3-5):314-326.: Inderscience Enterprises Ltd. AbstractWebsite

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Santos, TG, Miranda RM, De Carvalho CCCR.  2014.  A new NDT technique based on bacterial cells to detect micro surface defects, 2014. NDT and E International. 63:43-49. AbstractWebsite
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Santos, TG, Sorger G, Vilaça P, Miranda RM.  2014.  A non-conventional technique for evaluating welded joints based on the electrical conductivity, 2014. 17th Conference of the European Scientific Association on Material Forming, ESAFORM 2014. 611-612:671-676., Espoo: Trans Tech Publications Ltd AbstractWebsite
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João, C, Vasconcelos J, Silva JC, Borges JP.  2014.  An Overview of Inverted Colloidal Crystal Systems for Tissue Engineering, 2014. Tissue Engineering Part B-Reviews. 20:437-454. AbstractWebsite

Scaffolding is at the heart of tissue engineering but the number of techniques available for turning biomaterials into scaffolds displaying the features required for a tissue engineering application is somewhat limited. Inverted colloidal crystals (ICCs) are inverse replicas of an ordered array of monodisperse colloidal particles, which organize themselves in packed long-range crystals. The literature on ICC systems has grown enormously in the past 20 years, driven by the need to find organized macroporous structures. Although replicating the structure of packed colloidal crystals (CCs) into solid structures has produced a wide range of advanced materials (e.g., photonic crystals, catalysts, and membranes) only in recent years have ICCs been evaluated as devices for medical/pharmaceutical and tissue engineering applications. The geometry, size, pore density, and interconnectivity are features of the scaffold that strongly affect the cell environment with consequences on cell adhesion, proliferation, and differentiation. ICC scaffolds are highly geometrically ordered structures with increased porosity and connectivity, which enhances oxygen and nutrient diffusion, providing optimum cellular development. In comparison to other types of scaffolds, ICCs have three major unique features: the isotropic three-dimensional environment, comprising highly uniform and size-controllable pores, and the presence of windows connecting adjacent pores. Thus far, this is the only technique that guarantees these features with a long-range order, between a few nanometers and thousands of micrometers. In this review, we present the current development status of ICC scaffolds for tissue engineering applications.