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2017
Vinhas, R, Fernandes {AR}, Baptista {PV}.  2017.  Gold Nanoparticles for BCR-ABL1 Gene Silencing: Improving Tyrosine Kinase Inhibitor Efficacy in Chronic Myeloid Leukemia, jun. Molecular Therapy - Nucleic Acids. 7:408–416.: Elsevier Abstract

Introduction of tyrosine kinase inhibitors for chronic myeloid leukemia treatment is associated with a 63% probability of maintaining a complete cytogenetic response, meaning that over 30% patients require an alternative methodology to overcome resistance, tolerance, or side effects. Considering the potential of nanotechnology in cancer treatment and the benefits of a combined therapy with imatinib, a nanoconjugate was designed to achieve BCR-ABL1 gene silencing. Gold nanoparticles were functionalized with a single-stranded DNA oligonucleotide that selectively targets the e14a2 BCR-ABL1 transcript expressed by K562 cells. This gold (Au)-nanoconjugate showed great efficacy in gene silencing that induced a significant increase in cell death. Variation of BCL-2 and BAX protein expression, an increase of caspase-3 activity, and apoptotic bodies in cells treated with the nanoconjugate demonstrate its aptitude for inducing apoptosis on K562 BCR-ABL1-expressing cells. Moreover, the combination of the silencing Au-nanoconjugate with imatinib prompted a decrease of imatinib IC50. This Au-nanoconjugate was also capable of inducing the loss of viability of imatinib-resistant K562 cells. This strategy shows that combination of Au-nanoconjugate and imatinib make K562 cells more vulnerable to chemotherapy and that the Au-nanoconjugate alone may overcome imatinib-resistance mechanisms, thus providing an effective treatment for chronic myeloid leukemia patients who exhibit drug tolerance.

Coelho, B, Veigas B, Fortunato E, Martins R, Águas H, Igreja R, Baptista {PV}.  2017.  Digital microfluidics for nucleic acid amplification, jul. Sensors. 17, Number 7: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Digital Microfluidics (DMF) has emerged as a disruptive methodology for the control and manipulation of low volume droplets. In DMF, each droplet acts as a single reactor, which allows for extensive multiparallelization of biological and chemical reactions at a much smaller scale. DMF devices open entirely new and promising pathways for multiplex analysis and reaction occurring in a miniaturized format, thus allowing for healthcare decentralization from major laboratories to point-of-care with accurate, robust and inexpensive molecular diagnostics. Here, we shall focus on DMF platforms specifically designed for nucleic acid amplification, which is key for molecular diagnostics of several diseases and conditions, from pathogen identification to cancer mutations detection. Particular attention will be given to the device architecture, materials and nucleic acid amplification applications in validated settings.

Cordeiro, M, Carvalho L, Silva J, Saúde L, Fernandes {AR}, Baptista {PV}.  2017.  Gold nanobeacons for tracking gene silencing in zebrafish, jan. Nanomaterials. 7, Number 1: MDPI AG Abstract

The use of gold nanoparticles for effective gene silencing has demonstrated its potential as a tool for gene expression experiments and for the treatment of several diseases. Here, we used a gold nanobeacon designed to specifically silence the enhanced green fluorescence protein (EGFP) mRNA in embryos of a fli-EGFP transgenic zebrafish line, while simultaneously allowing the tracking and localization of the silencing events via the beacon’s emission. Fluorescence imaging measurements demonstrated a decrease of the EGFP emission with a concomitant increase in the fluorescence of the Au-nanobeacon. Furthermore, microinjection of the Au-nanobeacon led to a negligible difference in mortality and malformations in comparison to the free oligonucleotide, indicating that this system is a biocompatible platform for the administration of gene silencing moieties. Together, these data illustrate the potential of Au-nanobeacons as tools for in vivo zebrafish gene modulation with low toxicity which may be used towards any gene of interest.

Matias, {AS }, Carlos {FF }, Pedrosa P, Fernandes {AR}, Baptista {PV}.  2017.  Gold nanoparticles in molecular diagnostics and molecular therapeutics, jan. Metal Nanoparticles in Pharma. :365–387., Switzerland: Springer International Publishing Abstract

Gold nanoparticles, due to their unique physicochemical properties, are among the most widely used nanoscale-based platforms for molecular diagnostics. The intrinsic chemical stability and apparent lack of toxicity have also prompted for application in therapeutics, e.g., for imaging modalities and as vectorization strategies for molecular modulators, i.e., gene silencing, specific targeting of cellular pathways, etc. Because of their common molecular ground, these approaches have been synergistically coupled together into molecular theranostic systems that allow for radical new in vivo diagnostics modalities with simultaneous tackling of molecular disequilibria leading to disease. Despite this tremendous potential, gold nanoparticle- based systems still have to make their effective translation to the clinics. This chapter focuses on the use of gold nanoparticles for molecular diagnostics and molecular therapeutics and their application in theranostics. Attention is paid to those systems that have moved toward the clinics.

Fernandes, {AR}, Jesus J, Martins P, Figueiredo S, Rosa D, Martins {LMRDRS}, Corvo {ML}, Carvalheiro {MC }, Costa {PM }, Baptista {PV}.  2017.  Multifunctional gold-nanoparticles: A nanovectorization tool for the targeted delivery of novel chemotherapeutic agents, jan. Journal of Controlled Release. 245:52–61.: Elsevier Abstract

Due to their small size and unique properties, multifunctional nanoparticles arise as versatile delivery systems easily grafted with a vast array of functional moieties, such as anticancer cytotoxic chemotherapeutics and targeting agents. Here, we formulated a multifunctional gold-nanoparticle (AuNP) system composed of a monoclonal antibody against epidermal growth factor receptor (EGFR) (anti-EGFR D-11) for active targeting and a Co(II) coordination compound [CoCl(H2O)(phendione)2][BF4] (phendione = 1,10-phenanthroline-5,6-dione) (TS265) with proven antiproliferative activity towards cancer cells (designated as TargetNanoTS265). The efficacy of this nanoformulation, and the non-targeted counterpart (NanoTS265), were evaluated in vitro using cancer cell models and in vivo using mice xenografts. Compared to the free compound, both nanoformulations (TargetNanoTS265 and NanoTS265) efficiently delivered the cytotoxic cargo in a controlled selective manner due to the active targeting, boosting tumor cytotoxicity. Treatment of HCT116-derived xenografts tumors with TargetNanoTS265 led to 93% tumor reduction. This simple conceptual nanoformulation demonstrates the potential of nanovectorization of chemotherapeutics via simple assembly onto AuNPs of BSA/HAS-drug conjugates that may easily be expanded to suit other cargo of novel compounds that require optimized controlled delivery to cancer target.

Roma-Rodrigues, C, Raposo {LR }, Cabral R, Paradinha F, Baptista {PV}, Fernandes {AR}.  2017.  Tumor microenvironment modulation via gold nanoparticles targeting malicious exosomes: Implications for cancer diagnostics and therapy, jan. International Journal of Molecular Sciences. 18, Number 1: MDPI - Multidisciplinary Digital Publishing Institute Abstract

Exosomes are nanovesicles formed in the endosomal pathway with an important role in paracrine and autocrine cell communication. Exosomes secreted by cancer cells, malicious exosomes, have important roles in tumor microenvironment maturation and cancer progression. The knowledge of the role of exosomes in tumorigenesis prompted a new era in cancer diagnostics and therapy, taking advantage of the use of circulating exosomes as tumor biomarkers due to their stability in body fluids and targeting malignant exosomes’ release and/or uptake to inhibit or delay tumor development. In recent years, nanotechnology has paved the way for the development of a plethora of new diagnostic and therapeutic platforms, fostering theranostics. The unique physical and chemical properties of gold nanoparticles (AuNPs) make them suitable vehicles to pursuit this goal. AuNPs’ properties such as ease of synthesis with the desired shape and size, high surface:volume ratio, and the possibility of engineering their surface as desired, potentiate AuNPs’ role in nanotheranostics, allowing the use of the same formulation for exosome detection and restraining the effect of malicious exosomes in cancer progression.

Carlos, {FF}, Veigas B, Matias {AS }, c}alo Dória G{\c, Flores O, Baptista {PV}.  2017.  Allele specific LAMP- gold nanoparticle for characterization of single nucleotide polymorphisms, dec. Biotechnology Reports. 16:21–25.: Springer Science Business Media Abstract

Due to their relevance as disease biomarkers and for diagnostics, screening of single nucleotide polymorphism (SNPs) requires simple and straightforward strategies capable to provide results in medium throughput settings. Suitable approaches relying on isothermal amplification techniques have been evolving to substitute the cumbersome and highly specialized PCR amplification detection schemes. Nonetheless, identification of an individual's genotype still requires sophisticated equipment and laborious methods. Here, we present a low-cost and reliable approach based on the allele specific loop-mediated isothermal amplification (AS-LAMP) coupled to ssDNA functionalized gold nanoparticle (Au-nanoprobe) colorimetric sequence discrimination. The Au-nanoprobe integration allows for the colorimetric detection of AS-LAMP amplification product that can be easily interpreted in less than 15 min. We targeted a clinical relevant SNP responsible for lactose intolerance (-13910C/T dbSNP rs#: 4988235) to demonstrate its proof of concept and full potential of this novel approach.

Vinhas, R, Mendes R, Fernandes {AR}, Baptista {PV}.  2017.  Nanoparticles-Emerging potential for managing leukemia and lymphoma, dec. Frontiers in Bioengineering and Biotechnology. 5: Frontiers Media Abstract

Nanotechnology has become a powerful approach to improve the way we diagnose and treat cancer. In particular, nanoparticles (NPs) possess unique features for enhanced sensitivity and selectivity for earlier detection of circulating cancer biomarkers. In vivo, NPs enhance the therapeutic efficacy of anticancer agents when compared with con-ventional chemotherapy, improving vectorization and delivery, and helping to overcome drug resistance. Nanomedicine has been mostly focused on solid cancers due to take advantage from the enhanced permeability and retention (EPR) effect experienced by tissues in the close vicinity of tumors, which enhance nanomedicine's accumulation and, consequently, improve efficacy. Nanomedicines for leukemia and lymphoma, where EPR effect is not a factor, are addressed differently from solid tumors. Nevertheless, NPs have provided innovative approaches to simple and non-invasive methodologies for diagnosis and treatment in liquid tumors. In this review, we consider the state of the art on different types of nanoconstructs for the management of liquid tumors, from preclinical studies to clinical trials. We also discuss the advantages of nanoplatforms for theranostics and the central role played by NPs in this combined strategy.

Raposo, {LR }, Roma-Rodrigues C, Jesus J, Martins {LMDRS, Pombeiro {AJL }, Baptista {PV }, Fernandes {AR }.  2017.  Targeting canine mammary tumours via gold nanoparticles functionalized with promising Co(II) and Zn(II) compounds, dec. Veterinary and Comparative Oncology. 15:1537–1542., Number 4: Wiley-Blackwell Abstract

Background: Despite continuous efforts, the treatment of canine cancer has still to deliver effective strategies. For example, traditional chemotherapy with doxorubicin and/or docetaxel does not significantly increase survival in dogs with canine mammary tumors (CMTs). Aims: Evaluate the efficiency of two metal compounds [Zn(DION)2]Cl (TS26

Vinhas, R, Cordeiro M, Pedrosa P, Fernandes {AR}, Baptista {PV}.  2017.  Current trends in molecular diagnostics of chronic myeloid leukemia, aug. Leukemia & Lymphoma. 58:1791–1804., Number 8: TAYLOR & FRANCIS LTD Abstract

Nearly 1.5 million people worldwide suffer from chronic myeloid leukemia (CML), characterized by the genetic translocation t(9;22)(q34;q11.2), involving the fusion of the Abelson oncogene (ABL1) with the breakpoint cluster region (BCR) gene. Early onset diagnosis coupled to current therapeutics allow for a treatment success rate of 90, which has focused research on the development of novel diagnostics approaches. In this review, we present a critical perspective on current strategies for CML diagnostics, comparing to gold standard methodologies and with an eye on the future trends on nanotheranostics.

Araújo, N, Fernandes C, Moniz AB, Barata J.  2017.  Additive technology safety issues: Impact on the related job design in industry, 7-8 Sep. 2017. 4º Congresso Internacional sobre Condições de Trabalho. , Porto: Rede de Investigação sobre Condições de Trabalho (RICOT) Abstract

The embedding of technology and the digitalization of processes and services within industry holds the promise for increased flexibility and productivity. Associated with the tendencies within industry 4.0 there are several enabling technologies, such has 3D printing and additive manufacturing technologies that are becoming very popular and used for industrial processes, although not without hazard. With the present paper the authors aim to explore the impacts industrial 3D printing on health and safety at work and design possible industrial intervention measures.
The technological process underneath 3D printing by itself encompasses hazardous exposure scenarios, for example: i) those that imply that thermoplastics are heated, nozzle extruded and then deposited onto a surface to build a part. Thus, by-product nanoparticles (< 1/10.000 of a millimetre) are emitted; ii) for low temperature polylactic acid (PLA) 20 billion of particles per minute can be released; iii) at higher temperatures acrylonitrile butadiene styrene (ABS) feedstock can release up to 200 billion nanoparticles.
The raw materials, can have multiple uses (e.g. raw material or support materials), origins (e.g. metallic, plastic) and forms (e.g. solid, powder). These materials encompass hazards related with: i) harmful chemicals, used mainly on support materials that are used to allow the creation of empty spaces on printed parts, such as phenyl phosphates, hazardous during use and disposal; ii) the use of metal powders, such as titanium and aluminium can spontaneously combust causing fires; iii) hot surfaces, high voltage, ultraviolet radiation, laser and moving parts are important hazards related with 3D printing machines.
Occupational health and safety measures must deal with: 1. technology that allows the contention of the hazardous agent emission without compromising the production process – for example by airtight chambers, ventilation and exhaustion chambers; 2. Compliance with ATEX directives, for metal powders use; 3. development of training and certification requirements for operating 3D industrial processes and to capacitate workers (materials, techniques, best practises); 4. Making available protective equipment’s that respond to the hazards.
There are many practical challenges related with occupational health and safety, for 3D printing technologies industrial incorporation and ownership. It’s known that hazardous materials are released during the fabrication processes, although the exposure scenarios are not well known or studied. More robust experiments and sophisticated control methods are needed to know and tackle the hazards for 3Dprinting use in industrial contexts – the size and distribution of particles (including nanoparticles), its concentration, its mass and the total volatile organic compound (COV). The study of Huang et al (2013) on societal impact develops these issues.
Since the product safety regulations depend currently on centralized manufacturing (safety testing and regular inspection in factories), 3D printing is expected to bring a dispersion of manufacturing, raising questions about safety issues. Some authors suggests that even if we move the regulation process from the products to the software of the manufacturing process in 3D-printing, concerns still remain due to the poor success of the information regulation on line as well as to the scarce ability to stop the distribution of files, particularly when combined with jurisdictional concerns.

Raposo, LR, Roma-Rodrigues C, Jesus J, Martins LMDRS, Pombeiro AJ, Baptista PV, Fernandes AR.  2017.  Targeting canine mammary tumours via gold nanoparticles functionalized with promising Co(II) and Zn(II) compounds, 2017/12/01. Veterinary and Comparative Oncology. 15(4):1537-1542.: Blackwell Publishing Ltd AbstractWebsite

Background: Despite continuous efforts, the treatment of canine cancer has still to deliver effective strategies. For example, traditional chemotherapy with doxorubicin and/or docetaxel does not significantly increase survival in dogs with canine mammary tumors (CMTs).Aims: Evaluate the efficiency of two metal compounds [Zn(DION)2]Cl (TS262, DION = 1,10-phenanthroline-5,6-dione) and [CoCl(H2O)(DION)2][BF4] (TS265) and novel nanovectorizations designed to improve the anti-cancer efficacy of these compounds in a new CMT derived cell line (FR37-CMT).
Materials and methods: FR37-CMT cells were exposed to different concentrations of TS262 and TS265 and two new nanoparticle systems and cellular viability was determined. These nanosystems are composed of polyethylene-glycol, bovine-serum-albumin and TS262 or TS265 (NanoTS262 or NanoTS265, respectively).
Results: In FR37-CMT, TS262 and TS265 displayed IC50 values well below those displayed by doxorubicin and cisplatin. The nanovectorizations further decreased the IC50 values.
Discussion: TS262 and TS265 proved to be effective against FR37-CMT cells and more effective than of doxorubicin and cisplatin. The Nanosystems efficiently delivered the cytotoxic cargo inducing a significant reduction of cell viability in FR37-CMT cell line when compared to the free compounds.
Conclusions: TS262 and TS265 are compounds with potential in the treatment of CMTs. NanoTS262 and NanoTS265 demonstrate that such simple nanovectorization via gold nanoparticles shows tremendous potential as anti-cancer formulations, which may easily be expanded to suit other cargo.

Moro, AJ, Parola AJ, Pina F, Pana AM, Badea V, Pausescu I, Shova S, Cseh L.  2017.  2,2'-Spirobis chromene Derivatives Chemistry and Their Relation with the Multistate System of Anthocyanins, 2017. Journal of Organic Chemistry. 82(10):5301-5309. AbstractWebsite
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Bule, P, Alves VD, Israeli-Ruimy V, Carvalho AL, Ferreira LMA, Smith SP, Gilbert HJ, Najmudin S, Bayer EA, Fontes CMGA.  2017.  Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes, 2017. Scientific Reports. 7:759. AbstractWebsite

Cellulosomes are sophisticated multi-enzymatic nanomachines produced by anaerobes to effectively deconstruct plant structural carbohydrates. Cellulosome assembly involves the binding of enzyme-borne dockerins (Doc) to repeated cohesin (Coh) modules located in a non-catalytic scaffoldin. Docs appended to cellulosomal enzymes generally present two similar Coh-binding interfaces supporting a dual-binding mode, which may confer increased positional adjustment of the different complex components. Ruminococcus flavefaciens’ cellulosome is assembled from a repertoire of 223 Doc-containing proteins classified into 6 groups. Recent studies revealed that Docs of groups 3 and 6 are recruited to the cellulosome via a single-binding mode mechanism with an adaptor scaffoldin. To investigate the extent to which the single-binding mode contributes to the assembly of R. flavefaciens cellulosome, the structures of two group 1 Docs bound to Cohs of primary (ScaA) and adaptor (ScaB) scaffoldins were solved. The data revealed that group 1 Docs display a conserved mechanism of Coh recognition involving a single-binding mode. Therefore, in contrast to all cellulosomes described to date, the assembly of R. flavefaciens cellulosome involves single but not dual-binding mode Docs. Thus, this work reveals a novel mechanism of cellulosome assembly and challenges the ubiquitous implication of the dual-binding mode in the acquisition of cellulosome flexibility.

Mendoza, J, Basilio N, Dangles O, Mora N, Al Bittar S, Pina F.  2017.  Binding of the five multistate species of the anthocyanin analog 7-beta-D-glucopyranosyloxy-4'-hydroxyflavylium to the beta-cyclodextrin derivative captisol, 2017. Dyes and Pigments. 143:479-487. AbstractWebsite
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Huang, RJ, Avo J, Northey T, Chaning-Pearce E, dos Santos PL, Ward JS, Data P, Etherington MK, Fox MA, Penfold TJ, Berberan-Santos MN, Lima JC, Bryce MR, Dias FB.  2017.  The contributions of molecular vibrations and higher triplet levels to the intersystem crossing mechanism in metal-free organic emitters, 2017. Journal of Materials Chemistry C. 5(25):6269-6280. AbstractWebsite
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Cruz, H, Jordao N, Branco LC.  2017.  Deep eutectic solvents (DESs) as low-cost and green electrolytes for electrochromic devices, 2017. Green Chemistry. 19(7):1653-1658. AbstractWebsite
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Gago, S, Basilio N, Quintas A, Pina F.  2017.  Effect of beta-Cyclodextrin on the Multistate Species Distribution of 3-Methoxy-4',7-dihydroxyflavylium. Discrimination of the Two Hemiketal Enantiomers, 2017. Journal of Agricultural and Food Chemistry. 65(31):6346-6358. AbstractWebsite
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Palomar, T, Chabas A, Bastidas DM, de la Fuente D, Verney-Carron A.  2017.  Effect of marine aerosols on the alteration of silicate glasses, 2017. Journal of Non-Crystalline Solids. 471:328-337. AbstractWebsite
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Delgado, JM, Nunes D, Fortunato E, Laia CAT, Branco LC, Vilarigues M.  2017.  The effect of three luminescent ionic liquids on corroded glass surfaces - A first step into stained-glass cleaning, 2017. Corrosion Science. 118:109-117. AbstractWebsite
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Delgado, JM, Nunes D, Fortunato E, Laia CAT, Branco LC, Vilarigues M.  2017.  The effect of three luminescent ionic liquids on corroded glass surfaces – A first step into stained-glass cleaning, 2017. Corrosion Science. 118:109-117. AbstractWebsite
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Pessego, M, Gago S, Basilio N, Laia CAT, Parola AJ, Lima JC, Pina F.  2017.  Hiding and unveiling trans-chalcone in a constrained derivative of 4 ',7-dihydroxyflavylium in water: a versatile photochromic system, 2017. Organic & Biomolecular Chemistry. 15(2):338-347. AbstractWebsite
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Oliveira, J, Araujo P, Fernandes A, Bras NF, Mateus N, Pina F, de Freitas V.  2017.  Influence of the structural features of amino-based pyranoanthocyanins on their acid-base equilibria in aqueous solutions, 2017. Dyes and Pigments. 141:479-486. AbstractWebsite
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