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Submitted
Basilio, N, Laia CAT, Pina F.  Submitted.  {Excited-State Proton Transfer in Confined Medium. 4-Methy1-7-hydroxyflavylium and beta-Naphthol Incorporated in Cucurbit{[}7]uril}, {FEB 12}. {JOURNAL OF PHYSICAL CHEMISTRY B}. {119}:{2749-2757}., Number {6, SI} Abstract
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Pires, RF, Moro A, Lourenco A, Lima JC, Casimiro T, Bonifacio VDB.  Submitted.  {Molecular Weight Determination by Luminescent Chemo-enzymatics}, {DEC 16}. {CHEMISTRYSELECT}. {1}:{6818-6822}., Number {21} Abstract
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Gomis-Berenguer, A, Seredych M, Iniesta J, Lima JC, Bandosz TJ, Ania CO.  Submitted.  {Sulfur-mediated photochemical energy harvesting in nanoporous carbons}, {AUG}. {CARBON}. {104}:{253-259}. Abstract
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Nascimento, SMC, Linhares JMM, Joao CAR, Amano K, Montagner C, Melo MJ, Vilarigues M, de Freitas MH, Alfaro C, Bailao A.  Submitted.  {The preferred chromatic composition of unfamiliar paintings is similar to original}, {AUG}. {PERCEPTION}. {44}:{134}., Number {1} Abstract
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Santoro, S, Vidorreta IM, Sebastian V, Moro A, Coelhoso IM, Portugal CAM, Lima JC, Desiderio G, Lombardo G, Drioli E, Mallada R, Crespo JG, Criscuoli A, Figoli A.  Submitted.  {A non-invasive optical method for mapping temperature polarization in direct contact membrane distillation}, {AUG 15}. {JOURNAL OF MEMBRANE SCIENCE}. {536}:{156-166}. Abstract
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Delgado, JM, Nunes D, Fortunato E, Laia CAT, Branco LC, Vilarigues M.  Submitted.  {The effect of three luminescent ionic liquids on corroded glass surfaces - A first step into stained-glass cleaning}, {APR}. {CORROSION SCIENCE}. {118}:{109-117}. Abstract
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Coutinho, IB, Freitas A, Macanita AL, Lima JC.  Submitted.  {Effect of water content on the acid-base equilibrium of cyanidin-3-glucoside}, {APR 1}. {FOOD CHEMISTRY}. {172}:{476-480}. Abstract
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Pereira, HG, Sousa DG, Bradbury JS, Lourenço JM.  Submitted.  Automatic Generation of Contracts for Concurrent Java Programs.
Thales, P, Vale TM, Dias RJ, Lourenço JM.  Submitted.  Empowering a Relational Database with Lazy State Determination.
Luna, F, Bradbury JS, Lourenço JM.  Submitted.  OSCAR: A Noise Injection Framework for Concurrent Java Programs.
Moro, AJ, Rome B, Aguilo E, Arcau J, Puttreddy R, Rissanen K, Lima JC, Rodriguez L.  Submitted.  {A coumarin based gold(I)-alkynyl complex: a new class of supramolecular hydrogelators}. {ORGANIC & BIOMOLECULAR CHEMISTRY}. {13}:{2026-2033}., Number {7} Abstract
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Gavara, R, Lima JC, Rodriguez L.  Submitted.  {Effect of solvent polarity on the spectroscopic properties of an alkynyl gold(I) gelator. The particular case of water}. {PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES}. {15}:{635-643}., Number {5} Abstract
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Nascimento, SMC, Linhares JMM, Joao CAR, Amano K, Montagner C, Melo MJ, Vilarigues M.  Submitted.  {Estimating the Colors of Paintings}. {COMPUTATIONAL COLOR IMAGING, CCIW 2015}. {9016}({Tremeau, A, Schettini, R., Tominaga, S}, Eds.).:{236-242}. Abstract
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Bassani, DM, Cucinotta F, Bohne C, Basilio N, Lemon C, Allain C, Sundstrom V, Campagna S, Rohacova J, Ketteler Y, Ryan STJ, Vos J, de Silva AP, Slota M.  Submitted.  {Light activated molecular machines and logic gates: general discussion}. {FARADAY DISCUSSIONS}. {185}:{399-411}. Abstract
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Pikramenou, Z, Weinstein J, Pan Q, Lewis F, Bassani DM, Wuerthner F, Moucheron C, Slota M, Diaz-Moscoso A, Karlsson J, Basilio N, Adams D, Scandola F, Bohne C, Lemon C, Campagna S, Rohacova J, Ohashi K, Ploetz P-A, Monti F, Kelly JM, Keane P, Gibson E, Lemercier G, Ruggi A, Cucinotta F, Gust D, Bradberry S, Vos J, Pistolis G, Mauro M, Tuite E, De Cola L, Ceroni P, Maneiro M, Galoppini E, Gunnlaugsson T.  Submitted.  {Self-organization of photo-active nanostructures: general discussion}. {FARADAY DISCUSSIONS}. {185}:{529-548}. Abstract
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Aguilo, E, Gavara R, Baucells C, Guitart M, Lima JC, Llorca J, Rodriguez L.  Submitted.  {Tuning supramolecular aurophilic structures: the effect of counterion, positive charge and solvent}. {DALTON TRANSACTIONS}. {45}:{7328-7339}., Number {17} Abstract
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In Press
Simoes, SG, Dias L, Gouveia JP, Seixas J, de Miglio R, Gargiulo M, Long G, Giannakidis G.  In Press.  InSmart – A methodology for combining modelling with stakeholder input towards EU cities decarbonisation.. Journal of Cleaner Production.
2025
Leitão, F, Galrito D, Branco LC, Cruz H, Branco PS.  2025.  Electrochemical studies of Benzoquinone, Hydrobenzoquinone, Diphenoquinone, and Hydrodiphenoquinone-Based Compounds. Electrochem. Sci. Adv. :e70006.
Phillips, AF, Ferreira LM, Branco PS, Lourenço A.  2025.  The Synthesis of Terpenes Via Enantioselective Organocatalysis. Asian J. Org. Chem.. :e202500229.
Royo, B, Lenis-Rojas {OA}, Roma C, Carvalho B, Andrade V, Friães S, Cabezas-Sain P, Fernández {JAA}, Vila {SF}, Arana {AJ}, Sanchez L, Baptista {PV}, Gomes {CSB}, Fernandes {AR}.  2025.  Triazole-Derived Ruthenium(II) Complexes as Novel Candidates for Cancer Therapy. ChemPlusChem. :e202400775.: Wiley | Wiley-VCH Verlag Abstract

The first examples of Ru(II) h6-arene (benzene and p-cymene) complexes containing a bidentate triazolylidene-triazolide ligand have been prepared and fully characterized. Their antiproliferative effect has been investigated against tumour cells A2780 (ovarian carcinoma), HCT116 (colorectal carcinoma), and HCT116dox (colorectal carcinoma resistant to doxorubicin), and in human dermal fibroblasts. The Ru complex bearing the p-cymene arene group exhibited a stronger antiproliferative effect across all tested cell lines, while the benzene-containing complex displayed higher selectivity toward tumor cells. Both complexes induced apoptosis, likely through ROS production (in the benzene complex), and inhibited tumorigenic processes, including cell migration and angiogenesis. In zebrafish models, they showed strong selectivity for cancer cells with minimal toxicity to healthy cells, effectively reducing the proliferation of HCT116 colorectal cancer cells. This study provides the first in vivo evidence of the anticancer potential of Ru triazolylidenes in zebrafish models.

2024
Sarrato, J, Raimundo B, Domingues L, Filipe SR, Lima CJ, Branco PS.  2024.  Synthesis of inverse push-pull coumarin dyes and their application as solvatochromic probes and labelling agents for bacterial cell membranes, SEP. DYES AND PIGMENTS. 228 Abstract
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Bravo, {AC}, Morão B, Luz A, Dourado R, Oliveira B, Guedes A, Moreira-Barbosa C, Fidalgo C, Mascarenhas-Lemos L, Costa-Santos {MP}, Maio R, Paulino J, {Viana Baptista} P, Fernandes {AR}, Cravo M.  2024.  Bringing Hope to Improve Treatment in Pancreatic Ductal Adenocarcinoma: A New Tool for Molecular Profiling of KRAS Mutations in Tumor and Plasma Samples, oct. Cancers. 16, Number 20: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Background/Objectives: Pancreatic ductal adenocarcinoma (PDAC) incidence is rising, and prognosis remains poor due to late diagnosis and limited effective therapies. Currently, patients are treated based on TNM staging, without molecular tumor characterization. This study aimed to validate a technique that combines the amplification refractory mutation system (ARMS) with high-resolution melting analysis (HRMA) for detecting mutations in codon 12 of KRAS in tumor and plasma, and to assess its prognostic value. Methods: Prospective study including patients with newly diagnosed PDAC with tumor and plasma samples collected before treatment. Mutations in codon 12 of KRAS (G12D, G12V, G12C, and G12R) were detected using ARMS–HRMA and compared to Sanger sequencing (SS). Univariate and multivariate analyses were used to evaluate the prognostic significance of these mutations. Results: A total of 88 patients, 93% with ECOG-PS 0–1, 57% with resectable disease. ARMS–HRMA technique showed a higher sensitivity than SS, both in tumor and plasma (77% vs. 51%; 25 vs. 0%, respectively). The most frequent mutation was G12D (n = 32, 36%), followed by G12V (n = 22, 25%). On multivariate analysis, patients with G12D and/or G12C mutations, either in tumor or plasma, had lower PFS (HR 1.792, 95% CI 1.061–3.02

Malta, G, Pina J, Lima CJ, Parola JA, Branco PS.  2024.  Acenaphthylene-Based Chromophores for Dye-Sensitized Solar Cells: Synthesis, Spectroscopic Properties, and Theoretical Calculations, MAR 15. ACS OMEGA. 9:14627-14637., Number 12 Abstract
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Oliveira, AR, Mota C, Vilela-Alves G, Manuel RR, Pedrosa N, Fourmond V, Klymanska K, Léger C, Guigliarelli B, Romão MJ, Cardoso Pereira IA.  2024.  An allosteric redox switch involved in oxygen protection in a CO2 reductase, 2024. Nat Chem Biol. 20(1):111-119. AbstractWebsite

Metal-dependent formate dehydrogenases reduce CO2 with high efficiency and selectivity, but are usually very oxygen sensitive. An exception is Desulfovibrio vulgaris W/Sec-FdhAB, which can be handled aerobically, but the basis for this oxygen tolerance was unknown. Here we show that FdhAB activity is controlled by a redox switch based on an allosteric disulfide bond. When this bond is closed, the enzyme is in an oxygen-tolerant resting state presenting almost no catalytic activity and very low formate affinity. Opening this bond triggers large conformational changes that propagate to the active site, resulting in high activity and high formate affinity, but also higher oxygen sensitivity. We present the structure of activated FdhAB and show that activity loss is associated with partial loss of the metal sulfido ligand. The redox switch mechanism is reversible in vivo and prevents enzyme reduction by physiological formate levels, conferring a fitness advantage during O2 exposure.

Rippel, R, Leitão F, Georgieva MK, Mamede M, Gomes CSB, Roma-Rodrigues C, Fernandes AR, Lourenço A, Ferreira LM, Branco PS.  2024.  Exploring The Synthesis of Aminal Guanidine-Based Molecules: Synthesis of Cernumidine and Analogues, and Survey of its Anti-inflammatory Activity. New J. Chem.. 48:5247–5257.
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