Almeida, MG, Serra A, Silveira CM, Moura JJ.
2010.
Nitrite Biosensing via Selective Enzymes-A Long but Promising Route. Sensors. 10:11530-55., Number 12
AbstractThe last decades have witnessed a steady increase of the social and political awareness for the need of monitoring and controlling environmental and industrial processes. In the case of nitrite ion, due to its potential toxicity for human health, the European Union has recently implemented a number of rules to restrict its level in drinking waters and food products. Although several analytical protocols have been proposed for nitrite quantification, none of them enable a reliable and quick analysis of complex samples. An alternative approach relies on the construction of biosensing devices using stable enzymes, with both high activity and specificity for nitrite. In this paper we review the current state-of-the-art in the field of electrochemical and optical biosensors using nitrite reducing enzymes as biorecognition elements and discuss the opportunities and challenges in this emerging market.
Cardoso, T.
2010.
O uso eficiente da água nos edifícios de habitação. Faculdade de Ciências e Tecnologia. (
Amado, Miguel, Ed.)., Lisbon
Abstracthe lack of drinking water involves the entire world population and should be viewed as an inherent reality that must be investigated and solved.
This dissertation analyzes the implications that the consumption of drinking water has in the world and its consequences in Portugal. In order to focus the work in the area of Civil Engineering, the thesis studies the consumption of water and its efficiency in buildings, as well as measures that contribute to an increased efficiency for this consumption, both in terms of passive devices as in terms of water reuse, could it be rainwater or waste water.
The study of the efficiency of water consumption in residential buildings is done separately for family buildings and for multifamily buildings, thus discriminating which are the most efficient measures to reduce consumption in each one. Based on this division it is possible to verify that the use of rainwater is a measure that can reduce water consumption and should be implemented in family buildings. Moreover, reuse of waste water shows that it is possible to reduce and even get a surplus of water for use in toilets and irrigation of green spaces adjacent. This measure despite being highly efficient needs normative studies in order to be properly dimensioned and ensure an acceptable water quality, i.e., colorless, odorless and without toxic waste to the population.
The last chapter describes activities with the aim of increasing the efficiency of urban consumption, separately for each one of the phases of the building life cycle and finally presents a table summarizing the implementation of the different methodologies proposed.
Morgado, L, Fernandes AP, Londer YY, Bruix M, Salgueiro CA.
2010.
One simple step in the identification of the cofactors signals, one giant leap for the solution structure determination of multiheme proteins. Biochemical and Biophysical Research Communications. 393(3):466-470.
AbstractMultiheme proteins play major roles in various biological systems. Structural information on these systems in solution is crucial to understand their functional mechanisms. However, the presence of numerous proton-containing groups in the heme cofactors and the magnetic properties of the heme iron, in particular in the oxidised state, complicates significantly the assignment of the NMR signals. Consequently, the multiheme proteins superfamily is extremely under-represented in structural databases, which constitutes a severe bottleneck in the elucidation of their structural–functional relationships. In this work, we present a strategy that simplifies the assignment of the NMR signals in multiheme proteins and, concomitantly, their solution structure determination, using the triheme cytochrome PpcA from the bacterium Geobacter sulfurreducens as a model. Cost-effective isotopic labeling was used to double label (13C/15N) the protein in its polypeptide chain, with the correct folding and heme post-translational modifications. The combined analysis of 1H–13C HSQC NMR spectra obtained for labeled and unlabeled samples of PpcA allowed a straight discrimination between the heme cofactors and the polypeptide chain signals and their confident assignment. The results presented here will be the foundations to assist solution structure determination of multiheme proteins, which are still very scarce in the literature.
Morgado, L, Saraiva IH, Louro RO, Salgueiro CA.
2010.
Orientation of the axial ligands and magnetic properties of the hemes in the triheme ferricytochrome PpcA from G. sulfurreducens determined by paramagnetic NMR. FEBS Letters. 584(15):3442-3445.
AbstractThe geometry of the axial ligands of the hemes in the triheme cytochrome PpcA from Geobacter sulfurreducens was determined in solution for the ferric form using the unambiguous assignment of the NMR signals of the α-substituents of the hemes. The paramagnetic 13C shifts of the hemes can be used to define the heme electronic structure, the geometry of the axial ligands, and the magnetic susceptibility tensor. The latter establishes the magnitude and geometrical dependence of the pseudocontact shifts, which are crucial to warrant reliable structural constraints for a detailed structural characterization of this paramagnetic protein in solution.
Catarino, T, Pessanha M, Candia ADG, Gouveia Z, Fernandes AP, Pokkuluri PR, Murgida D, Marti MA, Todorovic S, Salgueiro CA.
2010.
Probing the Chemotaxis Periplasmic Sensor Domains from Geobacter sulfurreducens by Combined Resonance Raman and Molecular Dynamic Approaches: NO and CO Sensing. The Journal of Physical Chemistry B. 114 (34):11251-11260.
AbstractThe periplasmic sensor domains encoded by genes gsu0582 and gsu0935 are part of methyl accepting chemotaxis proteins in the bacterium Geobacter sulfurreducens (Gs). The sensor domains of these proteins contain a heme-c prosthetic group and a PAS-like fold as revealed by their crystal structures. Biophysical studies of the two domains showed that nitric oxide (NO) binds to the heme in both the ferric and ferrous forms, whereas carbon monoxide (CO) binds only to the reduced form. In order to address these exogenous molecules as possible physiological ligands, binding studies and resonance Raman (RR) spectroscopic characterization of the respective CO and NO adducts were performed in this work. In the absence of exogenous ligands, typical RR frequencies of five-coordinated (5c) high-spin and six-coordinated (6c) low-spin species were observed in the oxidized form. In the reduced state, only frequencies corresponding to the latter were detected. In both sensors, CO binding yields 6c low-spin adducts by replacing the endogenous distal ligand. The binding of NO by the two proteins causes partial disruption of the proximal Fe-His bond, as revealed by the RR fingerprint features of 5cFe-NO and 6cNO-Fe-His species. The measured CO and NO dissociation constants of ferrous GSU0582 and GSU0935 sensors reveal that both proteins have high and similar affinity toward these molecules (Kd ≈ 0.04−0.08 μM). On the contrary, in the ferric form, sensor GSU0582 showed a much higher affinity for NO (Kd ≈ 0.3 μM for GSU0582 versus 17 μM for GSU0935). Molecular dynamics calculations revealed a more open heme pocket in GSU0935, which could account for the different affinities for NO. Taken together, spectroscopic data and MD calculations revealed subtle differences in the binding properties and structural features of formed CO and NO adducts, but also indicated a possibility that a (5c) high-spin/(6c) low-spin redox-linked equilibrium could drive the physiological sensing of Gs cells.
Espírito Santo, H.
2010.
Procedimentos para uma certificação da construção sustentável. Faculdade de Ciências e Tecnologia. (
Amado, Miguel, Ed.)., Lisbon
AbstractIncreasing levels of environmental pollution and destruction of the planet, as
well as the future of societies, have been prominent themes in our time.
Concern about the sustainable future of ecosystems and future generations
brings to each sector of activity the need to define a process of sustainable development
and measures that ought to be implemented.
In the construction sector this is a major issue, since it consumes a great part of
natural resources, and leads to high emissions of pollutants. Likewise, this sector
determines the mode of living of human beings, as well as their comfort and health.
The work herein presented has the purpose to study how, and what systems and
procedures should be implemented to ensure techniques for sustainable construction,
and consequently achieve the principles of sustainable development into its
components: environment, society and economy.
The national reality of professionals will also be referred to, thus contributing to
a practice of sustainable construction, complementary to what currently exists both
national and internationally.
Thus, this study aims to reflect on the importance of certification, systems and
procedures, to ensure compliance of construction with the sustainability goals.
Inoue, K, Qian X, Morgado L, Kim B-C, Mester T, Izallalen M, Salgueiro CA, Lovley DR.
2010.
Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens. Applied and Environmental Microbiology. 76(12):3999-4007.
AbstractPrevious studies have demonstrated that Geobacter sulfurreducens requires the c-type cytochrome OmcZ, which is present in large (OmcZL; 50-kDa) and small (OmcZS; 30-kDa) forms, for optimal current production in microbial fuel cells. This protein was further characterized to aid in understanding its role in current production. Subcellular-localization studies suggested that OmcZS was the predominant extracellular form of OmcZ. N- and C-terminal amino acid sequence analysis of purified OmcZS and molecular weight measurements indicated that OmcZS is a cleaved product of OmcZL retaining all 8 hemes, including 1 heme with the unusual c-type heme-binding motif CX14CH. The purified OmcZS was remarkably thermally stable (thermal-denaturing temperature, 94.2°C). Redox titration analysis revealed that the midpoint reduction potential of OmcZS is approximately −220 mV (versus the standard hydrogen electrode [SHE]) with nonequivalent heme groups that cover a large reduction potential range (−420 to −60 mV). OmcZS transferred electrons in vitro to a diversity of potential extracellular electron acceptors, such as Fe(III) citrate, U(VI), Cr(VI), Au(III), Mn(IV) oxide, and the humic substance analogue anthraquinone-2,6-disulfonate, but not Fe(III) oxide. The biochemical properties and extracellular localization of OmcZ suggest that it is well suited for promoting electron transfer in current-producing biofilms of G. sulfurreducens.
Gomes, R, Batista A, Ortigueira M, Rato R, Baldeiras M.
2010.
Railscan: A Tool for the Detection and Quantification of Rail Corrugation. Emerging Trends in Technological Innovation. 314:401–408.
AbstractRail corrugation is a phenomenon that leads to a waving in the rails with wavelengths typically between 3 cm and 100 cm and amplitude levels of several microns. The genesis of this waving is complex. Rail corrugation is a recognized problem that leads to excess vibration on the rails and vehicles to a point of reducing their life span and compromising safety. In urban areas excess vibration noise is also a problem. A software tool was developed to analyze accelerometer signals acquired in the boggies of rail vehicles in order to quantify the rail corrugation according to their frequency and amplitude. A wavelet packet methodology was used in this work and compared with the One Third Octave Filter (OTOF) power representations, which is currently used in the industry. It is shown that the former produces better results.
Lopes, T.
2010.
Reabilitação Sustentável em Edificíos de Habitação. Faculdade de Ciências e Tecnologia . (
Amado, Miguel, Ed.)., Lisbon
AbstractCurrently, the buildings are one of the elements that mostly contribute to
environmental degradation.
Regarding the natural resources consumption and the environmental comfort, the
building efficiency level means that, actually, the same residential built environment can be
considered unsustainable.
Thereby, it is important to know, determine and identify the specific residential
buildings problems in order to contribute in solving this situation.
After knowing the major residential buildings problems and those causes, it is needed
to adapt the rehabilitation process to the traditional concept of sustainable construction, which
can be achieved by the evaluation and certification systems of the construction sustainability.
This thesis aims at contributing to the buildings rehabilitation process which it is
intended to be conducted in a sustainable method, based on the presented issue.
Ferreira, IMPLV, Pinho O, Monteiro D, Faria S, Cruz S, Perreira A, Roque ACA, Tavares P.
2010.
Short communication: effect of kefir grains on proteolysis of major milk proteins. Journal of Dairy Science. 93:27–31., Number 1
AbstractThe effect of kefir grains on the proteolysis of major milk proteins in milk kefir and in a culture of kefir grains in pasteurized cheese whey was followed by reverse {phase-HPLC} analysis. The reduction of kappa-, alpha-, and beta-caseins {(CN)}, alpha-lactalbumin {(alpha-LA)}, and beta-lactoglobulin {(beta-LG)} contents during 48 and 90 h of incubation of pasteurized milk {(100mL)} and respective cheese whey with kefir grains (6 and 12 g) at 20 degrees C was monitored. Significant proteolysis of {alpha-LA} and kappa-, alpha-, and beta-caseins was observed. The effect of kefir amount (6 and 12 {g/100mL)} was significant for {alpha-LA} and alpha- and {beta-CN.} {alpha-Lactalbumin} and {beta-CN} were more easily hydrolyzed than {alpha-CN.} No significant reduction was observed with respect to {beta-LG} concentration for 6 and 12 g of kefir in {100mL} of milk over 48 h, indicating that no significant proteolysis was carried out. Similar results were observed when the experiment was conducted over 90 h. Regarding the cheese whey kefir samples, similar behavior was observed for the proteolysis of {alpha-LA} and {beta-LG:} {alpha-LA} was hydrolyzed between 60 and 90% after 12h (for 6 and 12 g of kefir) and no significant {beta-LG} proteolysis occurred. The proteolytic activity of lactic acid bacteria and yeasts in kefir community was evaluated. Kefir milk prepared under normal conditions contained peptides from proteolysis of {alpha-LA} and kappa-, alpha-, and beta-caseins. Hydrolysis is dependent on the kefir:milk ratio and incubation time. {beta-Lactoglobulin} is not hydrolyzed even when higher hydrolysis time is used. Kefir grains are not appropriate as adjunct cultures to increase {beta-LG} digestibility in whey-based or whey-containing foods.