Publications

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2008
Carrera, GVSM, Branco LC, Aires-de-Sousa J, Afonso CAM.  2008.  Exploration of quantitative structure-property relationships (QSPR) for the design of new guanidinium ionic liquids. Tetrahedron. 64:2216-2224., Number 9 Abstract
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Sousa, MM, Melo MJ, Parola JA, Seixas de Melo SJ, Catarino F, Pina F, Cook FEM, Simmonds MSJ, Lopes JA.  2008.  Flavylium chromophores as species markers for dragon's blood resins from Dracaena and Daemonorops trees. Journal of Chromatography A. 1209:153-161., Number 1-2 Abstract
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Bazzicalupi, C, Bencini A, Bianchi A, Danesi A, Faggi E, Giorgi C, Lodeiro C, Oliveira E, Pina F, Valtancoli B.  2008.  Interaction of polyamine macrocycles with Zn(II) and ATP in aqueous solution. Binary and ternary systems. A potentiometric, NMR and fluorescence emission study. Inorganica Chimica Acta. 361:3410-3419., Number 12-13 Abstract
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Laia, CAT, Costa SMB.  2008.  Interaction of zinc tetrasulfonated phthalocyanine with cytochrome c in water and Triton-X 100 micelles. Journal of Physical Chemistry B. 112:4276-4282., Number 14 Abstract
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Monteiro, B, Gago S, Paz FAA, Bilsborrow R, Goncalves IS, Pillinger M.  2008.  Investigation of layered double hydroxides intercalated by oxomolybdenum catecholate complexes. Inorganic Chemistry. 47:8674-8686., Number 19 Abstract
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Branco, LC, Crespo JG, Afonso CAM.  2008.  Ionic liquids as an efficient bulk membrane for the selective transport of organic compounds. Journal of Physical Organic Chemistry. 21:718-723., Number 7-8 Abstract
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Pinheiro, AV, Baptista P, Lima JC.  2008.  Light activation of transcription: photocaging of nucleotides for control over RNA polymerization. Nucleic Acids Research. 36, Number 14 Abstract
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Giestas, L, Ferreira GNM, Baptista PV, Lima JC.  2008.  Multiplexed spectral coding for simultaneous detection of DNA hybridization reactions based on FRET. Sensors and Actuators B-Chemical. 134:146-157., Number 1 Abstract
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Rodriguez, L, Lodeiro C, Lima JC, Crehuet R.  2008.  Neutral gold(I) metallosupramolecular compounds: Synthesis and characterization, photophysical properties, and density functional theory studies. Inorganic Chemistry. 47:4952-4962., Number 11 Abstract
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Gago, S, Costa T, de Melo SJ, Goncalves IS, Pillinger M.  2008.  Preparation and photophysical characterisation of Zn-Allayered double hydroxides intercalated by anionic pyrene derivatives. Journal of Materials Chemistry. 18:894-904., Number 8 Abstract
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Vidinha, P, Augusto V, Nunes J, Lima JC, Cabral JMS, Barreiros S.  2008.  Probing the microenvironment of sol-gel entrapped cutinase: The role of added zeolite NaY. Journal of Biotechnology. 135:181-189., Number 2 Abstract
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Branco, LC, Ferreira FC, Santos JL, Crespo JG, Afonso CAM.  2008.  Sharpless asymmetric dihydroxylation of olefins in water-surfactant media with recycling of the catalytic system by membrane nanofiltration. Advanced Synthesis & Catalysis. 350:2086-2098., Number 13 Abstract
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Ferrer, M, Gutierrez A, Rodriguez L, Rossell O, Lima JC, Font-Bardia M, Solans X.  2008.  Study of the effect of the phosphane bridging chain nature on the structural and photophysical properties of a series of gold(I) ethynylpyridine complexes. European Journal of Inorganic Chemistry. :2899-2909., Number 18 Abstract
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Barbazan, P, Carballo R, Covelo B, Lodeiro C, Lima JC, Vazquez-Lopez EM.  2008.  Synthesis, characterization, and photophysical properties of 2-hydroxybenzaldehyde [(1E)-1-pyridin-2-ylethylidene]hydrazone and its rhenium(I) complexes. European Journal of Inorganic Chemistry. :2713-2720., Number 17 Abstract
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Nunez, C, Oliveira E, Giestas L, Valencia L, Macias A, Lima JC, Bastida R, Lodeiro C.  2008.  Synthesis, spectroscopic, structural and complexation studies of a new tetra-naphthylmethylene pendant-armed macrocyclic ligand. Inorganica Chimica Acta. 361:2183-2194., Number 8 Abstract
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Claro, A, Melo MJ, Schafer S, de Melo SSJ, Pina F, van den Berg KJ, Burnstock A.  2008.  The use of microspectrofluorimetry for the characterization of lake pigments. Talanta. 74:922-929., Number 4 Abstract
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2007
Jimenez, A, Pinheiro C, Parola AJ, Maestri M, Pina F.  2007.  The chemistry of 6-hydroxyflavylium: zwitterionic base and p-quinoidal chalcones. A multiswitchable system operated by proton, electron and photon inputs, 2007. Photochemical & Photobiological Sciences. 6:372-380. Abstract

The complex network of chemical reactions of the compound 6-hydroxyflavylium perchlorate was studied by different techniques including UV-vis absorption spectrophotometry, stopped-flow, electrochemistry, and photochemistry. The network is characterized by the formation of a very reactive zwitterionic base as well as by p-quinoidal chalcones. The trans-chalcone is metastable in very acidic solutions and exhibits reversible redox reactions, allowing to introduce for the first time in the flavylium network an electrochemical input.

Parola, AJ, Pereira P, Pina F, Maestri M.  2007.  Effect of SDS micelles on the reactivity of 4 '-methoxyflavylium ion: A stopped-flow and photochemical study, 2007. Journal of Photochemistry and Photobiology a-Chemistry. 185:383-390. Abstract

The network of chemical reactions of the compound 4'-methoxyflavylium was studied in the presence of SDS micelles, using stopped-flow, UV-vis absorption and flash photolysis techniques. The results were compared with analogous experiments carried out in water. The large stabilization of the flavylium cation onto the micelles was proven to be due to an increase in the rate of the dehydration reaction, rather than a decrease of the hydration reaction; the cis-trans isomerisation of the chalcone was not affected by the micelles. It is shown that SDS micelles can be considered as an external stimulus capable of changing the system from one state to another. (c) 2006 Elsevier B.V. All rights reserved.

Gomes, R, Parola AJ, Laia CAT, Pina F.  2007.  Efficient photochromism from the network of chemical reactions of 7,4 '-dihydroxyflavylium in CTAB micelles, 2007. Photochemical & Photobiological Sciences. 6:1003-1009. Abstract

Differently from water,effcient photochromism with a strong colour contrast has been observed for the multistate compound 7,4'- dihydroxyflavylium in the presence of cetyl trimethylammonium bromide ( CTAB) micelles. Two states are responsible for the photochromism: trans-chalcone ( inside the micelle) in the dark, and flavylium cation, AH(+), ( in bulk water) upon irradiation. The kinetics of the system was characterized by. ash photolysis and pH jumps. Evidence that the photochemical process leading to AH(+) occurs in the micelle was achieved. The best colour contrast is obtained at pH = 1.5, from a solution practically colourless in the dark, to an intense yellow upon irradiation ( quantum yield 0.4). The system is completely reversible with a lifetime of 38 min at room temperature, and exhibits a reasonable stability. A kinetic model capable of fitting the data from thermal entrance of the compound into the micelle, its ejection to bulk water upon irradiation and quantum yields of the photochemical process is proposed.

Melo, MJ, Sousa M, Parola AJ, de Melo JSS, Catarino F, Marcalo J, Pina F.  2007.  Identification of 7,4 '-dihydroxy-5-methoxyflavylium in "Dragon's blood": To be or not to be an anthocyanin, 2007. Chemistry-a European Journal. 13:1417-1422. Abstract

The compound 7,4'-dihydroxy-5-methoxyflavylium (dracoflavylium) was identified as the major red colorant in samples of the resin "dragon's blood", extracted from the tree Dracaena draco. The complex network of reversible chemical reactions that dracoflavylium undergoes in aqueous solution is fully described; for the first time, all the equilibrium constants that enable a complete characterisation of the system have been obtained (K'(a)=1.6 x 10(-4), K-a1 = 1.0 x 10(-4), K-a2 = 3.2 x 10(-8), K-Ct1 = 1.0 x 10(-7), K-Ct2 = 1.3 x 10(-10)). It is concluded that the red colour is due to a stable quinoid base, A, which is the major species at pH 4-7. It is further shown that this compound does not fit the commonly accepted definitions of anthocyanidin nor 3-deoxyanthocyanidin. Similarly to synthetic flavylium salts, the natural compound 7,4'-dihydroxy-5-methoxyflavylium gives rise to several species (multistate system) reversibly interconverted by external stimuli, such as pH.

Laia, CAT, Parola AJ, Folgosa F, Pina F.  2007.  Multistate reaction kinetics of 6-hydroxy-4 '-(dimethylamino)flavylium driven by pH. A stopped-flow study, 2007. Organic & Biomolecular Chemistry. 5:69-77. Abstract

The synthetic flavylium salt 6-hydroxy-4'-(dimethylamino)flavylium hexa. uorophosphate displays a set of pH-driven chemical reactions in aqueous solutions, involving the formation of hemiketal species and chalcones with cis and trans configurations. Such reactions were studied by steady-state and transient UV-Vis spectroscopy and by stopped-flow techniques. A novel and more generalized kinetic scheme is developed, in order to take account of possible acid/base pairs that occur in the network of chemical reactions as the pH is changed. It is found that the formation of the hemiketal species by hydration of the. avylium is slow, and it is not possible to isolate each process that leads to the formation of the cis-chalcone ( hydration and tautomerization reactions). The cis/trans isomerization reaction of cis-chalcone is slow, and the system takes several hours to reach equilibrium after a pH jump at room temperature. In basic conditions, negatively charged trans-chalcones are dominant. Comparison with other. avylium compounds shows that the hydration process is affected mainly by the amino group, while the hydroxyl group influences the tautomerization and isomerization reactions.

Pina, F, Parola AJ, Melo MJ, Laia CAT, Afonso CAM.  2007.  Photochromism of 7-(N, N-diethylamino) 4 '-hydroxyflavylium in a water-ionic liquid biphasic system, 2007. Chemical Communications. :1608-1610. Abstract

Photochromism of trans-4-(N,N-diethylamino)-2,4'-dihydroxychalcone, with formation of the photoproduct 7-(N,N-diethylamino)-4'-hydroxyflavylium, is promoted in the ionic liquid phase of a water/[bmim][PF6] biphasic system.

Gomes, R, Parola AJ, Laia CAT, Pina F.  2007.  Promoting photochromism on flavylium derived 2-hydroxychalcones in aqueous solutions by addition of CTAB micelles, 2007. Journal of Physical Chemistry B. 111:12059-12065. Abstract

A strategy to obtain photochromism from the network of chemical reactions originated by flavyliurn compounds in solution is described. This strategy is particularly useful for flavyliurn salts bearing amino groups which give rise to a variety of beautiful colors but lack photochemistry in water. The trans-chalcone of 7-(N,Ndiethylamino)-4'-hydroxyflavylium interacts strongly with CTAB micelles defining a yellow dark state. Upon irradiation, the system switches to a pink-red state emerging from the flavylium cation that is formed inside the micelle and ejected to the bulk aqueous phase. The photochemical product reverts back to the transchalcone adduct with the micelle in the dark. The thermodynamics as well as the kinetics of the photochromic system were studied in detail. The best color contrast is obtained at pH = 4.25 with (D = 0.001 and a recovery lifetime of approximately 3 h. This photochromic system works with no need of changing the pH, which constitutes an important improvement over previously described systems dependent on pH jumps.

de Melo, JS, Takato S, Sousa M, Melo MJ, Parola AJ.  2007.  Revisiting Perkin's dye(s): the spectroscopy and photophysics of two new mauveine compounds (B2 and C), 2007. Chemical Communications. :2624-2626. Abstract

Two new components have been identified in an early sample prepared according to the original recipe of Perkin, and perhaps even by Perkin himself around 1860 - a new isomer of Perkin's mauveine B (designated as mauveine B2) together with a new mauveine compound (mauveine C) - and these compounds were synthesized again using starting materials chosen to reproduce Perkin's original synthesis and isolated by HPLC-DAD, identified by H-1 NMR, MS and their spectroscopic (UV/Vis and emission) and photophysical behaviour investigated.