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Submitted
Granadeiro, CM, Ribeiro SO, Kaczmarek AM, Cunha-Silva L, Almeida PL, Gago S, Van Deun R, de Castro B, Balula SS.  Submitted.  {A novel red emitting material based on polyoxometalate@periodic mesoporous organosilica}, {NOV 1}. {MICROPOROUS AND MESOPOROUS MATERIALS}. {234}:{248-256}. Abstract
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Bassani, DM, Cucinotta F, Bohne C, Basilio N, Lemon C, Allain C, Sundstrom V, Campagna S, Rohacova J, Ketteler Y, Ryan STJ, Vos J, de Silva AP, Slota M.  Submitted.  {Light activated molecular machines and logic gates: general discussion}. {FARADAY DISCUSSIONS}. {185}:{399-411}. Abstract
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Pikramenou, Z, Weinstein J, Pan Q, Lewis F, Bassani DM, Wuerthner F, Moucheron C, Slota M, Diaz-Moscoso A, Karlsson J, Basilio N, Adams D, Scandola F, Bohne C, Lemon C, Campagna S, Rohacova J, Ohashi K, Ploetz P-A, Monti F, Kelly JM, Keane P, Gibson E, Lemercier G, Ruggi A, Cucinotta F, Gust D, Bradberry S, Vos J, Pistolis G, Mauro M, Tuite E, De Cola L, Ceroni P, Maneiro M, Galoppini E, Gunnlaugsson T.  Submitted.  {Self-organization of photo-active nanostructures: general discussion}. {FARADAY DISCUSSIONS}. {185}:{529-548}. Abstract
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2024
Choroba, K, Zowislok B, Kula S, Machura B, Maron AM, Erfurt K, Cordeiro S, Baptista PV, Fernandes {AR}.  2024.  Optimization of Antiproliferative Properties of Triimine Copper(II) Complexes, nov. Journal Of Medicinal Chemistry. 67:19475–19502., Number 21: ACS - American Chemical Society Abstract

Cu(II) complexes with 2,2′:6′,2″-terpyridines (terpy) and 2,6-bis(thiazol-2-yl)pyridines (dtpy) with 1- or 2-naphtyl and methoxy-naphtyl were synthesized to elucidate the impact of the triimine core, naphtyl linking mode, and presence of methoxy groups on the antiproliferative activity of [CuCl2(Ln)]. Their antiproliferative effect was analyzed in ovarian (A2780) and colorectal (HCT116) carcinomas and colorectal carcinoma resistant to doxorubicin (HCT116-DoxR) cell lines and in normal human fibroblasts. Among all complexes, the 1- and 2-naphtyl substituted terpy Cu(II) complexes (Cu1a and Cu1b) showed the strongest cytotoxicity, namely, in HCT116-DoxR 2Dcells and were also capable of inducing the loss of cell viability in 3D HCT116-DoxR spheroids. Their intracellular localization, capability to increase reactive oxygen species (ROS), and interaction with DNA (nonintercalative mode) trigger oxidative DNA cleavage leading to cell death by apoptosis and autophagy. Cu1a and Cu1b do not show in vivo toxicity in a chicken embryo and can interact with bovine serum albumin (BSA).

Choroba, K, Zowiślok B, Kula S, Machura B, Maroń {AM }, Erfurt K, Marques C, Cordeiro S, Baptista {PV}, Fernandes {AR}.  2024.  Optimization of Antiproliferative Properties of Triimine Copper(II) Complexes, nov. Journal Of Medicinal Chemistry. : ACS - American Chemical Society Abstract

Cu(II) complexes with 2,2':6',2″-terpyridines (terpy) and 2,6-bis(thiazol-2-yl)pyridines (dtpy) with 1- or 2-naphtyl and methoxy-naphtyl were synthesized to elucidate the impact of the triimine core, naphtyl linking mode, and presence of methoxy groups on the antiproliferative activity of [CuCl 2(L n )]. Their antiproliferative effect was analyzed in ovarian (A2780) and colorectal (HCT116) carcinomas and colorectal carcinoma resistant to doxorubicin (HCT116-DoxR) cell lines and in normal human fibroblasts. Among all complexes, the 1- and 2-naphtyl substituted terpy Cu(II) complexes ( Cu1a and Cu1b) showed the strongest cytotoxicity, namely, in HCT116-DoxR 2Dcells and were also capable of inducing the loss of cell viability in 3D HCT116-DoxR spheroids. Their intracellular localization, capability to increase reactive oxygen species (ROS), and interaction with DNA (nonintercalative mode) trigger oxidative DNA cleavage leading to cell death by apoptosis and autophagy. Cu1a and Cu1b do not show in vivo toxicity in a chicken embryo and can interact with bovine serum albumin (BSA).

Oliveira, AR, Mota C, Vilela-Alves G, Manuel RR, Pedrosa N, Fourmond V, Klymanska K, Léger C, Guigliarelli B, Romão MJ, Cardoso Pereira IA.  2024.  An allosteric redox switch involved in oxygen protection in a CO2 reductase, 2024. Nat Chem Biol. 20(1):111-119. AbstractWebsite

Metal-dependent formate dehydrogenases reduce CO2 with high efficiency and selectivity, but are usually very oxygen sensitive. An exception is Desulfovibrio vulgaris W/Sec-FdhAB, which can be handled aerobically, but the basis for this oxygen tolerance was unknown. Here we show that FdhAB activity is controlled by a redox switch based on an allosteric disulfide bond. When this bond is closed, the enzyme is in an oxygen-tolerant resting state presenting almost no catalytic activity and very low formate affinity. Opening this bond triggers large conformational changes that propagate to the active site, resulting in high activity and high formate affinity, but also higher oxygen sensitivity. We present the structure of activated FdhAB and show that activity loss is associated with partial loss of the metal sulfido ligand. The redox switch mechanism is reversible in vivo and prevents enzyme reduction by physiological formate levels, conferring a fitness advantage during O2 exposure.

Esmear, T, Twilley D, Thipe {VC}, Katti {KV }, Mandiwana V, Kalombo {ML}, Ray {SS}, Rikhotso-Mbungela R, Bovilla {VR}, Madhunapantula {SR}, Langhanshova L, Roma-Rodrigues C, Fernandes {AR}, Baptista P, Hlati S, Pretorius J, Lall N.  2024.  Anti-inflammatory and antiproliferative activity of Helichrysum odoratissimum sweet. Against lung cancer. South African Journal of Botany. 166:525–538.: Elsevier Abstract

Lung cancer remains the top killing cancer worldwide despite advances in treatment. Seven ethanolic plant extracts were selected and evaluated for their antiproliferative activity against the two main types of lung cancers: non-small cell (A549) and small cell lung cancer cells (SHP-77). An ethanolic extract of Helichrysum odoratissimum Sweet (HO) showed significant antiproliferative activity against lung cancer, with a fifty percent inhibitory concentration (IC50) of 83.43 ± 1.60 µg/mL (A549), 49.46 ± 0.48 µg/mL (SHP-77) and 50.71 ± 2.27 µg/mL, against normal lung epithelial cells (MRC-5), resulting in a selectivity index (SI) value of 0.61 on A549 cells and 1.03 on SHP-77 cells, which was compared to the positive drug control, actinomycin D where the SI values were found to be 2 and 0.25 against A549 and SHP-77 cells, respectively. Against murine macrophages (RAW 264.7) and hepatocytes (HepG2), the HO ethanolic extract showed IC50 values of 60.15 ± 1.98 µg/mL and 23.61 ± 1.06 µg/mL, respectively. Microscopy showed that the HO ethanolic extract induced apoptosis in the A549 and HepG2 cells at 50 µg/mL and 300 µg/mL, respectively. The HO ethanolic extract, furthermore, inhibited the pro-inflammatory enzymes, cyclooxygenase 2 (COX-2) and 5-lipoxygenase (5-LOX) with IC50 values of 7.94 ± 3.84 µg/mL and 2.08 ± 1.35 µg/mL, respectively, whereas the positive controls Ibuprofen (COX-2) and Zileuton (5-LOX) showed IC50 values of 0.85 ± 0.14 µg/mL and 0.06 ± 0.05 µg/mL, respectively. The activity of NAD(P)H quinone oxidoreductase-1 (NQO1), which is a direct target of nuclear factor erythroid-2-related factor-2 (NRF2), was significantly inhibited in the A549 cells by the HO ethanolic extract (at 125 µg/mL) when compared to the positive control, brusatol (at 500 nM). Using the ex ovo yolk sac membrane (YSM) assay, the HO ethanolic extract (at 18.5 µg/egg) showed a 31.65 ± 12.80% inhibition of blood vessel formation. This is the first report of the noteworthy antiproliferative activity of the HO ethanolic extract on lung cancer cells including its potential to target several enzymes associated with inflammation and therefore, should be considered for further analysis.

Mota, C, Webster M, Saidi M, Kapp U, Zubieta C, Giachin G, Manso JA, de Sanctis D.  2024.  Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539. bioRxiv. : Cold Spring Harbor Laboratory AbstractWebsite

The accumulation of manganese ions is crucial for scavenging reactive oxygen species (ROS) and protecting the proteome of Deinococcus radiodurans (Dr). However, metal homeostasis still needs to be tightly regulated to avoid toxicity. DR2539, a dimeric transcription regulator, plays a key role in Dr manganese homeostasis. Despite comprising three well-conserved domains: a DNA binding domain, a dimerization domain, and an ancillary domain, both the metal ion activation mechanism and the DNA recognition mechanism remain elusive. In this study, we present biophysical analyses and the structure of the dimerization and DNA binding domains of DR2539 in its holo form and in complex with the 21 bp pseudo-palindromic repeat of the dr1709 promotor region. These findings shed light into the activation and recognition mechanisms. The dimer presents eight manganese binding sites that induce structural conformations essential for DNA binding. The analysis of the protein-DNA interfaces elucidates the significance of Tyr59 and helix H3 sequence in the interaction with the DNA. Finally, the structure in solution as determined by small angle X-ray scattering experiments and supported by AlphaFold modelling provides a model illustrating the conformational changes induced upon metal binding.Competing Interest StatementThe authors have declared no competing interest.

Choroba, K, Zowiślok B, Kula S, Machura B, Maroń {AM }, Erfurt K, Marques C, Cordeiro S, Baptista {PV}, Fernandes {AR}.  2024.  Optimization of Antiproliferative Properties of Triimine Copper(II) Complexes. Journal Of Medicinal Chemistry. 67:19475–19502., Number 21: ACS - American Chemical Society Abstract

Cu(II) complexes with 2,2′:6′,2″-terpyridines (terpy) and 2,6-bis(thiazol-2-yl)pyridines (dtpy) with 1- or 2-naphtyl and methoxy-naphtyl were synthesized to elucidate the impact of the triimine core, naphtyl linking mode, and presence of methoxy groups on the antiproliferative activity of [CuCl2(Ln)]. Their antiproliferative effect was analyzed in ovarian (A2780) and colorectal (HCT116) carcinomas and colorectal carcinoma resistant to doxorubicin (HCT116-DoxR) cell lines and in normal human fibroblasts. Among all complexes, the 1- and 2-naphtyl substituted terpy Cu(II) complexes (Cu1a and Cu1b) showed the strongest cytotoxicity, namely, in HCT116-DoxR 2Dcells and were also capable of inducing the loss of cell viability in 3D HCT116-DoxR spheroids. Their intracellular localization, capability to increase reactive oxygen species (ROS), and interaction with DNA (nonintercalative mode) trigger oxidative DNA cleavage leading to cell death by apoptosis and autophagy. Cu1a and Cu1b do not show in vivo toxicity in a chicken embryo and can interact with bovine serum albumin (BSA).

2022
Twilley, D, Thipe {VC }, Kishore N, Bloebaum P, Roma-Rodrigues C, Baptista {PV}, Fernandes {AR}, Selepe {MA }, Langhansova L, Katti K, Lall N.  2022.  Antiproliferative Activity of Buddleja saligna (Willd.) against Melanoma and In Vivo Modulation of Angiogenesis, nov. Pharmaceuticals. 15, Number 12: Molecular Diversity Preservation International (MDPI) Abstract

Melanoma cells secrete pro-angiogenic factors, which stimulates growth, proliferation and metastasis, and therefore are key therapeutic targets. Buddleja saligna (BS), and an isolated triterpenoid mixture (DT-BS-01) showed a fifty percent inhibitory concentration (IC50) of 33.80 ± 1.02 and 5.45 ± 0.19 µg/mL, respectively, against melanoma cells (UCT-MEL-1) with selectivity index (SI) values of 1.64 and 5.06 compared to keratinocytes (HaCat). Cyclooxygenase-2 (COX-2) inhibition was observed with IC50 values of 35.06 ± 2.96 (BS) and 26.40 ± 4.19 µg/mL (DT-BS-01). BS (30 µg/mL) significantly inhibited interleukin (IL)-6 (83.26 ± 17.60%) and IL-8 (100 ± 0.2%) production, whereas DT-BS-01 (5 µg/mL) showed 51.07 ± 2.83 (IL-6) and 0 ± 6.7% (IL-8) inhibition. Significant vascular endothelial growth factor (VEGF) inhibition, by 15.84 ± 4.54 and 12.21 ± 3.48%, respectively, was observed. In the ex ovo chick embryo yolk sac membrane assay (YSM), BS (15 µg/egg) significantly reduced new blood vessel formation, with 53.34 ± 11.64% newly formed vessels. Silver and palladium BS nanoparticles displayed noteworthy SI values. This is the first report on the significant anti-angiogenic activity of BS and DT-BS-01 and should be considered for preclinical trials as there are currently no US Food and Drug Administration (FDA) approved drugs to inhibit angiogenesis in melanoma.

Martins, RA, Carlos E, Deuermeier J, Pereira ME, Martins R, Fortunato E, Kiazadeh A.  2022.  Emergent solution based IGZO memristor towards neuromorphic applications, 2022///. Journal of Materials Chemistry C. 10(6):1991-1998.: Royal Society of Chemistry AbstractWebsite

Solution-based memristors are emergent devices, due to their potential in electrical performance for neuromorphic computing combined with simple and cheap fabrication processes.

Oliveira, AR, Mota C, Klymanska K, Biaso F, Romão MJ, Guigliarelli B, Pereira IC.  2022.  Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis, 2022. ACS Chemical BiologyACS Chemical Biology. 17(7):1901-1909.: American Chemical Society AbstractWebsite

Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S]1+ clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S]1+ centers range between −250 and −530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.

da Rosa, RR, Silva PES, Saraiva DV, Kumar A, de Sousa AMP, Sebastião P, Fernandes SN, Godinho MH.  2022.  Cellulose Nanocrystal Aqueous Colloidal Suspensions: Evidence of Density Inversion at the Isotropic-liquid Crystal Phase Transition. Advanced Materials. n/a:2108227., Number n/a AbstractWebsite

Abstract The colloidal suspensions of aqueous cellulose nanocrystals (CNCs) are known to form liquid crystalline systems above certain critical concentrations. From an isotropic phase; tactoid formation; growth; and sedimentation have been determined as the genesis of a high-density cholesteric phase; which after drying; originates solid iridescent films. Herein; we report the coexistence of a liquid crystal upper phase and an isotropic bottom phase in CNC aqueous suspensions at isotropic-nematic phase separation for the first time. Furthermore; isotropic spindle-like domains are observed in the low-density liquid crystalline phase; and high-density liquid crystalline phases are also prepared. The CNCs isolated from the low- and high-density liquid crystalline phases are found to have similar average lengths; diameters; and surface charges. The existence of a liquid crystalline low-density phase is explained by the presence of air dissolved in the water present within the CNCs. The air dissolves out when the water solidifies into ice and remains within the CNCs. The self-adjustment of the cellulose chain conformation enables the entrapment of air within the CNCs and CNC buoyancy in aqueous suspensions. This article is protected by copyright. All rights reserved

Shlapa, Y, Solopan S, Sarnatskaya V, Siposova K, Garcarova I, Veltruska K, Timashkov I, Lykhova O, Kolesnik D, Musatov A, Nikolaev V, Belous A.  2022.  Cerium dioxide nanoparticles synthesized via precipitation at constant pH: Synthesis, physical-chemical and antioxidant properties. Colloids and Surfaces B: Biointerface. 220(112960 )
Candeias, M, Moniz AB, Boavida N.  2022.  Digital Transformation in the Automotive Sector in Portugal: Data Analysis of Industrial R&D Projects. Inclusive Futures for Eu- rope: Addressing the Digitalisation Challenges, Inclusive Futures for Europe. (Kirov, V., Malamin, B., Eds.).:57-72., Sofia: Marin Drinov Publishing House of BAS
Rajnak, M, Franko M, Paulovicova K, Karpets M, Parekh K, Upadhyay R, Kurimsky J, Dolnik B, Cimbala R, Havran P, Timko M, Kopcansky P.  2022.  Effect of ferrofluid magnetization on transformer temperature rise. Journal of Physics D: Applied Physics. 55(34)
Karpets, M, Rajnak M, Petrenko VI, Gapon I, Avdeev M, Bulavin L, Timko M, Kopcansky P.  2022.  Electric field-induced assembly of magnetic nanoparticles from dielectric ferrofluids on planar interface. Journal of Molecular Liquids. 362(119773)
Molcan, M, Safarik I, Prochazkova J, Kopcansky P, Timko M, Skumiel A.  2022.  The impact of alternating and rotating regimes on the heating characteristics of magnetic bacterial cellulose structure. Journal of Magnetism and Magnetic Materials. 563(170015)
Skumiel, A, Kocansky P, Timko M, Molcan M, Paulovicova K, Wojciechowski R.  2022.  The Influence of a Rotating Magnetic Field on the Thermal Effect in Magnetic Fluid. International Journal of Thermal Sciences. 171(107258)
Siposova, K, Petrenko VI, Garcarova I, Sedlakova D, Almasy L, Kyzyma OA, Kriechbaum M, Musatov A.  2022.  The intriguing dose-dependent effect of selected amphiphilic compounds on insulin amyloid aggregation: Focus on a cholesterol-based detergent. Chobimalt. 9(955282)
Karamash, M, Stumpe M, Dengjel J, Salgueiro CA, Giese B, Fromm KM.  2022.  Reduction Kinetic of Water Soluble Metal Salts by Geobacter sulfurreducens: Fe2+/Hemes Stabilize and Regulate Electron Flux Rates. Frontiers in Microbiology. 13 AbstractWebsite

Geobacter sulfurreducens is a widely applied microorganism for the reduction of toxic metal salts, as an electron source for bioelectrochemical devices, and as a reagent for the synthesis of nanoparticles. In order to understand the influence of metal salts, and of electron transporting, multiheme c-cytochromes on the electron flux during respiration of G. sulfurreducens, the reduction kinetic of Fe3+, Co3+, V5+, Cr6+, and Mn7+ containing complexes were measured. Starting from the resting phase, each G. sulfurreducens cell produced an electron flux of 3.7 × 105 electrons per second during the respiration process. Reduction rates were within ± 30% the same for the 6 different metal salts, and reaction kinetics were of zero order. Decrease of c-cytochrome concentrations by downregulation and mutation demonstrated that c-cytochromes stabilized respiration rates by variation of their redox states. Increasing Fe2+/heme levels increased electron flux rates, and induced respiration flexibility. The kinetic effects parallel electrochemical results of G. sulfurreducens biofilms on electrodes, and might help to optimize bioelectrochemical devices.

Sarnatskaya, V, Shlapa Y, Lykhova A, Brieieva O, Prokopenko I, Sidorenko A, Solopan S, Kolesnik D, Belous A, Nikolaev V.  2022.  Structure and Biological Activity of Particles Produced from Highly Activated Carbon Adsorbent. Heliyon. 8(3)
2021
Kordestani, N, {Amiri Rudbari} H, Fernandes {AR}, Raposo {LR }, Luz A, Baptista {PV}, Bruno G, Scopelliti R, Fateminia Z, Micale N, Tumanov N, Wouters J, {Abbasi Kajani} A, Bordbar {AK}.  2021.  Copper(ii) complexes with tridentate halogen-substituted Schiff base ligands: synthesis, crystal structures and investigating the effect of halogenation, leaving groups and ligand flexibility on antiproliferative activities, mar. Dalton Transactions. 50:3990–4007., Number 11: RSC - Royal Society of Chemistry Abstract

To investigate the effect of different halogen substituents and leaving groups and the flexibility of ligands on the anticancer activity of copper complexes, sixteen copper(ii) complexes with eight different tridentate Schiff-base ligands containing pyridine and 3,5-halogen-substituted phenol moieties were synthesized and characterized by spectroscopic methods. Four of these complexes were also characterized by X-ray crystallography. The cytotoxicity of the complexes was determined in three different tumor cell lines (i.e.the A2780 ovarian, HCT116 colorectal and MCF7 breast cancer cell line) and in a normal primary fibroblast cell line. Complexes were demonstrated to induce a higher loss of cell viability in the ovarian carcinoma cell line (A2780) with respect to the other two tumor cell lines, and therefore the biological mechanisms underlying this loss of viability were further investigated. Complexes with ligandL1(containing a 2-pycolylamine-type motif) were more cytotoxic than complexes withL2(containing a 2-(2-pyridyl)ethylamine-type motif). The loss of cell viability in A2780 tumor cells was observed in the orderCu(Cl2-L1)NO3>Cu(Cl2-L1)Cl>Cu(Br2-L1)Cl>Cu(BrCl-L1)Cl. All complexes were able to induce reactive oxygen species (ROS) that could be related to the loss of cell viability. ComplexesCu(BrCl-L1)ClandCu(Cl2-L1)NO3were able to promote A2780 cell apoptosis and autophagy and for complexCu(BrCl-L1)Clthe increase in apoptosis was due to the intrinsic pathway.Cu(Cl2-L1)ClandCu(Br2-L1)Clcomplexes lead to cellular detachment allowing to correlate with the results of loss of cell viability. Despite the ability of theCu(BrCl-L1)Clcomplex to induce programmed cell death in A2780 cells, its therapeutic window turned out to be low making theCu(Cl2-L1)NO3complex the most promising candidate for additional biological applications.

Kumar, A, Cruz C, Figueirinhas JL, Sebastião PJ, Trindade AC, Fernandes SN, Godinho MH, Fossum JO.  2021.  Water Dynamics in Composite Aqueous Suspensions of Cellulose Nanocrystals and a Clay Mineral Studied through Magnetic Resonance Relaxometry, 2021. The Journal of Physical Chemistry BThe Journal of Physical Chemistry B. 125(46):12787-12796.: American Chemical Society AbstractWebsite
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