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Atilano, ML, Pereira PM, Yates J, Reed P, Veiga H, Pinho* MG, Filipe* SR.  2010.  Teichoic acids are temporal and spatial regulators of peptidoglycan cross-linking in Staphylococcus aureus. Proc. Natl. Acad. Sci. USA. 107:18991-18996.
Atilano, ML, Pereira PM, Vaz F, Catalão MJ, Reed P, Grilo IR, Sobral RG, Ligoxygakis P, Pinho MG, Filipe SR.  2014.  Bacterial autolysins trim cell surface peptidoglycan to prevent detection by the Drosophila innate immune system. eLife. 3:e02277.
Atilano, ML, Yates J, Glittenberg M, Filipe* SR, Ligoxygakis* P.  2011.  Wall teichoic acids of Staphylococcus aureus limit recognition by the Drosophila Peptidoglycan Recognition Protein-SA to promote pathogenicity. PLoS Pathogens. 7:e1002421.
Carvalho, F, Atilano ML, Pombinho R, Covas G, Gallo RL, Filipe SR, Sousa S, Cabanes D.  2015.  L-Rhamnosylation of Listeria monocytogenes wall teichoic acids promotes resistance to antimicrobial peptides by delaying interaction with the membrane. PLoS Pathogens. 11:e1004919.
Catalao, MJ, Figueiredo J, Henriques MX, Gomes JP, Filipe SR.  2014.  Optimization of fluorescent tools for cell biology studies in Gram-positive bacteria. PLoS One. 9:e113796.
Dajkovic, A, Tesson B, Chauhan S, Courtin P, Keary R, Flores P, Marliere C, Filipe SR, Chapot-Chartier M-P, Carballido-Lopez R.  2017.  Hydrolysis of Peptidoglycan is Modulated by Amidation of meso-Diaminopimelic Acid and Mg2+ in Bacillus subtilis. Mol. Microbiol. 104:972-988.
Filipe, SR, Severina E, Tomasz A.  2000.  Distribution of the mosaic structured murM genes among natural populations of Streptococcus pneumoniae. J. Bacteriol. 182:6798-6805.
Filipe, SR, Severina E, Tomasz A.  2001.  The role of the murMN operon in penicillin resistance and antibiotic tolerance of Streptococcus pneumoniae. Microb. Drug Resist. 7:303-6.
Filipe, SR, Tomasz A, Ligoxygakis P.  2005.  Requirements of peptidoglycan structure allowing detection by the Drosophila Toll pathway. EMBO Reports. 6:327-333.
Filipe, SR, Severina E, Tomasz A.  2002.  The murMN operon: a functional connection between antibiotic resistance and antibiotic tolerance in Streptococcus pneumoniae. Proc. Natl. Acad. Sci. USA. 99:1550-1555.
Fiser, A, Filipe SR, Tomasz A.  2003.  Cell wall branches, penicillin resistance and the secrets of the MurM protein. Trends Microbiol. 11:547-553.
Gardete, S, Ludovice AM, Sobral RG, Filipe SR, de Lencastre H, Tomasz A.  2004.  The role of murE in the expression of b-lactam antibiotic resistance in Staphylococcus aureus. J. Bacteriol. 186:1705-1713.
Gravato-Nobre, MJ, Vaz F, Filipe S, Chalmers R, Hodgkin J.  2016.  The invertebrate lysozyme effector ILYS-3 is systemically activated in response to danger signals and confers antimicrobial protection in C. elegans. PLoS Pathogens. 15:e1005826.
Greene, NG, Narciso AR, Filipe SR, Camilli A.  2015.  Peptidoglycan branched stem peptides contribute to Streptococcus pneumoniae virulence by inhibiting pneumolysin release. PLoS Pathogens. 11:e1004996.
Henriques, MX, Catalão MJ, Figueiredo J, Gomes JP, Filipe SR.  2013.  Construction of improved tools for protein localization studies in Streptococcus pneumoniae. PLoS One. 8:e55049.
Henriques, MX, Rodrigues T, Carido M, Ferreira L, Filipe SR.  2011.  Synthesis of capsular polysaccharide at the division septum of Streptococcus pneumoniae is dependent on a bacterial tyrosine kinase. Mol. Microbiol. 82:515-534.
Lau, IF, Filipe SR, Soballe B, Okstad O-A, Barre F-X, Sherratt DJ.  2003.  Spatial and temporal organization of replicating Escherichia coli chromosomes. Mol Microbiol. 49:731-743.
de Lencastre, H, Wu SW, Pinho MG, Ludovice AM, Filipe S, Gardete S, Sobral R, Gill S, Chung M, Tomasz A.  1999.  Antibiotic resistance as a stress response: complete sequencing of a large number of chromosomal loci in Staphylococcus aureus strain COL that impact on the expression of resistance to methicillin. Microb. Drug Resist. 5:163-175.
Memmi, G, Filipe SR, Pinho MG, Fu Z, Cheung A.  2008.  Staphylococcus aureus PBP4 is essential for beta-lactams resistance in community-acquired methicillin resistant strains. Antimicrob Agents Chemother. 52:3955-3966.
Monteiro, JM, Fernandes PB, Vaz F, Pereira AR, Tavares AC, Ferreira MT, Pereira PM, Veiga H, Kuru E, VanNieuwenhze M, Brun YV, Filipe SR, Pinho MG.  2015.  Cell shape dynamics during the staphylococci cell cycle. Nat. Commun. 6:8055.
Monteiro, JM, Pereira AR, Reichmann NT, Saraiva BM, Fernandes PB, Veiga H, Tavares AC, Santos M, Ferreira MT, Macário V, VanNieuwenhze MS, Filipe SR, Pinho MG.  2018.  Peptidoglycan synthesis drives an FtsZ-treadmilling-independent step of cytokinesis. Nature. 554:528-532.
Payne, BT, van Knippenberg IC, Bell H, Filipe SR, Sherratt DJ, McGlynn P.  2006.  Replication fork blockage by transcription factor—DNA complexes in Escherichia coli. Nucleic Acids Res. 2006:5194-5202.