dos Santos, R, Figueiredo C, Viecinski AC, Pina AS, Barbosa AJM, Roque ACA.
2019.
Designed affinity ligands to capture human serum albumin. Journal of Chromatography A. 1583:88-97.
AbstractHuman serum albumin (HSA) in an important therapeutic agent and disease biomarker, with an increasing market demand. By proteins and drugs that bind to HSA as inspiration, a combinatorial library of 64 triazine-based ligands was rationally designed and screened for HSA binding at physiological conditions. Two triazine-based lead ligands (A3A2 and A6A5), presenting more than 50% HSA bound and high enrichment factors, were selected for further studies. Binding and elution conditions for HSA purification from human plasma were optimized for both ligands. The A6A5 adsorbent yielded a purified HSA sample with 98% purity at 100% recovery yield under mild binding and elution conditions.
Fernandes, TM, Morgado L, Salgueiro CA, Turner DL.
2019.
Determination of the magnetic properties and orientation of the heme axial ligands of PpcA from G. metallireducens by paramagnetic NMR. Journal of Inorganic Biochemistry. 198:110718.
AbstractThe rising interest in the use of Geobacter bacteria for biotechnological applications demands a deep understanding of how these bacteria are able to thrive in a variety of environments and perform extracellular electron transfer. The Geobacter metallireducens bacterium can couple the oxidation of a wide range of compounds to the reduction of several extracellular acceptors, including heavy metals, toxic organic compounds or electrode surfaces. The periplasmic c-type cytochrome PpcA from this bacterium is a member of a family composed of five periplasmic triheme cytochromes, which are important to bridge the electron transfer between the cytoplasm and the extracellular environment. To better understand the functional mechanism of PpcA it is essential to obtain structural data for this cytochrome. In this work, the geometry of the heme axial ligands, as well as the magnetic properties of the hemes were determined for the oxidized form of the cytochrome, using the 13C NMR chemical shifts of the heme α-substituents. The results were further compared with those previously obtained for the homologous cytochrome from Geobacter sulfurreducens. The orientations of the axial histidine planes and the magnetic properties of the hemes are conserved in both proteins. Overall, the results obtained allowed the definition of the orientation of the magnetic axes of PpcA from G. metallireducens, which will be used as constraints to assist the solution structure determination of the cytochrome in the oxidized form.
Esteves C, Santos GMC, Alves C, Palma S, Porteira AR, Filho J, HA C, Alves VD, Faustino BMM, Ferreira I, Gamboa H, Roque ACA.
2019.
Effect of film thickness in gelatin hybrid gels for artificial olfaction. Materials Today Bio. 1:-.
AbstractArtificial olfaction is a fast-growing field aiming to mimic natural olfactory systems. Olfactory systems rely on a first step of molecular recognition in which volatile organic compounds (VOCs) bind to an array of specialized olfactory proteins. This results in electrical signals transduced to the brain where pattern recognition is performed. An efficient approach in artificial olfaction combines gas-sensitive materials with dedicated signal processing and classification tools. In this work, films of gelatin hybrid gels with a single composition that change their optical properties upon binding to VOCs were studied as gas-sensing materials in a custom-built electronic nose. The effect of films thickness was studied by acquiring signals from gelatin hybrid gel films with thicknesses between 15 and 90 μm when exposed to 11 distinct VOCs. Several features were extracted from the signals obtained and then used to implement a dedicated automatic classifier based on support vector machines for data processing. As an optical signature could be associated to each VOC, the developed algorithms classified 11 distinct VOCs with high accuracy and precision (higher than 98%), in particular when using optical signals from a single film composition with 30 μm thickness. This shows an unprecedented example of soft matter in artificial olfaction, in which a single gelatin hybrid gel, and not an array of sensing materials, can provide enough information to accurately classify VOCs with small structural and functional differences.
Esteves, C, Santos GMC, Alves C, Palma SICJ, Porteira AR, Costa HMA, Alves VD, Faustino BMM, Ferreira I, Gamboa H.
2019.
Effect of film thickness in gelatine hybrid gels for artificial olfaction. Materials Today Bio. 1:100002.
Lopes, MM, Barrulas RV, Paiva TG, Ferreira ASD, Zanatta M, Corvo MC.
2019.
Molecular Interactions in Ionic Liquids: The NMR Contribution towards Tailored Solvents. Nuclear Magnetic Resonance. : IntechOpen
AbstractIonic liquids have been on the spotlight of chemical research field in the last decades. Their physical properties (low vapor pressure, thermal stability, and conductivity) and the possibility of fine tuning make them a versatile class of compounds for a wide range of applications, such as catalysis, energy, and material sciences. Ionic liquids can establish multiple intermolecular interactions with solutes such as electrostatic, van der Waals, or hydrogen bonds. The prospect of designing ionic liquid structures toward specific applications has attracted the attention to these alternative solvents. However, their rational design demands a molecular detailed view, and Nuclear Magnetic Resonance is a unique and privileged technique for this purpose, as it provides atomic resolution and at the same time enables the study of dynamic information. In this chapter, we provide an overview about the application of Nuclear Magnetic Resonance spectroscopy techniques as a methodology for the rational design of ionic liquids as solvents for small organic compounds, CO2 capture, and polymers such as cellulose focusing mainly in the last 10 years.
Kourmentza, C, Araujo D, Sevrinc C, Roma-Rodriques C, Ferreira LJ, Freitas F, Dionísio M, Baptista PV, Fernandes AR, Grandfils C, Reis MAM.
2019.
Occurrence of non-toxic bioemulsifiers during polyhydroxyalkanoate production by Pseudomonas strains valorizing crude glycerol by-product. Bioresource Technology . 281:31-40.
Marques, A, Miglietta D, Gaspar G, Baptista AC, Gaspar A, Perdigão P, Soares I, Bianchi C, Sousa D, Faustino BMM, Amaral VS, Santos T, Gonçalves AP, da Silva RC, Giorgis F, Ferreira I.
2019.
Synthesis of thermoelectric magnesium-silicide pastes for 3D printing, electrospinning and low-pressure spray. Materials for Renewable and Sustainable Energy. 8:21.
AbstractIn this work, eco-friendly magnesium-silicide (Mg2Si) semiconducting (n-type) thermoelectric pastes for building components concerning energy-harvesting devices through 3D printing, spray and electrospinning were synthetized and tested for the first time. The Mg2Si fine powders were obtained through the combination of ball milling and thermal annealing under Ar atmosphere. While the latter process was crucial for obtaining the desired Mg2Si phase, the ball milling was indispensable for homogenizing and reducing the grain size of the powders. The synthetized Mg2Si powders exhibited a large Seebeck coefficient of ~ 487 µV/K and were blended with a polymeric solution in different mass ratios to adjust the paste viscosity to the different requirements of 3D printing, electrospinning and low-pressure spray. The materials produced in every single stage of the paste synthesis were characterized by a variety of techniques that unequivocally prove their viability for producing thermoelectric parts and components. These can certainly trigger further research and development in green thermoelectric generators (TEGs) capable of adopting any form or shape with enhanced thermoelectric properties. These green TEGs are meant to compete with common toxic materials such as Bi2Te3, PbTe and CoSb that have Seebeck coefficients in the range of ~ 290–700 μV/K, similar to that of the produced Mg2Si powders and lower than that of 3D printed bulk Mg2Si pieces, measured to be ~ 4866 μV/K. Also, their measured thermal conductivities proved to be significantly lower (~ 0.2 W/mK) than that reported for Mg2Si (≥ 4 W/mK). However, it is herein demonstrated that such thermoelectric properties are not stable over time. Pressureless sintering proved to be indispensable, but difficultly achievable by long thermal annealing (even above 32 h) in inert atmosphere at 400 °C, at least for bulk Mg2Si pieces constituted by a mean grain size of 2–3 μm. Hence, for overcoming this sintering challenge and become the silicide’s extrusion viable in the production of bulk thermoelectric parts, alternative pressureless sintering methods will have to be further explored.
Queda, F, Covas G, Silva T, Santos CA, Bronze MR, Cañada FJ, Corvo MC, Filipe SR, Marques MMB.
2019.
A top-down chemo-enzymatic approach towards N-acetylglucosamine-N-acetylmuramic oligosaccharides: Chitosan as a reliable template. Carbohydrate Polymers. 224:115133.: Elsevier
AbstractAn unprecedented approach towards oligosaccharides containing N-acetylglucosamine-N-acetylmuramic (NAG-NAM) units was developed. These novel bacterial cell wall surrogates were obtained from chitosan via a top down approach involving both chemical and enzymatic reactions. The chemical modification of chitosan using a molecular clamp based strategy, allowed obtaining N-acetylglucosamine-N-acetylmuramic (NAG-NAM) containing oligomers. Intercalation of NAM residues was confirmed through the analysis of oligosaccharide fragments from enzymatic digestion and it was found that this route affords NAG-NAM containing oligosaccharides in 33% yield. These oligosaccharides mimic the carbohydrate basic skeleton of most bacterial cell surfaces. The oligosaccharides prepared are biologically relevant and will serve as a platform for further molecular recognition studies with different receptors and enzymes of both bacterial cell wall and innate immune system. This strategy combining both chemical modification and enzymatic digestion provides a novel and simple route for an easy access to bacterial cell wall fragments – biologically important targets.
Gomes, S, Querido D, Ferreira JL, Borges JB, Henriques C, Silva JC.
2019.
Using water to control electrospun Polycaprolactone fibre morphology for soft tissue engineering. Journal of Polymer Research. 26:222.
AbstractControl of the properties of electrospun polycaprolactone can be achieved by adjusting the acetic acid:water ratio used to dissolve and electrospin the polymer. In this work, we studied the effect of using up to 15 wt% water in the solvent mixture. Solution conductivity and viscosity and fibre morphology vary dramatically with water content and solution age. Two days after initial solution preparation, electrospinning yields regular fibres for a water content of 0 wt% and 5 wt%, irregular fibres for a 10 wt% water content and irregular and fused fibres for a 15 wt% water content. Fibres with the highest crystallinity (60%) were obtained from solutions containing 5 wt% water while the highest elastic modulus (8.6 ± 1.4 MPa) and tensile stress (4.3 ± 0.3 MPa) pertain to fibres obtained from solutions containing 10 wt% water. Enzymatic fibre degradation is faster the higher the water content in the precursor solution. Adhesion ratio of human foetal fibroblasts was highest on scaffolds obtained from precursor solutions containing 0 wt% water. Cell population increases for all scaffolds and populations quickly become equivalent, with no statistically significant differences between them. Cells exhibit a more extended morphology on the 5 wt% scaffold and a more compact morphology on the 0 wt% scaffold. In summary, a small water content in the solvent allows a significant control over fibre diameter, scaffold properties and the production of scaffolds that support cell adhesion and proliferation. This strategy can be used in soft tissue engineering to influence cell behaviour and the degradation rate of the scaffolds.
Chapa, M, Alexandre MF, Mendes MJ, Águas H, Fortunato E, Martins R.
2019.
All-Thin-Film Perovskite/C–Si Four-Terminal Tandems: Interlayer and Intermediate Contacts Optimization. ACS Applied Energy Materials. 2:3979-3985., Number 6
AbstractCombined perovskite/crystalline-silicon four-terminal tandem solar cells promise >30% efficiencies. Here we propose all-thin-film double-junction architectures where high-bandgap perovskite top cells are coupled to ultrathin c-Si bottom cells enhanced with light trapping. A complete optoelectronic model of the devices was developed and applied to determine the optimal intermediate layers, which are paramount to maximize the cells’ photocurrent. It was ascertained that by replacing the transparent conductive oxides by grid-based metallic contacts in the intermediate positions, the parasitic absorption is lowered by 30%. Overall, a 29.2% efficiency is determined for ∼2 um thick tandems composed of the optimized interlayers and improved with Lambertian light trapping.
Alves-Barroco, C, Roma-Rodrigues C, Balasubramanian N, Aparecida Guimarães M, Ferreira-Carvalho BT, Muthukumaran J, Nunes D, Fortunato E, Martins R, Santos-Silva T, Figueiredo AMS, Fernandes AR, Santos-Sanches I.
2019.
Biofilm development and computational screening for new putative inhibitors of a homolog of the regulatory protein BrpA in Streptococcus dysgalactiae subsp. dysgalactiae. International Journal of Medical Microbiology. 309:169-181., Number 3
AbstractStreptococcus dysgalactiae subsp. dysgalactiae (SDSD), a Lancefield group C streptococci (GCS), is a frequent cause of bovine mastitis. This highly prevalent disease is the costliest in dairy industry. Adherence and biofilm production are important factors in streptoccocal pathogenesis. We have previously described the adhesion and internalization of SDSD isolates in human cells and now we describe the biofilm production capability of this bacterium. In this work we integrated microbiology, imaging and computational methods to evaluate the biofilm production capability of SDSD isolates; to assess the presence of biofilm regulatory protein BrpA homolog in the biofilm producers; and to predict a structural model of BrpA-like protein and its binding to putative inhibitors. Our results show that SDSD isolates form biofilms on abiotic surface such as glass (hydrophilic) and polystyrene (hydrophobic), with the strongest biofilm formation observed in glass. This ability was mainly associated with a proteinaceous extracellular matrix, confirmed by the dispersion of the biofilms after proteinase K and trypsin treatment. The biofilm formation in SDSD isolates was also confirmed by confocal laser scanning microscopy (CLSM) and scanning electron microscopy (SEM). Under SEM observation, VSD16 isolate formed cell aggregates during biofilm growth while VSD9 and VSD10 formed smooth and filmy layers. We show that brpA-like gene is present and expressed in SDSD biofilm-producing isolates and its expression levels correlated with the biofilm production capability, being more expressed in the late exponential phase of planktonic growth compared to biofilm growth. Fisetin, a known biofilm inhibitor and a putative BrpA binding molecule, dramatically inhibited biofilm formation by the SDSD isolates but did not affect planktonic growth, at the tested concentrations. Homology modeling was used to predict the 3D structure of BrpA-like protein. Using high throughput virtual screening and molecular docking, we selected five ligand molecules with strong binding affinity to the hydrophobic cleft of the protein, making them potential inhibitor candidates of the SDSD BrpA-like protein. These results warrant further investigations for developing novel strategies for SDSD anti-biofilm therapy.