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1997
Pina, F, Melo MJ, Maestri M, Ballardini R, Balzani V.  1997.  Photochromism of 4'-methoxyflavylium perchlorate. A ''write-lock-read-unlock-erase'' molecular switching system. Journal of the American Chemical Society. 119:5556-5561., Number 24 AbstractWebsite
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1996
Marques, F, Duarte RO, Moura JJ, Bicho MP.  1996.  Conversion of adrenaline to indolic derivatives by the human erythrocyte plasma membrane, Sep-Oct. Biol Signals. 5:275-82., Number 5 AbstractWebsite

The conversion of adrenaline to aminochromes by the human erythrocyte plasma membranes at pH 9.5 was shown to be a complex reaction that proceeded at least by two distinct phases. The first one, corresponding to the formation of adrenochrome, is catalyzed in the presence of the membranes, suggesting the involvement of an enzyme-mediated process. Active oxygen species were identified as intermediates during this phase. Oxygen radical scavengers (catalase and superoxide dismutase) suggested H2O2 and O2- involvement. Adrenochrome formation was stimulated by NADH indicating the participation of another enzyme (NADH dehydrogenase) which is known to be present in the human erythrocyte plasma membrane. The second phase, corresponding to the disappearance of adrenochrome, is also stimulated by NADH and inhibited in the presence of the membranes. In this reaction, adrenochrome is converted to aminochromes via adrenochrome semiquinone. The formation of radical species is demonstrated by EPR spectroscopy. The results led to the proposal of a mechanism for the formation of adrenochrome and other oxidation products from adrenaline.

Moniz, A, Oliveira P, Bento S.  1996.  Hibrida{\c c}ão de um sistema flex{\'ıvel de produ{\c c}ão: possibilidades de aplica{\c c}ão do conceito de antropocentrismo[Hybridation of a flexible production system: possibilities for an application of t, Feb. , Number 7193: University Library of Munich, Germany Abstract

Today one can understand the wider use of the anthropocentrism concept applied to the production architectures, emerging a new value of the intuitive capacities and human knowledge in the optimization and flexibilization of the manufacturing processes. Having a flexible production and assembly system architecture that exists at UNINOVA-CRI, we will try to develop some exploratory hypothesis on the applicability of the hybridizing concept and its repercussions in the definition of working places, in their organization and formation of working teams. We will underline some aspects that should be taken into consideration when are design such systems, including some ergonomical aspects.

Moniz, A, Oliveira P, Bento S.  1996.  {Hibridação de um sistema flexível de produção: possibilidades de aplicação do conceito de antropocentrismo[Hybridation of a flexible production system: possibilities for an application of the anth}, Feb. , Number 7193: University Library of Munich, Germany Abstract

Today one can understand the wider use of the anthropocentrism concept applied to the production architectures, emerging a new value of the intuitive capacities and human knowledge in the optimization and flexibilization of the manufacturing processes. Having a flexible production and assembly system architecture that exists at UNINOVA-CRI, we will try to develop some exploratory hypothesis on the applicability of the hybridizing concept and its repercussions in the definition of working places, in their organization and formation of working teams. We will underline some aspects that should be taken into consideration when are design such systems, including some ergonomical aspects.

Macedo, AL, Besson S, Moreno C, Fauque G, Moura JJ, Moura I.  1996.  Characterization of a 7Fe ferredoxin isolated from the marine denitrifier Pseudomonas nautica strain 617: spectroscopic and electrochemical studies, Dec 13. Biochem Biophys Res Commun. 229:524-30., Number 2 AbstractWebsite

A 7Fe ferredoxin, isolated from the marine denitrifier Pseudomonas nautica strain 617, was characterized. The NH2-terminal sequence analysis, performed until residue number 56, shows a high similarity with the 7Fe ferredoxins isolated from Azotobacter vinelandii, Pseudomonas putida, and Pseudomonas stutzeri. EPR and NMR spectroscopies identify the presence of both [3Fe-4S] and [4Fe-4S] clusters, with cysteinyl coordination. The electrochemical studies on [Fe-S] clusters show that a fast diffusion-dominated electron transfer, promoted by Mg(II), takes place between the ferredoxin and the glassy carbon electrode. Square wave voltammetry studies gave access to the electrosynthesis of a 4Fe center formed within the [3Fe-4S] core. The [3Fe-4S] cluster exhibited two reduction potentials at -175 and -680 +/- 10 mV and the [4Fe-4S] cluster was characterized by an unusually low reduction potential of -715 +/- 10 mV, at pH 7.6

Pereira, AS, Franco R, Feio MJ, Pinto C, Lampreia J, Reis MA, Calvete J, Moura I, Beech I, Lino AR, Moura JJ.  1996.  Characterization of representative enzymes from a sulfate reducing bacterium implicated in the corrosion of steel, Apr 16. Biochem Biophys Res Commun. 221:414-21., Number 2 AbstractWebsite

This communication reports the isolation, purification and characterization of key enzymes involved in dissimilatory sulfate reduction of a sulfate reducing bacterium classified as Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) (Ddd NJ). The chosen strain, originally recovered from a corroding cast iron heat exchanger, was grown in large scale batch cultures. Physico-chemical and spectroscopic studies of the purified enzymes were carried out. These analyses revealed a high degree of similarity between proteins isolated from the DddNJ strain and the homologous proteins obtained from Desulfomicrobium baculatus Norway 4. In view of the results obtained, taxonomic reclassification of Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) into Desulfomicrobium baculatus (New Jersey) is proposed.

Pina, F, Benedito L, Melo MJ, Parola AJ, Bernardo A.  1996.  Photochemistry of 3,4'-dimethoxy-7-hydroxyflavylium chloride - Photochromism and excited-state proton transfer, 1996. Journal of the Chemical Society-Faraday Transactions. 92:1693-1699. AbstractWebsite

The synthetic compound 3,4'-dimethoxy-7-hydroxyflavylium chloride gives rise, in aqueous solution at moderately acidic pH, to a pH-dependent equilibrium between the flavylium cation, hemiacetal, (Z)-chalcone and a small amount of quinonoidal base. The distribution, as a function of pH, of the molar fractions of the several species present in solution have been calculated on the basis of H-1 NMR and pH jump experiments monitored by stopped-flow and conventional UV-VIS spectrophotometry, and highperformance liquid chromatography (HPLC). The compound shows interesting photochemical properties: (i) at pH 4.0 it presents a photochromic effect that converts (Z)-chalcone into hemiacetal, the reaction being reversible in the dark and (ii) excited-state proton transfer is observed between the flavylium cation and quinonoidal base. An appropriate formalism to quantify the experimental results has been developed. The formalism allows determination of the pH-dependent molar fraction distribution of the several anthocyanin forms present at equilibrium, as well as predicting the distribution of the molar fractions prior to equilibrium.

Parola, AJ, Pina F, Ferreira E, Maestri M, Balzani V.  1996.  Photoinduced electron- and energy-transfer processes of biacetyl imprisoned in a hemicarcerand, 1996. Journal of the American Chemical Society. 118:11610-11616. AbstractWebsite

The energy- and electron-transfer quenching processes of the lowest triplet excited state of biacetyl (2,3-butanedione) imprisoned in a hemicarcerand have been systematically investigated in CH2Cl2 solution at room temperature. Twenty potential quenchers have been used, including ten triplet energy accepters (mostly, aromatic hydrocarbons) and nine electron donors (mostly, aromatic amines). Bimolecular rate constants for the quenching processes were obtained by Stern-Volmer analysis and compared with those found for the quenching of free biacetyl. In the electron-transfer processes, aromatic amines with oxidation potential from +0.015 V (N,N,N',N'-tetramethyl-p-phenylenediamine) to +0.83 V (diphenylamine) quench free biacetyl at the diffusion-controlled limit, whereas for imprisoned biacetyl the rate constant decreases (roughly in a linear manner) from 4.0 x 10(8) to 1.2 x 10(5) M(-1) s(-1) As far as energy-transfer is concerned, the rate constant for the quenching of free biacetyl increases with decreasing Delta G degrees and reaches the diffusion-controlled plateau value (k(q) similar to 10(10) M(-1) s(-1)) for Delta G degrees similar to 0.1 eV, whereas for imprisoned biacetyl a scattered, bell-shaped log k(q) vs Delta G degrees plot is obtained, with a maximum value (similar to 10(6) M(-1) s(-1)) much below the diffusion-controlled limit. The results obtained show that the walls of the hemicarcerand allow only very weak electronic interaction between incarcerated triplet biacetyl and external quenchers. A brief discussion of the results obtained in the light of current energy- and electron-transfer theories is presented.

Batista, AG, English MJ.  1996.  A Multiresolution Wavelet Method for Charaterization of Ventricular Late Potentials. Computers in Cardiology. Abstract

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Pereira, AS, Franco R, Feio MJ, Pinto C, Lampreia J, Reis MA, Calvete J, Moura I, Beech I, Lino AR, Moura JJG.  1996.  Characterization of representative enzymes from a sulfate reducing bacterium implicated in the corrosion of steel. Biochemical And Biophysical Research Communications. {221}:{414-421}., Number {2}, 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495: ACADEMIC PRESS INC JNL-COMP SUBSCRIPTIONS Abstract

This communication reports the isolation, purification and characterization of key enzymes involved in dissimilatory sulfate reduction of a sulfate reducing bacterium classified as Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) (Ddd NJ). The chosen strain, originally recovered from a corroding cast iron heat exchanger, was grown in large scale batch cultures. Physico-chemical and spectroscopic studies of the purified enzymes were carried out. These analyses revealed a high degree of similarity between proteins isolated from the DddNJ strain and the homologous proteins obtained from Desulfomicrobium baculatus Norway 4. In view of the results obtained, taxonomic reclassification of Desulfovibrio desulfuricans subspecies desulfuricans New Jersey (NCIMB 8313) into Desulfomicrobium baculatus (New Jersey) is proposed. (C) 1996 Academic Press, Inc.

Batista, AG, English MJ.  1996.  A Multiresolution Wavelet Method for Charaterization of Ventricular Late Potentials. Computers in Cardiology. Abstract
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Melo, MJ, Bernardo MA, Melo EC, Pina F.  1996.  Shape of acid-base fluorescence emission titration curves in the presence of buffer and quenching effects. Journal of the Chemical Society-Faraday Transactions. 92:957-968., Number 6 AbstractWebsite
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Bernardo, MA, Guerrero JA, Garciaespana E, Luis SV, Llinares JM, Pina F, Ramirez JA, Soriano C.  1996.  Thermodynamic, NMR and photochemical study on the acid-base behaviour of N,N'-dibenzylated polyamines and on their interaction with hexacyanocobaltate(III). Journal of the Chemical Society-Perkin Transactions 2. :2335-2342., Number 11 AbstractWebsite
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1995
Zhelyaskov, V, Yue KT, Legall J, Barata BA, Moura JJ.  1995.  Resonance Raman study on the iron-sulfur centers of Desulfovibrio gigas aldehyde oxidoreductase, Oct 25. Biochim Biophys Acta. 1252:300-4., Number 2 AbstractWebsite

Resonance Raman spectra of the molybdenum containing aldehyde oxidoreductase from Desulfovibrio gigas were recorded at liquid nitrogen temperature with various excitation wavelengths. The spectra indicate that all the iron atoms are organised in [2Fe-2S] type centers consistent with cysteine ligations. No vibrational modes involving molybdenum could be clearly identified. The features between 280 and 420 cm-1 are similar but different from those of typical plant ferredoxin-like [2Fe-2S] cluster. The data are consistent with the presence of a plant ferredoxin-like cluster (center I) and a unique [2Fe-2S] cluster (center II), as suggested by other spectroscopic studies. The Raman features of center II are different from those of other [2Fe-2S] clusters in proteins. In addition, a strong peak at ca. 683 cm-1, which is not present in other [2Fe-2S] clusters in proteins, was observed with purple excitation (406.7-413.1 nm). The peak is assigned to enhanced cysteinyl C-S stretching in center II, suggesting a novel geometry for this center.

Bursakov, S, Liu MY, Payne WJ, Legall J, Moura I, Moura JJ.  1995.  Isolation and preliminary characterization of a soluble nitrate reductase from the sulfate reducing organism Desulfovibrio desulfuricans ATCC 27774, Feb. Anaerobe. 1:55-60., Number 1 AbstractWebsite

Desulfovibrio desulfuricans ATCC 27774 is a sulfate reducer that can adapt to nitrate respiration, inducing the enzymes required to utilize this alternative metabolic pathway. Nitrite reductase from this organism has been previously isolated and characterized, but no information was available on the enzyme involved in the reduction of nitrate. This is the first report of purification to homogeneity of a nitrate reductase from a sulfate reducing organism, thus completing the enzymatic system required to convert nitrate (through nitrite) to ammonia. D. desulfuricans nitrate reductase is a monomeric (circa 70 kDa) periplasmic enzyme with a specific activity of 5.4 K(m) for nitrate was estimated to be 20 microM. EPR signals due to one [4Fe-4S] cluster and Mo(V) were identified in dithionite reduced samples and in the presence of nitrate.

Besson, S, Carneiro C, Moura JJ, Moura I, Fauque G.  1995.  A cytochrome cd1-type nitrite reductase isolated from the marine denitrifier Pseudomonas nautica 617: purification and characterization, Aug. Anaerobe. 1:219-26., Number 4 AbstractWebsite

Nitrite reductase (cytochrome cd1) was purified to electrophoretic homogeneity from the soluble extract of the marine denitrifying bacterium Pseudomonas nautica strain 617. Cells were anaerobically grown with 10 mM nitrate as final electron acceptor. The soluble fraction was purified by four successive chromatographic steps and the purest cytochrome cd1 exhibited an A280 nm(oxidized)/A410nm(oxidized) coefficient of 0.90. In the course of purification, cytochrome cd1 specific activity presented a maximum value of 0.048 units/mg of protein. This periplasmic enzyme is a homodimer and each 60 kDa subunit contains one heme c and one heme d1 as prosthetic moieties, both in a low spin state. Redox potentials of hemes c and d1 were determined at three different pH values (6.6, 7.6 and 8.6) and did not show any pH dependence. The first 20 amino acids of the NH2-terminal region of the protein were identified and the sequence showed 45% identity with the corresponding region of Pseudomonas aeruginosa nitrite reductase but no homology to Pseudomonas stutzeri and Paracoccus denitrificans enzymes. Spectroscopic properties of Pseudomonas nautica 617 cytochrome cd1 in the ultraviolet-visible range and in electron paramagnetic resonance are described. The formation of a heme d1 -nitric-oxide complex as an intermediate of nitrite reduction was demonstrated by electron paramagnetic resonance experiments.

Branco, PS, Chiarelli MP, LAY JO, BELAND FA.  1995.  LOW-ENERGY TANDEM MASS-SPECTROMETRY OF DEOXYNUCLEOSIDE ADDUCTS OF POLYCYCLIC AROMATIC HYDROCARBON DIHYDRODIOL-EPOXIDES, APR. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 6:248-256., Number 4 Abstract
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Bernardo, MA, Parola AJ, Pina F, Garciaespana E, Marcelino V, Luis SV, Miravet JF.  1995.  STEADY-STATE FLUORESCENCE EMISSION STUDIES ON POLYAZACYCLOPHANE MACROCYCLIC RECEPTORS AND ON THEIR ADDUCTS WITH HEXACYANOCOBALTATE(III), 1995. Journal of the Chemical Society-Dalton Transactions. :993-997. AbstractWebsite

The steady-state fluorescence emission spectra of the azacyclophanes 2,5,8,11-tetraaza[12] paracyclophane (L(1)), 2,6,9,13-tetraaza[14]paracyclophane (L(2)), 14,15,17,18-tetramethyl-2,5,8,11-tetraaza-[12]paracyclophane (L(3)) and 16,17,19,20-tetramethyl-2,6,9,13-tetraaza[14]paracyclophane (L(4)) as a function of pH have been measured. The fully protonated species of each cyclophane gives the highest fluorescence-emission quantum yield. The shapes of the titration curves have been explained by the existence of an electron-transfer quenching effect from a non-protonated amine to the benzene chromophore. This effect is greater for macrocycles in which the first deprotonated amine group is closer to the benzene. The association constants for the interaction of the four fully protonated macrocycles with K-3[Co(CN)(6)] have been measured either by potentiometry or from fluorescence-emission measurements, and increase in the order L(3) approximate to L(4) < L(1) approximate to L(2). The photoaquation quantum yields of K-3[Co(CN)(6)] have been measured in the presence of the macrocycles L(1) and L(2). and indicate that three of the CN nitrogens of the complex are involved in adduct formation with the fully protonated macrocycles, as supported by molecular modelling.

Pina, F, Parola AJ, Ferreira E, Maestri M, Armaroli N, Ballardini R, Balzani V.  1995.  SUPRAMOLECULAR PHOTOCHEMISTRY AND PHOTOPHYSICS - BIACETYL IMPRISONED IN A HEMICARCERAND, 1995. Journal of Physical Chemistry. 99:12701-12703. AbstractWebsite

When biacetyl is imprisoned into Cram's hemicarcerand 1, its absorption, fluorescence, and phosphorescence maxima are red shifted compared to the values obtained for solutions of free biacetyl in any solvent. Furthermore, the lifetime of the T-1 excited state of imprisoned biacetyl is unaffected by solvent nature and presence of dioxygen. These results show that inclusion into the hemicarcerand (i) shields biacetyl from interaction with the solvent molecules and (ii) prevents deactivation of its long-lived T-1 excited state by energy transfer to dioxygen. The perturbation provided by the cavity on the spectroscopic properties of biacetyl is much smaller than that provided by even the most ''innocent'' solvent. The consequent picture is that of a biacetyl molecule which is contained in a not-too-tight cavity where no specific host-guest interaction takes place. The peculiar spectroscopic and excited-state behavior of biacetyl imprisoned in hemicarcerand 1 supports Cram's view that the inner phase of carcerands and hemicarcerands is to be considered as a new phase of matter.

FIGUEIREDO, P, Pina F.  1995.  Co-pigmentation of anthocyanins through the formation of ion-pairs. Polyphenols 94. 69(Brouillard, R, Jay, M., Scalbert, A., Eds.).:205-206. Abstract
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Saraiva, LM, Besson S, Moura I, Fauque G.  1995.  Purification and Preliminary Characterization of Three C-Type Cytochromes from Pseudomonas Nautica Strain 617. Biochemical and Biophysical Research Communications. 212:1088-1097., Number 3 AbstractWebsite
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Besson, S, Carneiro C, Moura JJG, Moura I, Fauque G.  1995.  Spectroscopic properties of the cytochrome CD1 from the marine denitrifier Pseudomonas nautica. Spectroscopy of Biological Molecules. (Merlin, J. C. Turrell S. Huvenne J. P., Ed.).:263-264. AbstractWebsite
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1994
Parola, AJ, Pina F, Maestri M, Armaroli N, Balzani V.  1994.  SUPRAMOLECULAR PHOTOCHEMISTRY AND PHOTOPHYSICS - 9-CYANOANTHRACENE IMPRISONED IN A HEMICARCERAND, 1994. New Journal of Chemistry. 18:659-661. AbstractWebsite

The absorption and excited state properties of 9-cyanoanthracene are strongly modified upon inclusion into an octaimine hemicarcerand; the walls of the host do not transfer excitation to the guest and quench its fluorescent excited state.

Moura, JJ, Barata BA.  1994.  Aldehyde oxidoreductases and other molybdenum containing enzymes. Methods Enzymol. 243:24-42. AbstractWebsite
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Saraiva, LM, Besson S, Fauque G, Moura I.  1994.  Characterization of the Dihemic Cytochrome C549 from the Marine Denitrifying Bacterium Pseudomonas nautica 617. Biochemical and Biophysical Research Communications. 199:1289-1296., Number 3 AbstractWebsite
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