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2011
Garcia-Alvarez, B, Melero R, Dias FMV, Prates JAM, Fontes CMGA, Smith SP, Romao MJ, Carvalho AL, Llorca O.  2011.  Molecular Architecture and Structural Transitions of a Clostridium thermocellum Mini-Cellulosome. Journal of Molecular Biology. 407:571-580., Number 4 AbstractWebsite
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Baptista, {PV}, c}alo Dória G{\c, Quaresma P, Cavadas M, Neves {CS }, Gomes I, Eaton P, Pereira E, Franco R.  2011.  Nanoparticles in molecular diagnostics. Nanoparticles in Translational Science and Medicine. (Antonio Villaverde, Ed.).:427–488., Netherlands: Elsevier Abstract

The aim of this chapter is to provide an overview of the available and emerging molecular diagnostic methods that take advantage of the unique nanoscale properties of nanoparticles (NPs) to increase the sensitivity, detection capabilities, ease of operation, and portability of the biodetection assemblies. The focus will be on noble metal NPs, especially gold NPs, fluorescent NPs, especially quantum dots, and magnetic NPs, the three main players in the development of probes for biological sensing. The chapter is divided into four sections: a first section covering the unique physicochemical properties of NPs of relevance for their utilization in molecular diagnostics; the second section dedicated to applications of NPs in molecular diagnostics by nucleic acid detection; and the third section with major applications of NPs in the area of immunoassays. Finally, a concluding section highlights the most promising advances in the area and presents future perspectives.

Folgosa, F, Cordas CM, Santos JA, Pereira AS, Moura JJG, Tavares P, Moura I.  2011.  New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway. BIOCHEMICAL JOURNAL. {438}:{485-494}., Number {3} Abstract

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Magin, R, Ortigueira MD, Podlubny I, Trujillo J.  2011.  On the fractional signals and systems. Signal Processing. 91:350–371., Number 3: Elsevier AbstractWebsite

A look into fractional calculus and its applications from the signal processing point of view is done in this paper. A coherent approach to the fractional derivative is presented, leading to notions that are not only compatible with the classic but also constitute a true generalization. This means that the classic are recovered when the fractional domain is left. This happens in particular with the impulse response and transfer function. An interesting feature of the systems is the causality that the fractional derivative imposes. The main properties of the derivatives and their representations are presented. A brief and general study of the fractional linear systems is done, by showing how to compute the impulse, step and frequency responses, how to test the stability and how to insert the initial conditions. The practical realization problem is focussed and it is shown how to perform the input?ouput computations. Some biomedical applications are described.

Luis, AS, Alves VD, Romao MJ, Prates JAM, Fontes CMGA, Najmudin S.  2011.  Overproduction, purification, crystallization and preliminary X-ray characterization of a novel carbohydrate-binding module of endoglucanase Cel5A from Eubacterium cellulosolvens. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 67:491-493. AbstractWebsite
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Rosatella, AA, Afonso CAM, Branco LC.  2011.  Oxidation of Cyclohexene to trans-1,2-Cyclohexanediol Promoted by p-Toluenesulfonic Acid without Organic Solvents. Journal of Chemical Education. 88:1002-1003., Number 7 AbstractWebsite
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Gago, S, Bruno SM, Queiros DC, Valente AA, Goncalves IS, Pillinger M.  2011.  Oxidation of Ethylbenzene in the Presence of an MCM-41-Supported or Ionic Liquid-Standing Bischlorocopper(II) Complex. Catalysis Letters. 141:1009-1017., Number 7 AbstractWebsite
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Lima, JC, Rodriguez L.  2011.  Phosphine-Gold(I) Compounds as Anticancer Agents: General Description and Mechanisms of Action. Anti-Cancer Agents in Medicinal Chemistry. 11:921-928., Number 10 Abstract
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Gavara, R, Petrov V, Lopez V, Pina F.  2011.  Photochromism of naphthoflavylium. On the role of 4-OH hemiketal in flavylium network. Journal of Photochemistry and Photobiology a-Chemistry. 220:4-10., Number 1 AbstractWebsite
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Rodriguez, L, Lima JC, Pina F, Cacciapaglia R, Di Stefano S, Ruggi A.  2011.  Photophysical Study of Naphthalenophanes: Evidence of Adduct Formation with Molecular Oxygen. Journal of Physical Chemistry a. 115:123-127., Number 2 Abstract
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Bras, JLA, Correia MAS, Romao MJ, Prates JAM, Fontes CMGA, Najmudin S.  2011.  Purification, crystallization and preliminary X-ray characterization of the pentamodular arabinoxylanase CtXyl5A from Clostridium thermocellum. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 67:833-836. AbstractWebsite
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Palma, LB, Coito FV, Gil PS.  2011.  Real-time detection of oscillations in control loops. Power Engineering, Energy and Electrical Drives (POWERENG), 2011 International Conference on. :1–6.: IEEE Abstract

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Pereira, P, Helena Fino M, Coito F, Ventim-Neves M.  2011.  RF integrated inductor modeling and its application to optimization-based design. Analog Integrated Circuits and Signal Processing. :1–9.: Springer Abstract

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Almeida, R, Ortigueira MD, Batista AG, Ktonas P.  2011.  Sleep Spindles: Decomposition, Parameterization and Applications. 19th IEEE Conference on Signal Processing and Communications Applications. Abstract
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Bras, JLA, Cartmell A, Carvalho ALM, Verze G, Bayer EA, Vazana Y, Correia MAS, Prates JAM, Ratnaparkhe S, Boraston AB, Romao MJ, Fontes CMGA, Gilbert HJ.  2011.  Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 108:5237-5242., Number 13 AbstractWebsite
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Corvo, M, de Menezes SC, Magalhães TO, Seferin M, Einloft S, Casimiro T, Cabrita EJ.  2011.  Studying the Solubility of CO2 in Ionic Liquids Using High Pressure NMR. Abstract
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Costa, F, Coito F, Palma L.  2011.  Switched Unfalsified Multicontroller. Technological Innovation for Sustainability. :393–401.: Springer Abstract

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Neves, P, Gago S, Balula SS, Lopes AD, Valente AA, Cunha-Silva L, Almeida Paz FA, Pillinger M, Rocha J, Silva CM, Goncalves IS.  2011.  Synthesis and Catalytic Properties of Molybdenum(VI) Complexes with Tris(3,5-dimethyl-1-pyrazolyl)methane. Inorganic Chemistry. 50:3490-3500., Number 8 AbstractWebsite
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Gawande, MB, Branco PS, Parghi K, Shrikhande JJ, Pandey RK, Ghumman CAA, Bundaleski N, Teodoro OMND, Jayaram RV.  2011.  Synthesis and characterization of versatile MgO-ZrO2 mixed metal oxide nanoparticles and their applications. CATALYSIS SCIENCE & TECHNOLOGY. 1:1653-1664., Number 9 Abstract
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Santos-Silva, T, Mukhopadhyay A, Seixas JD, Bernardes GJL, Romao CC, Romao MJ.  2011.  Towards Improved Therapeutic CORMs: Understanding the Reactivity of CORM-3 with Proteins. Current Medicinal Chemistry. 18:3361-3366., Number 22 AbstractWebsite
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Palma, LB, Coito FV.  2011.  Tuning PCA controllers based on manual control data. Emerging Technologies & Factory Automation (ETFA), 2011 IEEE 16th Conference on. :1–4.: IEEE Abstract

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Baltazar, P, Vasconcelos VT, Vieira HT.  2011.  Typing Dynamic Roles in Multiparty Interaction. Simpósio de Informática (INForum). Abstract
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Coito, F, Palma LB.  2011.  Unfalsification based Fault Tolerant Controller. Emerging Technologies & Factory Automation (ETFA), 2011 IEEE 16th Conference on. :1–4.: IEEE Abstract

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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P\{$\backslash$textendash\}79400P\{$\backslash$textendash\}10. Abstract

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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. Proc. SPIE. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P–79400P–10. Abstract

Today there is a strong interest in the scientific and industrial community concerning the use of biopolymers for electronic applications, mainly driven by low-cost and disposable applications. Adding to this interest, we must recognize the importance of the wireless auto sustained and low energy consumption electronics dream. This dream can be fulfilled by cellulose paper, the lightest and the cheapest known substrate material, as well as the Earth's major biopolymer and of tremendous global economic importance. The recent developments of oxide thin film transistors and in particular the production of paper transistors at room temperature had contributed, as a first step, for the development of disposable, low cost and flexible electronic devices. To fulfil the wireless demand, it is necessary to prove the concept of self powered devices. In the case of paper electronics, this implies demonstrating the idea of self regenerated thin film paper batteries and its integration with other electronic components. Here we demonstrate this possibility by actuating the gate of paper transistors by paper batteries. We found that when a sheet of cellulose paper is covered in both faces with thin layers of opposite electrochemical potential materials, a voltage appears between both electrodes -paper battery, which is also self-regenerated. The value of the potential depends upon the materials used for anode and cathode. An open circuit voltage of 0.5V and a short-circuit current density of 1$μ$A/cm2 were obtained in the simplest structure produced (Cu/paper/Al). For actuating the gate of the paper transistor, seven paper batteries were integrated in the same substrate in series, supplying a voltage of 3.4V. This allows proper ON/OFF control of the paper transistor. Apart from that transparent conductive oxides can be also used as cathode/anode materials allowing so the production of thin film batteries with transparent electrodes compatible with flexible, invisible, self powered and wireless electronics.

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