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2017
Fischer, M, Krings B-J, Moniz AB, Zimpelmann E.  2017.  Herausforderungen der Mensch-Roboter-Kollaboration. Lernen & Lehren. 2017(32):8-14.
Machado, C, Carvalho F, Costa M, Martins S, Machado A, Ruivo A, Lima A, Ferreira JL, Vilarigues M.  2017.  History of materials: a new tool for conservation of glass and ceramics; Education and Research in Conservation – Restoration. ENCoRE 2016. , Cambridge
Soares, PIP, Echeverria C, Baptista AC, João C, Fernandes S, Almeida A, Silva JC, Godinho MH, Borges JP.  2017.  Hybrid polysaccharide-based systems for biomedical applications. Hybrid Polymer Composite Materials: Applications. (Manju Kumari Thakur, Thakur, Vijay Kumar, Asokan Pappu, Eds.).:107-149., USA: Woodhead Publishing, Elsevier Abstract

Hybrid materials have been widely studied for structural applications. Polysaccharide-based fibers, especially cellulosic fibers, have been explored in the last two decades as substitutes of the traditional reinforcements made of glass or carbon fibers due to their mechanical properties. However, their biocompatibility, biodegradability, and chemistry have attracted the researchers and new developments in the field of smart and functional materials arise in diverse applications. This chapter will focus on the biomedical applications of polysaccharide-based smart and functional materials, namely those concerning biosensors and actuators, theranostic systems, and tissue-engineering applications. Special attention will be given to cellulose- and chitin/chitosan-based hybrid materials because these are the two most abundant polysaccharides and probably the most promising for the development of hybrid materials for biomedical applications. Biomimetic strategies for the development of smart and functional hybrid materials will also be highlighted.

Dajkovic, A, Tesson B, Chauhan S, Courtin P, Keary R, Flores P, Marliere C, Filipe SR, Chapot-Chartier M-P, Carballido-Lopez R.  2017.  Hydrolysis of Peptidoglycan is Modulated by Amidation of meso-Diaminopimelic Acid and Mg2+ in Bacillus subtilis. Mol. Microbiol. 104:972-988.
Faghihi, P, Almeida T, Quintas F.  2017.  The Impact of the Evolution of Modern Technology on Public Glass Art. Arte Pública na Era da Criatividade Digital. Atas do Colóquio Internacional 2017. Public Art in the Digital Creativity Era. International Conference Proceedings 2017. :482-489., Porto, Portugal: Universidade Católica Edutora / CITAR
Loureiro, J, Mateus T, Filonovich S, Ferreira M, Figueira J, Rodrigues A, Donovan BF, Hopkins PE, Ferreira I.  2017.  Improved thermoelectric properties of nanocrystalline hydrogenated silicon thin films by post-deposition thermal annealing. Thin Solid Films. 642:276-280. AbstractWebsite

The influence of post-deposition thermal annealing on the thermoelectric properties of n-and p-type nanocrystalline hydrogenated silicon thin films, deposited by plasma enhanced chemical vapour deposition, was studied in this work. The Power Factor of p-type films was improved from 7× 10− 5 to 4× 10− 4 W/(mK 2) as the annealing temperature, under vacuum, increased up to 400° C while for n-type films it has a minor influence. Optimized Seebeck coefficient values of 460 μV/K and− 320 μV/K were achieved for p-and n-type films, respectively, with crystalline size in the range of 10 nm, leading to remarkable low thermal conductivity values (< 10 Wm− 1. K− 1) at room temperature.

Fernandes, CSM, Pina AS, Batalha ÍL, Roque ACA.  2017.  Magnetic fishing of recombinant green fluorescent proteins and tagged proteins with designed synthetic ligands. Separation Science and Technology. AbstractWebsite

Biomimetic ligands have emerged to overcome disadvantages inherent in biological ligands. In particular, the Ugi reaction can generate scaffolds where molecular diversity can be introduced, allowing the synthesis and screening of ligand libraries in a high-throughput manner against a variety of biological targets. Two adsorbents bearing Ugi-based synthetic ligands, coined A4C7 and A7C1, were previously developed for the selective recovery of green fluorescent protein (GFP) and RKRKRK-tagged GFP directly from Escherichia coli crude extracts. This work describes, for the first time, the in situ synthesis of Ugi-based ligands on magnetic beads and their application in the magnetic recovery of cognate proteins.

Ferreira, J, Santos T, Pereira P, Corvo MC, Queiroz JA, Sousa F, Cruz C.  2017.  Naphthalene amine support for G-quadruplex isolation. Analyst. 142(16):2982-2994.: Royal Society of Chemistry AbstractWebsite

G-quadruplex (G4) is involved in many biological processes, such as telomere function, gene expression and DNA replication. The selective isolation of G4 using affinity ligands that bind tightly and selectively is a valuable strategy for discovering new G4 binders for the separation of G4 from duplexes or the discrimination of G4 structures. In this work, one affinity chromatographic support was prepared using a naphthalene amine as a G4 binder. The ligand was immobilized on epoxy-activated Sepharose CL-6B using a long spacer arm and was characterized by HR-MAS spectroscopy. The supercoiled (sc) isoform of pVAX1-LacZ and pVAX1-G4 was isolated from a native sample. Also, the recovery and isolation of the plasmid isoforms from Escherichia coli lysate samples were achieved using an ionic gradient with different concentrations of NaCl in 10 mM Tris-HCl (pH 7.4). The retention times of different DNA/single strand sequences that can form G4, such as, c-MYC, c-kit1, c-kit2, tetrameric, telomeric (23AG), thrombin aptamer (TBA) and 58Sγ3 in this support were evaluated. Our experimental results suggest that the support exhibits selectivity for parallel c-MYC and c-kit1 G4s. In vitro transcription was performed using purified sc pVAX1-G4 and pPH600 to induce G4 formation and circular dichroism (CD) analysis confirmed that both transcripts adopt a parallel G4 topology.

Faria, P, Duarte P, Barbosa D, Ferreira I.  2017.  New composite of natural hydraulic lime mortar with graphene oxide. Constr Build Mater. 156:1150-1157. AbstractWebsite

Recent studies show the incorporation of graphene oxide (GO) in cement composites. But these composites are frequently incompatible with original materials for building rehabilitation. To overcome this limitation, natural hydraulic lime mortars were used as matrix, and the influence of GO percentage and type of mixing was investigated. The influence on the microstructure, mechanical and physical properties was assessed. The best results were obtained with dispersed GO at concentrations of 0.05% and 0.1%. A slight improvement of mechanical and physical characteristics was achieved. This could lead to new mortars with improved properties that can be used for building rehabilitation.

Figueira, J, Loureiro J, Marques J, Bianchi C, Duarte P, Ruoho M, Tittonen I, Ferreira I.  2017.  Optimization of Cuprous Oxides Thin Films to be used as Thermoelectric Touch Detectors. ACS Appl Mater Interfaces. 9(7):6520-6529. AbstractWebsite

The electronic and optical properties of p-type copper oxides (CO) strongly depend on the production technique as it influences the obtained phases: cuprous oxide (Cu2O) or cupric oxide (CuO), the most common ones. Cu films deposited by thermal evaporation have been annealed in air atmosphere, with temperature between 225 and 375 °C and time between 1 and 4 h. The resultant CO films have been studied to understand the influence of processing parameters in the thermoelectric, electrical, optical, morphological, and structural properties. Films with a Cu2O single phase are formed when annealing at 225 °C, while CuO single phase films can be obtained at 375 °C. In between, both phases are obtained in proportions that depend on the film thickness and annealing time. The positive sign of the Seebeck coefficient (S), measured at room temperature (RT), confirms the p-type behavior of both oxides, showing values up to 1.2 mV·°C–1and conductivity up to 2.9 (Ω·m)−1. A simple detector using Cu2O have been fabricated and tested with fast finger touch events

Almeida, T.  2017.  Pintura com vidro – diálogos de luz e cor. Pensar o fazer da pintura. 31 teses sobre investigar e criar em Pintura. (António Quadros Ferreira, Ed.).:374-381., Porto: i2ADS - Instituto de Investigação em Arte, Design e Sociedade & Faculdade de Belas Artes da Universidade do Porto
Batista, A, FátimaSerrano, Russo S, Reis C, Ortigueira M.  2017.  Pregnancy Monitoring Using Uterine Electromyography:. in Signal Processing and Monitoring in Labour (SPaM),. , Oxford
Cordeiro, T, Castiñeira C, Mendes D, Danède F, Sotomayor J, Fonseca IM, da Silva GM, Paiva A, Barreiros SF, Cardoso MM, Viciosa MT, Correia NT, Dionísio M.  2017.  Stabilizing Unstable Amorphous naproxen through Inclusion in Mesoporous Silica Hosts. Molecular Pharmaceutics. 14:3164−3177.Website
Sousa, DM, Lima JC, Ferreira I.  2017.  Synthesis of Cadmium Selenide Quantum Dots, Using 2, 2‐Bipyridine as a Capping and Phase Transfer Agent. ChemistrySelect. 2(3):1271-1274. AbstractWebsite

Cadmium selenide quantum dots (CdSe QDs), were synthesized by one‐pot or water‐to‐organic phase transfer and capped with molten 2,2′‐bipyridine (bipy). The obtained CdSe QDs by the two‐step procedure, reveal average sizes of 2 nm while the one‐pot are mixed with secondary salt products and bipy and are undetectable by TEM. However the absorption peak of both CdSe QDs was at 425 nm and the emission band is centered at 535 nm, with a band width at half height of 77 nm, when excited with 425 nm light. The two‐step CdSe QDs synthesis has the great advantage of capping the CdSe QDs with bipy, forming a solid phase, which is easily stored and dispersed in most of the organic solvents. On the other hand, the one‐pot procedure requires an extra step to remove the secondary products.

Marcelino, P, Marinho SH, Campos MC, Neves AR, Real C, Fontes FS, Carvalho A, Feio G, Martins BMF, Corvo LM.  2017.  Therapeutic activity of superoxide dismutase-containing enzymosomes on rat liver ischaemia-reperfusion injury followed by magnetic resonance microscopy. European Journal of Pharmaceutical Sciences. 109:464-471. AbstractWebsite

Liver ischaemia-reperfusion injury (IRI) may occur during hepatic surgery and is unavoidable in liver transplantation. Superoxide dismutase enzymosomes (SOD-enzymosomes), liposomes where SOD is at the liposomal surface expressing enzymatic activity in intact form without the need of liposomal disruption, were developed with the aim of having a better insight into its antioxidant therapeutic outcome in IRI. We also aimed at validating magnetic resonance microscopy (MRM) at 7 T as a tool to follow IRI. SOD-enzymosomes were characterized and tested in a rat ischaemia-reperfusion model and the therapeutic outcome was compared with conventional long circulating SOD liposomes and free SOD using biochemical liver injury biomarkers, histology and MRM. MRM results correlated with those obtained using classical biochemical biomarkers of liver injury and liver histology. Moreover, MRM images suggested that the therapeutic efficacy of both SOD liposomal formulations used was related to prevention of peripheral biliary ductular damage and disrupted vascular architecture. Therefore, MRM at 7 T is a useful technique to follow IRI. SOD-enzymosomes were more effective than conventional liposomes in reducing liver ischaemia-reperfusion injury and this may be due to a short therapeutic window.

Faria, J, Echeverria C, Borges JP, Godinho MH, Soares PIP.  2017.  Towards the development of multifunctional hybrid fibrillary gels: production and optimization by colloidal electrospinning. RSC Advances. 7(77):48972-48979. AbstractWebsite

The incorporation of thermosensitive microgels that can act as active sites into polymeric fibers through colloidal electrospinning originates multifunctional, highly porous, and biocompatible membranes suitable for biomedical applications. The use of polyvinylpyrrolidone (PVP), a biocompatible, water-soluble polymer as a fiber template, not only allows the use of a simple set-up to produce composite membranes, but also avoids the use of organic solvents to prepare such systems. Further crosslinking with ultraviolet (UV) radiation avoids membrane dissolution in physiological conditions. Highly porous, UV crosslinked composite membranes with monodisperse mean fiber diameters around 530 nm were successfully produced. These composite membranes showed a Young Modulus of 22 MPa, and an ultimate tensile strength of 3 MPa, accessed in the mechanical tests. Furthermore, the same composite membranes were able to swell about 30 times their weight after 1 hour in aqueous medium. In this work composite multifunctional membranes were designed and extensively studied. PVP, a biocompatible water-soluble polymer, was used as a fiber template to incorporate thermoresponsive poly-(N-isopropylacrylamide) (PNIPAAm)-based microgels into the composite membrane using colloidal electrospinning. The design of multifunctional membranes can be further tailored to several biomedical applications such as temperature-controlled drug delivery systems.

Sousa, JR, Silveira CM, Fontes P, Roma-Rodrigues C, Fernandes AR, Van Driessche G, Devreese B, Moura I, Moura JJG, Almeida MG.  2017.  Understanding the response of Desulfovibrio desulfuricans ATCC 27774 to different electron acceptors - biosynthetic costs modulate substrate selection. Biochim Biophys Acta. 1865:1455-1469.
Godinho, D, Dias D, Bernardo M, Lapa N, Fonseca I, Lopes H, Pinto F.  2017.  Adding value to gasification and co-pyrolysis chars as removal agents of Cr3+. Journal of Hazardous Materials. 321:173-182. AbstractWebsite

The present work aims to assess the efficiency of chars, obtained from the gasification and co-pyrolysis of rice wastes, as adsorbents of Cr3+ from aqueous solution. GC and PC chars, produced in the gasification and co-pyrolysis, respectively, of rice husk and polyethylene were studied. Cr3+ removal assays were optimised for the initial pH value, adsorbent mass, contact time and Cr3+ initial concentration. GC showed a better performance than PC with about 100% Cr3+ removal, due to the pH increase that caused Cr precipitation. Under pH conditions in which the adsorption prevailed (pH<5.5), GC presented the highest uptake capacity (21.1mg Cr3+ g−1 char) for the following initial conditions: 50mg Cr3+ L−1; pH 5; contact time: 24h;L/S ratio: 1000mLg−1. The pseudo-second order kinetic model showed the best adjustment to GC experimental data. Both the first and second order kinetic models fitted well to PC experimental data. The ion exchange was the dominant phenomenon on the Cr3+ adsorption by GC sample. Also, this char significantly reduced the ecotoxicity of Cr3+ solutions for the bacterium Vibrio fischeri. GC char proved to be an efficient material to remove Cr3+ from aqueous solution, without the need for further activation.

Gomes da Silva, M, Pereira MMA, Franco R, Dionisio M, Ferreira LM, Branco P, Costa C, Lourenco A, Pereira AS, Mata P, Sotomayor J, Lima C, Vilarigues M, Parola AJ, Laia CAT, Coutinho IB, Branco L, Pereira C, Moro A, Gago S, Basilio N, Marques MM.  2017.  CHEMISTRY - AN EXPERIMENTAL SCIENCE. 9TH INTERNATIONAL CONFERENCE ON EDUCATION AND NEW LEARNING TECHNOLOGIES (EDULEARN17). (Chova, LG, Martinez, AL, Torres, IC, Eds.).:2548-2556. Abstract

In the last two decades, it has been observed an increasing low enrolment of students in chemistry teaching courses in secondary schools. On the one hand, because of the negative connotation of chemistry, associated with the potentially toxic and pollutant chemical industry, and on the other hand, that the teaching of this subject is exclusively carried out only in a theoretical classroom environment with almost non-existent practical/experimental component, despite chemistry is an experimental science in its essence. This state of affairs has been reflected in chemistry degrees offered by Portuguese universities throughout the country, which in the application process for each academic year, ended up by never completely fulfilling the number of offered nunerus clausus. Considering that the pedagogical mission of the Faculty of Science and Technology of Universidade NOVA de Lisboa (FCT-NOVA), in particular its Department of Chemistry (DQ), aims to contribute to the human, scientific and technical development of students, a project has been settled in the last nine years in order to offer to high school students a unique opportunity to arouse in them the interest in Science in general and Chemistry in particular, to stimulate impart on them the joy of curiosity, while at the same time conferring the necessary skills for their future activity as students of higher education or in the labour market. It is also through the close contact with students that method, discipline, and intellectual honesty are transmitted and cultivated. The aim of this Project was thus to promote the study and taste interest for Chemistry, through experimental activities, fitting the Portuguese High School Education curricula, offered to students enrolled in Chemistry subjects attending the 10th, 11th and 12th grades (the latter, compulsory high school degree to apply to University Throughout 2016/17 academic year, DQ-FCT-NOVA will receive, from October to May, 1888 students visits from eleven High Schools distributed among Physical Chemistry for 10th/11th grade and of the 12th grade attending the Chemistry subject. The former are offer one single laboratory activity while the latter participate up to 10 different experimental activities. During 70 practical sessions of 2.5 hours each, with an average attendance of 27 students, the number of higher education school staff involved are 22. Each high school class is accompanied by 1 teacher, who's also proactively contributing to the design of the practical session. The session is carried out in groups of 2/3 students, and the laboratories have a capacity of 24/48 according onto classes sizes. A quality questionnaire is filled by the students in order to monitor the action. In 2015/16, 63 % of the students answered the questionnaire in which more than 90% students were very satisfied with the action. This project has already been implemented for 9 years reflecting a growing collaboration between FCT-NOVA and in High Schools in the vicinity (Setubal District). Above all, this Project allowed most of these schools to continue to motivate students to enrol in 12th grade Chemistry subject. Actually, in the first year of the initiative, many of these schools did not have enough students to open chemistry classes for the 12th grade. After the first initiative, almost all high schools have been able to maintain open 12th grade chemistry classes. On the other hand, FCT-NOVA, namely, the Applied Chemistry course, has been able to fill 100% of the numerus clausus available in the first phase of the application period, which is not the case for other higher education schools courses in Portugal for the same domain - Chemistry.

Peixoto, D, Figueiredo M, Gawande MB, Corvo MC, Vanhoenacker G, Afonso CAM, Ferreira LM, Branco PS.  2017.  Developments in the Reactivity of 2-Methylimidazolium Salts. The Journal of organic chemistry. 82:6232–6241., Number 12: American Chemical Society Abstract
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Fernandes, {AR}, Baptista {PV}.  2017.  Gene silencing using multifunctionalized gold nanoparticles for cancer therapy. Methods in Molecular Biology. 1530:319–336., United States: Humana Press Abstract

Multifunctionalized gold nanobeacons (Au-nanobeacon) combine, in a single and unique platform, targeting, detection and silencing providing an effective impact in clinics boosting cancer theranostics. Here, we describe a nano-integrated platform based on Au-nanobeacons able to detect and inhibit gene expression specifically in cancer cells. The surfaces of gold nanoparticles (AuNPs) are functionalized with targeting peptides to enhance tumor cell recognition and uptake, and with fluorescently labeled antisense DNA hairpin oligonucleotides to detect AuNPs. These oligonucleotides, upon recognition and hybridization to the target, open their structure resulting in separating apart the dye and the quencher allowing the fluorophore to emit light and to monitor the intracellular interactions of AuNPs with the target and the specific silencing of gene expression. This strategy allows inhibiting KRAS gene expression in colorectal carcinoma cell lines with no relevant toxicity for healthy fibroblasts. Importantly, this nano-integrated platform can be easily adapted to hybridize with any specific target thus providing real benefits for the diagnosis and treatment of cancer.

Cordeiro, M, Carvalho L, Silva J, Saúde L, Fernandes AR, Baptista. PV.  2017.  Gold nanobeacons for tracking gene silencing in Zebrafish. Nanomaterials. AbstractWebsite

The use of gold nanoparticles for effective gene silencing has demonstrated its potential as a tool for gene expression experiments and for the treatment of several diseases. Here, we used a gold nanobeacon designed to specifically silence the enhanced green fluorescence protein (EGFP) mRNA in embryos of a fli-EGFP transgenic zebrafish line, while simultaneously allowing the tracking and localization of the silencing events via the beacon’s emission. Fluorescence imaging measurements demonstrated a decrease of the EGFP emission with a concomitant increase in the fluorescence of the Au-nanobeacon. Furthermore, microinjection of the Au-nanobeacon led to a negligible difference in mortality and malformations in comparison to the free oligonucleotide, indicating that this system is a biocompatible platform for the administration of gene silencing moieties. Together, these data illustrate the potential of Au-nanobeacons as tools for in vivo zebrafish gene modulation with low toxicity which may be used towards any gene of interest.

Vinhas, R, Fernandes A, Baptista PV.  2017.  Gold Nanoparticles for BCR-ABL1 Gene Silencing: Improving Tyrosine Kinase Inhibitor Efficacy in Chronic Myeloid Leukemia. Molecular Therapy Nucleic Acids. 7:408-416. AbstractWebsite

Introduction of tyrosine kinase inhibitors for chronic myeloid leukemia treatment is associated with a 63% probability of maintaining a complete cytogenetic response, meaning that over 30% patients require an alternative methodology to overcome resistance, tolerance, or side effects. Considering the potential of nanotechnology in cancer treatment and the benefits of a combined therapy with imatinib, a nanoconjugate was designed to achieve BCR-ABL1 gene silencing. Gold nanoparticles were functionalized with a single-stranded DNA oligonucleotide that selectively targets the e14a2 BCR-ABL1 transcript expressed by K562 cells. This gold (Au)-nanoconjugate showed great efficacy in gene silencing that induced a significant increase in cell death. Variation of BCL-2 and BAX protein expression, an increase of caspase-3 activity, and apoptotic bodies in cells treated with the nanoconjugate demonstrate its aptitude for inducing apoptosis on K562 BCR-ABL1-expressing cells. Moreover, the combination of the silencing Au-nanoconjugate with imatinib prompted a decrease of imatinib IC50. This Au-nanoconjugate was also capable of inducing the loss of viability of imatinib-resistant K562 cells. This strategy shows that combination of Au-nanoconjugate and imatinib make K562 cells more vulnerable to chemotherapy and that the Au-nanoconjugate alone may overcome imatinib-resistance mechanisms, thus providing an effective treatment for chronic myeloid leukemia patients who exhibit drug tolerance.

Fernandes, AP, Nunes TC, Paquete CM, Salgueiro CA.  2017.  Interaction studies between periplasmic cytochromes provide insights into extracellular electron transfer pathways of Geobacter sulfurreducens. Biochemical Journal. 474:797–808., Number 5: Portland Press Limited AbstractWebsite

Accepted Manuscript online January 16, 2017.Geobacter bacteria usually prevail among other microorganisms in soils and sediments where Fe(III) reduction has a central role. This reduction is achieved by extracellular electron transfer (EET), where the electrons are exported from the interior of the cell to the surrounding environment. Periplasmic cytochromes play an important role in establishing an interface between inner and outer membrane electron transfer components. In addition, periplasmic cytochromes, in particular nanowire cytochromes that contain at least 12 haem groups, have been proposed to play a role in electron storage in conditions of an environmental lack of electron acceptors. Up to date, no redox partners have been identified in Geobacter sulfurreducens, and concomitantly, the EET and electron storage mechanisms remain unclear. In this work, NMR chemical shift perturbation measurements were used to probe for an interaction between the most abundant periplasmic cytochrome PpcA and the dodecahaem cytochrome GSU1996, one of the proposed nanowire cytochromes in G. sulfurreducens. The perturbations on the haem methyl signals of GSU1996 and PpcA showed that the proteins form a transient redox complex in an interface that involves haem groups from two different domains located at the C-terminal of GSU1996. Overall, the present study provides for the first time a clear evidence for an interaction between periplasmic cytochromes that might be relevant for the EET and electron storage pathways in G. sulfurreducens.1D, one-dimensional; CbcL, c- and b-type cytochrome for low potential; EET, extracellular electron transfer; HP, His-patch; ImcH, inner membrane c-type cytochrome; MacA, metal-reduction-associated cytochrome; NaPi, sodium phosphate; NBAF, acetate-fumarate medium; NMR, nuclear magnetic resonance; PpcA, periplasmic c-type cytochrome; SDS–PAGE, sodium dodecyl sulphate–polyacrylamide gel electrophoresis; STC, small tetrahaem cytochrome.