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2011
Carneiro, M, Batista AG, Ortigueira MD.  2011.  EEG artifact removal with ICA analysis. Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011. Abstract
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Cardoso, NV, Batista AG, Ortigueira MD.  2011.  EEG Features Extraction for Sleep Classification and Spindle Detection. Doctoral Conference on Computing on Computing, Electrical and Industrial Systems. Abstract
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Branco, A, Branco LC, Pina F.  2011.  Electrochromic and magnetic ionic liquids. Chemical Communications. 47:2300-2302., Number 8 AbstractWebsite
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Gomes, AC, Bruno SM, Gago S, Lopes RP, Machado DA, Carminatti AP, Valente AA, Pillinger M, Goncalves IS.  2011.  Epoxidation of cyclooctene using soluble or MCM-41-supported molybdenum tetracarbonyl-pyridylimine complexes as catalyst precursors. Journal of Organometallic Chemistry. 696:3543-3550., Number 22 AbstractWebsite
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Rosa, JP, Lima JC, Baptista PV.  2011.  Experimental photophysical characterization of fluorophores in the vicinity of gold nanoparticles. Nanotechnology. 22, Number 41 Abstract
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Rosa, {JP }, Lima {JC }, Baptista {PV }.  2011.  Experimental photophysical characterization of fluorophores in the vicinity of gold nanoparticles. Nanotechnology. 22, Number 41: IOP Publishing Abstract

We propose an experimental-based tool for dealing with fluorescence modulation close to nanoparticles for application in studies of fluorophores in the vicinity of gold nanoparticles (AuNPs), typically addressed via theoretical models. We performed a photophysical characterization of fluorophores in the vicinity of AuNPs, showing that correct Phi(F) determination suffers from a local pH effect, and address the observed radiative enhancement. Our approach is based on the experimental assurance that the reference fluorophores are in the same optical conditions as those of the AuNP-fluorophore conjugates. We demonstrate the relevance for introducing corrections for the inner filter effect and the reabsorption of the emitted light caused by AuNPs. The proposed approach could circumvent the need for theoretical based corrections and allow for more accurate determination of fluorescence emission in the vicinity of gold nanoparticles.

Ferraz, R, Branco LC, Prudencio C, Noronha JP, Petrovski Z.  2011.  Ionic Liquids as Active Pharmaceutical Ingredients. Chemmedchem. 6:975-985., Number 6 AbstractWebsite
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Machado, A, Redol P, Branco L, Vilarigues M.  2011.  Ionic liquids for medieval stained glass cleaning: a new frontier. ICOM-CC Lisbon. :1-9. Abstract
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Duarte, FJS, Bakalova SM, Cabrita EJ, Santos GA.  2011.  Lewis Acid Catalyzed Reactions of Chiral Imidazolidinones and Oxazolidinones: Insights on the Role of the Catalyst. Journal of Organic Chemistry. 76:6997-7004. Abstract

The mechanism proposed by Evans to justify the selectivity obtained in Lewis acid catalyzed Diels-Alder reactions of cyclopentadiene with acyloxazolidinones has been generalized and used in the rationalization of selectivities obtained in many other systems. However, we recently proposed an alternative mechanism, on the basis of open-chain mono- and bicomplexes, that avoids the need for chelates and explains the selectivity obtained by Evans. In this manuscript we apply our proposal to the catalyzed conjugated addition of amines to acylimidazolidinones, reported by Cardillo, and we clearly show that aluminum chelates are not involved in the reaction, as they induce no selectivity, while Cardillo observed high experimental selectivities. Our data equally show that bicomplexes with carbonyl parallel orientation, proposed by Cardillo to justify the experimental selectivity with nonchelating Lewis acids, indeed induce the opposite selectivity and have also to be dismissed. On the other hand, our mechanistic proposal allows for the full rationalization of the data obtained by Cardillo with aluminum, boron, or zinc Lewis acids and supports our previous proposal on DA cycloadditions of dienes to Evans chiral auxiliary derivatives.

Baptista, {PV}, c}alo Dória G{\c, Quaresma P, Cavadas M, Neves {CS }, Gomes I, Eaton P, Pereira E, Franco R.  2011.  Nanoparticles in molecular diagnostics. Nanoparticles in Translational Science and Medicine. (Antonio Villaverde, Ed.).:427–488., Netherlands: Elsevier Abstract

The aim of this chapter is to provide an overview of the available and emerging molecular diagnostic methods that take advantage of the unique nanoscale properties of nanoparticles (NPs) to increase the sensitivity, detection capabilities, ease of operation, and portability of the biodetection assemblies. The focus will be on noble metal NPs, especially gold NPs, fluorescent NPs, especially quantum dots, and magnetic NPs, the three main players in the development of probes for biological sensing. The chapter is divided into four sections: a first section covering the unique physicochemical properties of NPs of relevance for their utilization in molecular diagnostics; the second section dedicated to applications of NPs in molecular diagnostics by nucleic acid detection; and the third section with major applications of NPs in the area of immunoassays. Finally, a concluding section highlights the most promising advances in the area and presents future perspectives.

Rosatella, AA, Afonso CAM, Branco LC.  2011.  Oxidation of Cyclohexene to trans-1,2-Cyclohexanediol Promoted by p-Toluenesulfonic Acid without Organic Solvents. Journal of Chemical Education. 88:1002-1003., Number 7 AbstractWebsite
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Gago, S, Bruno SM, Queiros DC, Valente AA, Goncalves IS, Pillinger M.  2011.  Oxidation of Ethylbenzene in the Presence of an MCM-41-Supported or Ionic Liquid-Standing Bischlorocopper(II) Complex. Catalysis Letters. 141:1009-1017., Number 7 AbstractWebsite
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Bras, JLA, Correia MAS, Romao MJ, Prates JAM, Fontes CMGA, Najmudin S.  2011.  Purification, crystallization and preliminary X-ray characterization of the pentamodular arabinoxylanase CtXyl5A from Clostridium thermocellum. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 67:833-836. AbstractWebsite
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Almeida, R, Ortigueira MD, Batista AG, Ktonas P.  2011.  Sleep Spindles: Decomposition, Parameterization and Applications. 19th IEEE Conference on Signal Processing and Communications Applications. Abstract
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Bras, JLA, Cartmell A, Carvalho ALM, Verze G, Bayer EA, Vazana Y, Correia MAS, Prates JAM, Ratnaparkhe S, Boraston AB, Romao MJ, Fontes CMGA, Gilbert HJ.  2011.  Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 108:5237-5242., Number 13 AbstractWebsite
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Neves, P, Gago S, Balula SS, Lopes AD, Valente AA, Cunha-Silva L, Almeida Paz FA, Pillinger M, Rocha J, Silva CM, Goncalves IS.  2011.  Synthesis and Catalytic Properties of Molybdenum(VI) Complexes with Tris(3,5-dimethyl-1-pyrazolyl)methane. Inorganic Chemistry. 50:3490-3500., Number 8 AbstractWebsite
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Gawande, MB, Branco PS, Parghi K, Shrikhande JJ, Pandey RK, Ghumman CAA, Bundaleski N, Teodoro OMND, Jayaram RV.  2011.  Synthesis and characterization of versatile MgO-ZrO2 mixed metal oxide nanoparticles and their applications. CATALYSIS SCIENCE & TECHNOLOGY. 1:1653-1664., Number 9 Abstract
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Santos-Silva, T, Mukhopadhyay A, Seixas JD, Bernardes GJL, Romao CC, Romao MJ.  2011.  Towards Improved Therapeutic CORMs: Understanding the Reactivity of CORM-3 with Proteins. Current Medicinal Chemistry. 18:3361-3366., Number 22 AbstractWebsite
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Baltazar, P, Vasconcelos VT, Vieira HT.  2011.  Typing Dynamic Roles in Multiparty Interaction. Simpósio de Informática (INForum). Abstract
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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P\{$\backslash$textendash\}79400P\{$\backslash$textendash\}10. Abstract

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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. Proc. SPIE. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P–79400P–10. Abstract

Today there is a strong interest in the scientific and industrial community concerning the use of biopolymers for electronic applications, mainly driven by low-cost and disposable applications. Adding to this interest, we must recognize the importance of the wireless auto sustained and low energy consumption electronics dream. This dream can be fulfilled by cellulose paper, the lightest and the cheapest known substrate material, as well as the Earth's major biopolymer and of tremendous global economic importance. The recent developments of oxide thin film transistors and in particular the production of paper transistors at room temperature had contributed, as a first step, for the development of disposable, low cost and flexible electronic devices. To fulfil the wireless demand, it is necessary to prove the concept of self powered devices. In the case of paper electronics, this implies demonstrating the idea of self regenerated thin film paper batteries and its integration with other electronic components. Here we demonstrate this possibility by actuating the gate of paper transistors by paper batteries. We found that when a sheet of cellulose paper is covered in both faces with thin layers of opposite electrochemical potential materials, a voltage appears between both electrodes -paper battery, which is also self-regenerated. The value of the potential depends upon the materials used for anode and cathode. An open circuit voltage of 0.5V and a short-circuit current density of 1$μ$A/cm2 were obtained in the simplest structure produced (Cu/paper/Al). For actuating the gate of the paper transistor, seven paper batteries were integrated in the same substrate in series, supplying a voltage of 3.4V. This allows proper ON/OFF control of the paper transistor. Apart from that transparent conductive oxides can be also used as cathode/anode materials allowing so the production of thin film batteries with transparent electrodes compatible with flexible, invisible, self powered and wireless electronics.

Martins, R, Nathan A, Barros R, Pereira L\'ıs, Barquinha P, Correia N, Costa R, Ahnood A, Ferreira I, Fortunato E.  2011.  {Complementary metal oxide semiconductor technology with and on paper.}. Advanced materials (Deerfield Beach, Fla.). 23:4491–6., Number 39 AbstractWebsite
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Boavida, N, Moretto SM.  2011.  {Innovation assessment in a local branch of a rail transport manufacture industry - A case study}. , Number 04/2011: Universidade Nova de Lisboa, IET/CICS.NOVA-Interdisciplinary Centre on Social Sciences, Faculty of Science and Technology Abstract

In the context of the revitalization of the Portuguese railway sector with the construction of the high-speed railway network, the working paper proposes an analysis of the results found from the application of an innovation scoring to the Portuguese branch of a global multinational in the railway business. The aim of this exercise is to learn on the innovation management flow between the global corporation and the local branch in Portugal. It also aims to assess the degree of local innovation multinationals generate in view of such type of mega public investments. The working paper is structured in five chapters. In chapter one introduces the innovation scoring tool, instrument of work; chapter two covers the methodology used; the chapter tree presents the case study, subject of research; chapter four presents the findings; and chapter 5 closes with concluding remarks.

2010
Veigas, B, Machado D, Perdigão J, Portugal I, Couto I, Viveiros M, Baptista {PV}.  2010.  Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis, oct. Nanotechnology. 21, Number 41: IOP Publishing Abstract

Tuberculosis (TB) is one of the leading causes of infection in humans, causing high morbility and mortality all over the world. The rate of new cases of multidrug resistant tuberculosis (MDRTB) continues to increase, and since these infections are very difficult to manage, they constitute a serious health problem. In most cases, drug resistance in Mycobacterium tuberculosis has been related to mutations in several loci within the pathogen's genome. The development of fast, cheap and simple screening methodologies would be of paramount relevance for the early detection of these mutations, essential for the timely and effective diagnosis and management of MDRTB patients. The use of gold nanoparticles derivatized with thiol-modified oligonucleotides (Au-nanoprobes) has led to new approaches in molecular diagnostics. Based on the differential non-cross-linking aggregation of Au-nanoprobes, we were able to develop a colorimetric method for the detection of specific sequences and to apply this approach to pathogen identification and single base mutations/single nucleotide polymorphisms (SNP) discrimination. Here we report on the development of Au-nanoprobes for the specific identification of SNPs within the beta subunit of the RNA polymerase (rpoB locus), responsible for resistance to rifampicin in over 95% of rifampicin resistant M. tuberculosis strains.

Batalha, IL, Hussain A, Roque ACA.  2010.  Gum Arabic coated magnetic nanoparticles with affinity ligands specific for antibodies, oct. Journal of Molecular Recognition. 23:462–471., Number 5 AbstractWebsite

A novel magnetic support based on gum Arabic {(GA)} coated iron oxide magnetic nanoparticles {(MNP)} has been endowed with affinity properties towards immunoglobulin G {(IgG)} molecules. The success of the in situ triazine ligand synthesis was confirmed by fluorescence assays. Two synthetic ligands previously developed for binding to {IgG}, named as ligand 22/8 (artificial Protein A) and ligand 8/7 (artificial Protein L) were immobilized on to {MNPs} coated with {GA} {(MNP\_GA).} The dimension of the particles core was not affected by the surface functionalization with {GA} and triazine ligands. The hydrodynamic diameters of the magnetic supports indicate that the coupling of {GA} leads to the formation of larger agglomerates of particles with about 1 microm, but the introduction of the triazine ligands leads to a decrease on {MNPs} size. The non-functionalized {MNP\_GA} bound 28 mg {IgG/g}, two times less than bare {MNP} (60 mg {IgG/g).} {MNP\_GA} modified with ligand 22/8 bound 133 mg {IgG/g} support, twice higher than the value obtained for ligand 8/7 magnetic adsorbents (65 mg/g). Supports modified with ligand 22/8 were selected to study the adsorption and the elution of {IgG.} The adsorption of human {IgG} on this support followed a Langmuir behavior with a Q(máx) of 344 mg {IgG/g} support and K(a) of 1.5 x 10(5) M. The studies on different elution conditions indicated that although the 0.05 M citrate buffer {(pH} 3) presented good recovery yields (elution 64% of bound protein), there was occurrence of iron leaching at this acidic {pH.} Therefore, a potential alternative would be to elute bound protein with a 0.05 M {glycine-NaOH} {(pH} 11) buffer.

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