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2013
Geng, Y, Almeida PL, Fernandes SN, Cheng C, Palffy-Muhoray P, Godinho MH.  2013.  A cellulose liquid crystal motor: a steam engine of the second kind, 2013. 3(1):1028. AbstractWebsite

The salient feature of liquid crystal elastomers and networks is strong coupling between orientational order and mechanical strain. Orientational order can be changed by a wide variety of stimuli, including the presence of moisture. Changes in the orientation of constituents give rise to stresses and strains, which result in changes in sample shape. We have utilized this effect to build soft cellulose-based motor driven by humidity. The motor consists of a circular loop of cellulose film, which passes over two wheels. When humid air is present near one of the wheels on one side of the film, with drier air elsewhere, rotation of the wheels results. As the wheels rotate, the humid film dries. The motor runs so long as the difference in humidity is maintained. Our cellulose liquid crystal motor thus extracts mechanical work from a difference in humidity.

Rosado, LS, Gonzalez JC, Santos TG, Ramos PM, Piedade M.  2013.  Geometric optimization of a differential planar eddy currents probe for non-destructive testing, 2013. Sensors and Actuators, A: Physical. 197:96-105. AbstractWebsite
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Gago, S, Fonseca IM, Parola AJ.  2013.  Hybrid mesoporous silica grafted with photoisomerizable 2-hydroxychalcones, 2013. Microporous and Mesoporous Materials. 180:40-47. AbstractWebsite

Hybrid photochromic mesoporous materials based on MCM-41 and SBA-15 were synthesized by covalent attachment of 3'-butoxy-7-hydroxyflavylium (Fl-OH) and 3'-butoxy-7-metoxyflavylium (Fl-OCH3) hydrogensulfates. The pristine materials were initially grafted with 3-chloropropyl groups, reacted with 3'-hydroxyacetophenone and finally condensed with appropriate salicylaldehydes to yield the new hybrids MCM-41-Fl-OH and SBA-15-Fl-OCH3. The materials were characterized by powder X-ray diffraction, N-2 adsorption, solid-state C-13 CPMAS NMR spectroscopy, and thermogravimetric and elemental analyses, which confirm the successful covalent bonding of the flavylium moieties with loadings of 16.90 +/- 0.05% and 11.78 +/- 0.04% (w/w) for MCM-41-Fl-OH and SBA-15-OCH3, respectively. Flavylium compounds originate in solution a multiequilibria reaction network than can be actuated by pH and light, defining pH-coupled photochromic systems. The new hybrids show pH-dependent reflectance spectra resembling those observed in solution, but shifted to higher pH ranges, indicating a higher stability of the grafted flavylium cations. Irradiation of these materials equilibrated at adequate pH values where the photoisomerizable trans-chalcones predominate shows formation of the respective flavylium cations that recover back to the initial compositions upon standing in the dark, leading these new organic-inorganic hybrids as pH-dependent photochromic materials. (C) 2013 Elsevier Inc. All rights reserved.

Geng, Y, Seč D, Almeida PL, Lavrentovich OD, Žumer S, Godinho MH.  2013.  Liquid crystal necklaces: cholesteric drops threaded by thin cellulose fibres, 2013. Soft Matter. 9(33):7928-7933.: The Royal Society of Chemistry AbstractWebsite

Liquid crystals in confined geometries exhibit numerous complex structures often including topological defects that are controlled by the nematic elasticity, chirality and surface anchoring. In this work, we study the structures of cholesteric droplets pierced by cellulose fibres with planar anchoring at droplet and fibre surfaces. By varying the temperature we demonstrate the role of twisting power and droplet diameter on the equilibrium structures. The observed structures are complemented by detailed numerical simulations of possible director fields decorated by defects. Three distinct structures, a bipolar and two ring configurations, are identified experimentally and numerically. Designing cholesteric liquid crystal microdroplets on thin long threads opens new routes to produce fibre waveguides decorated with complex microresonators.

Coutinho, ML, Miller AZ, Gutierrez-Patricio S, Hernandez-Marine M, Gomez-Bolea A, Rogerio-Candelera MA, Philips AJL, Jurado V, Saiz-Jimenez C, Macedo MF.  2013.  Microbial communities on deteriorated artistic tiles from Pena National Palace (Sintra, Portugal), 2013. International Biodeterioration and Biodegradation. 84:322-332. AbstractWebsite
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Miranda, RM, Santos TG, Gandra J, Lopes N, Silva RJC.  2013.  Reinforcement strategies for producing functionally graded materials by friction stir processing in aluminium alloys, 2013. Journal of Materials Processing Technology. 213(9):1609-1615. AbstractWebsite
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Geng, Y, Almeida PL, Feio GM, Figueirinhas JL, Godinho MH.  2013.  Water-Based Cellulose Liquid Crystal System Investigated by Rheo-NMR, 2013. MacromoleculesMacromolecules. 46(11):4296-4302.: American Chemical Society AbstractWebsite

Water-based cellulose cholesteric liquid crystalline phases at rest can undergo structural changes induced by shear flow. This reflects on the deuterium spectra recorded when the system is investigated by rheo-nuclear magnetic resonance (rheo-NMR) techniques. In this work, the model system hydroxypropylcellulose (HPC)+water is revisited using rheo-NMR to clarify unsettled points regarding its behavior under shear and in relaxation. The NMR spectra allow the identification of five different stable ordering states, within shear and relaxation, which are well integrated in a mesoscopic picture of the system’s structural evolution under shear and relaxation. This picture emerging from the large body of studies available for this system by other experimental techniques, accounts well for the NMR data and is in good agreement with the three distinct regions of steady shear flow recognized for some lyotropic LC polymers. Shear rates in between 0.1 and 1.0 s–1 where investigated using a Taylor–Couette flow and deuterated water was used as solvent for the deuterium NMR (DNMR) analysis.Water-based cellulose cholesteric liquid crystalline phases at rest can undergo structural changes induced by shear flow. This reflects on the deuterium spectra recorded when the system is investigated by rheo-nuclear magnetic resonance (rheo-NMR) techniques. In this work, the model system hydroxypropylcellulose (HPC)+water is revisited using rheo-NMR to clarify unsettled points regarding its behavior under shear and in relaxation. The NMR spectra allow the identification of five different stable ordering states, within shear and relaxation, which are well integrated in a mesoscopic picture of the system’s structural evolution under shear and relaxation. This picture emerging from the large body of studies available for this system by other experimental techniques, accounts well for the NMR data and is in good agreement with the three distinct regions of steady shear flow recognized for some lyotropic LC polymers. Shear rates in between 0.1 and 1.0 s–1 where investigated using a Taylor–Couette flow and deuterated water was used as solvent for the deuterium NMR (DNMR) analysis.

Pimentel, A, Gamboa H, Cunha S, Correia A.  2013.  Algorithm for testing behavioural phenotypes in a Zebrafish model of Parkinson's Disease. Proceedings of Biosignals - 6th International Conference on Bio-Inspired and Signal Processing (BIOSIGNALS 2013). , Barcelona, Spain
Baptista, AC, Ferreira I, Borges J.  2013.  Cellulose-based bioelectronic devices. Cellulose - Medical, Pharmaceutical and Electronic Applications. (Theo van de Ven, Louis Godbout, Eds.)., Number 4: InTech
Lajn, Alexander, von Wenckstern, Holger, Grundmann, Marius, Wagner, Gerald, Barquinha, Fortunato, Martins R.  2013.  Comparative study of transparent rectifying contacts on semiconducting oxide single crystals and amorphous thin films. Journal of Applied Physics. 113
Henriques, MX, Catalão MJ, Figueiredo J, Gomes JP, Filipe SR.  2013.  Construction of improved tools for protein localization studies in Streptococcus pneumoniae. PLoS One. 8:e55049.
Cordeiro, M, Giestas L, Lima JC, Baptista P.  2013.  Coupling an universal primer to SBE combined spectral codification strategy for single nucleotide polymorphism analysis. Journal of Biotechnology. 168:90-94., Number 1 Abstract

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Nandy, Suman, Gonçalves G, Pinto, Joana, Busani, Tito, Figueiredo, V., Pereira, Paiva Martins RF, Fortunato E.  2013.  Current transport mechanism at metal-semiconductor nanoscale interfaces based on ultrahigh density arrays of p-type NiO nano-pillars. Nanoscale. 5:11699-11709.
Schmolka, N, Serre K, Grosso AR, Rei M, Pennington DJ, Gomes AQ, Silva-santos B.  2013.  Epigenetic and transcriptional signatures of stable versus plastic differentiation of proinflammatory γδT cell subsets.. Nature immunology. 14:1093–1100., Number 10: Nature Publishing Group AbstractWebsite

Two distinct subsets of γδ T cells that produce interleukin 17 (IL-17) (CD27(-) γδ T cells) or interferon-γ (IFN-γ) (CD27(+) γδ T cells) develop in the mouse thymus, but the molecular determinants of their functional potential in the periphery remain unknown. Here we conducted a genome-wide characterization of the methylation patterns of histone H3, along with analysis of mRNA encoding transcription factors, to identify the regulatory networks of peripheral IFN-γ-producing or IL-17-producing γδ T cell subsets in vivo. We found that CD27(+) γδ T cells were committed to the expression of Ifng but not Il17, whereas CD27(-) γδ T cells displayed permissive chromatin configurations at loci encoding both cytokines and their regulatory transcription factors and differentiated into cells that produced both IL-17 and IFN-γ in a tumor microenvironment.

Rodrigues, R, Grosso AR, Moita L.  2013.  Genome-wide analysis of alternative splicing during dendritic cell response to a bacterial challenge. PloS one. 8:e61975., Number 4 AbstractWebsite

The immune system relies on the plasticity of its components to produce appropriate responses to frequent environmental challenges. Dendritic cells (DCs) are critical initiators of innate immunity and orchestrate the later and more specific adaptive immunity. The generation of diversity in transcriptional programs is central for effective immune responses. Alternative splicing is widely considered a key generator of transcriptional and proteomic complexity, but its role has been rarely addressed systematically in immune cells. Here we used splicing-sensitive arrays to assess genome-wide gene- and exon-level expression profiles in human DCs in response to a bacterial challenge. We find widespread alternative splicing events and splicing factor transcriptional signatures induced by an E. coli challenge to human DCs. Alternative splicing acts in concert with transcriptional modulation, but these two mechanisms of gene regulation affect primarily distinct functional gene groups. Alternative splicing is likely to have an important role in DC immunobiology because it affects genes known to be involved in DC development, endocytosis, antigen presentation and cell cycle arrest.

Carvalho, S, Raposo AC, Martins FB, Grosso AR, Sridhara SC, Rino J, Carmo-fonseca M, de Almeida SF.  2013.  Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription. Nucleic acids research. 41:2881–93., Number 5 AbstractWebsite

Histone H3 of nucleosomes positioned on active genes is trimethylated at Lys36 (H3K36me3) by the SETD2 (also termed KMT3A/SET2 or HYPB) methyltransferase. Previous studies in yeast indicated that H3K36me3 prevents spurious intragenic transcription initiation through recruitment of a histone deacetylase complex, a mechanism that is not conserved in mammals. Here, we report that downregulation of SETD2 in human cells leads to intragenic transcription initiation in at least 11% of active genes. Reduction of SETD2 prevents normal loading of the FACT (FAcilitates Chromatin Transcription) complex subunits SPT16 and SSRP1, and decreases nucleosome occupancy in active genes. Moreover, co-immunoprecipitation experiments suggest that SPT16 is recruited to active chromatin templates, which contain H3K36me3-modified nucleosomes. Our results further show that within minutes after transcriptional activation, there is a SETD2-dependent reduction in gene body occupancy of histone H2B, but not of histone H3, suggesting that SETD2 coordinates FACT-mediated exchange of histone H2B during transcription-coupled nucleosome displacement. After inhibition of transcription, we observe a SETD2-dependent recruitment of FACT and increased histone H2B occupancy. These data suggest that SETD2 activity modulates FACT recruitment and nucleosome dynamics, thereby repressing cryptic transcription initiation.

Paes de Sousa, PM, Grazina R, Barbosa ADS, de Castro B, Moura JJG, Cunha-Silva L, Salete S.  2013.  Insights into the electrochemical behaviour of composite materials: Monovacant polyoxometalates porous metal-organic framework. Electrochim Acta. 87:853-859.
Gromicho, M, Magalhaes M, Torres F, Dinis J, Fernandes AR, Rendeiro P, Tavares P, Laires A, Rueff J, Rodrigues AS.  2013.  Instability of mRNA expression signatures of drug transporters in chronic myeloid leukemia patients resistant to imatinib. Oncol Rep. 29(2):741-50.13gromichoor.pdf
Grazina, R, Pauleta S, Moura JJG, Moura I.  2013.  Iron-sulfur centers: New roles for ancient metal sites. Comprehensive Inorganic Chemistry II, Vol. 3: Bioinorganic Fundamentals and Applications: Metals in Natural Living Systems and Metals in Toxicology and Medicine. :103-148., Oxford: Elsevier
Marangon, J, Correia HD, Brondino CD, Moura JJG, Romao MJ, Gonzalez PJ, Santos-Silva T.  2013.  Kinetic and structural studies of aldehyde oxidoreductase from Desulfovibrio gigas reveal a dithiolene-based chemistry for enzyme activation and inhibition by H2O2. PLoS One. 8:e83234.
Parthiban, S., Elangovan, E., Nayak, Pradipta K., Gonçalves, G., Nunes, D., Pereira, Barquinha, Busani, Tito, Fortunato, Martins R.  2013.  Performances of Microcrystalline Zinc Tin Oxide Thin-Film Transistors Processed by Spray Pyrolysis. Journal of Display Technology, . 9(10):825-831.
Rodrigues, L. C., Silva, M. A. G., Smith, Michael J., Gonçalves, G., Fortunato E.  2013.  Preparation and Characterization of Hybrid Oxyethylene/Siloxane Electrolyte Systems. Electroanalysis. 25(2):515–522.
Gouveia, JP, Seixas J, Labriet M, Fortes P, Gargiulo M.  2013.  Prospective scenarios for the adoption of CCS technologies in the Iberian Peninsula. Sustainable Energy Technologies and Assessments. 2:31–41. AbstractWebsite

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Lanca, T, Costa MF, Goncalves-Sousa N, Rei M, Grosso AR, Penido C, Silva-Santos B.  2013.  Protective role of the inflammatory CCR2/CCL2 chemokine pathway through recruitment of type 1 cytotoxic γδ T lymphocytes to tumor beds. J Immunol. 190:6673–6680., Number 12 AbstractWebsite

Tumor-infiltrating lymphocytes (TILs) are important prognostic factors in cancer progression and key players in cancer immunotherapy. Although γδ T lymphocytes can target a diversity of tumor cell types, their clinical manipulation is hampered by our limited knowledge of the molecular cues that determine γδ T cell migration toward tumors in vivo. In this study we set out to identify the chemotactic signals that orchestrate tumor infiltration by γδ T cells. We have used the preclinical transplantable B16 melanoma model to profile chemokines in tumor lesions and assess their impact on γδ TIL recruitment in vivo. We show that the inflammatory chemokine CCL2 and its receptor CCR2 are necessary for the accumulation of γδ TILs in B16 lesions, where they produce IFN-γ and display potent cytotoxic functions. Moreover, CCL2 directed γδ T cell migration in vitro toward tumor extracts, which was abrogated by anti-CCL2 neutralizing Abs. Strikingly, the lack of γδ TILs in TCRδ-deficient but also in CCR2-deficient mice enhanced tumor growth in vivo, thus revealing an unanticipated protective role for CCR2/CCL2 through the recruitment of γδ T cells. Importantly, we demonstrate that human Vδ1 T cells, but not their Vδ2 counterparts, express CCR2 and migrate to CCL2, whose expression is strongly deregulated in multiple human tumors of diverse origin, such as lung, prostate, liver, or breast cancer. This work identifies a novel protective role for CCL2/CCR2 in the tumor microenvironment, while opening new perspectives for modulation of human Vδ1 T cells in cancer immunotherapy.

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