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2011
Barbosa, PC, Fernandes M, Vilela SMF, Goncalves A, Oliveira MC, Fortunato E, Silva MM, Smith MJ, Rego R, Bermudez VD.  2011.  Di-Ureasil Hybrids Doped with LiBF4: Attractive Candidates as Electrolytes for "Smart Windows". Int. J. Electrochem. Sci. . 6:3355-3374.
Parthiban, S, Elangovan E, Ramamurthi K, Kanjilal D, Asokan K, Martins R, Fortunato E.  2011.  Effect of Li3+ heavy ion irradiation on the Mo doped In2O3 thin films prepared by spray pyrolysis technique. J. Phys. D-Appl. Phys.. 44(085404)
Martins, R, Ferreira I, Fortunato E.  2011.  Electronics with and on paper. Phys. Status Solidi-Rapid Res. Lett.. 5:332-335.
Nayak, PK, Pinto JV, Goncalves G, Martins R, Fortunato E.  2011.  Environmental, Optical, and Electrical Stability Study of Solution-Processed Zinc-Tin-Oxide Thin-Film Transistors. J. Disp. Technol. . 7:640-643.
Mouquinho, A, Saavedra M, Maiau A, Petrova K, Barros MT, Figueirinhas JL, Sotomayor J.  2011.  Films based on new methacrylate monomers: synthesis, characterisation and electro-optical properties. Mol. Cryst. Liq. Cryst.. 542(1):132-140.
Santos, S, Lanca V, Oliveira H, Silveira L, Marques V, Brito D, Madeira H, Bicho M, Fernandes AR.  2011.  Genetic diagnosis of hypertrophic cardiomyopathy using mass spectrometry DNA arrays and high resolution melting. Rev Port Cardiol. 30(1):7-18.11santosrpc.pdf
Chandra, S. V. Jagadeesh, Fortunato, Martins, Choi C-J.  2011.  Modulations in effective work function of platinum gate electrode in metal-oxide-semiconductor devices. Thin Solid Films. 520(14):4556-4558.
Lopes, R, Cabral P, Canas N, Breia P, Foreid JP, Calado E, Silva R, Leal A.  2011.  N170 asymmetry as an index of inferior occipital dysfunction in patients with symptomatic occipital lobe epilepsy. Clinical Neurophysiology. 122:9-15.
Baptista, PV, Doria G, Quaresma P, Cavadas M, Neves CS, Gomes I, Eaton P, Pereira E, Franco R.  2011.  Nanoparticles in molecular diagnostics. Nanoparticles in Translational Science and Medicine. 104(11)(Villaverde, Antoni, Ed.).:427-488.: Academic Press Co., Elsevier Publishing Services
McIntyre, NR, Franco R, Shelnutt JA, Ferreira GC.  2011.  Nickel(II) Chelatase Variants Directly Evolved from Murine Ferrochelatase: Porphyrin Distortion and Kinetic Mechanism . Biochemistry. 50(9):1535-1544.
Faísca, M.  2011.  O Plano Director Municipal e o Desenvolvimento Sustentável. Faculdade de Ciências e Tecnologia. (Amado, Miguel, Ed.)., Lisbon
Cavadas, M, González-Fernández Á, Franco R.  2011.  Pathogen mimetic stealth nanocarriers for drug delivery: a future possibility. Nanomedicine: Nanotechnology, Biology, and Medicine. 7(6):730-743.
Branquinho, R, Veigas B, Pinto JV, Martins R, Fortunato E, Baptista PV.  2011.  Real-time monitoring of PCR amplification of proto-oncogene c-MYC using a Ta2O5 electrolyte-insulator-semiconductor sensor. Biosens. Bioelectron.. 28:44-49..
Franco, R, Al-Karadaghi S, Ferreira G.  2011.  Resonance Raman Spectroscopic Examination of Ferrochelatase-Induced Porphyrin Distortion. Journal of Porphyrins and Phtalocyanines. 15(5-6):357-363.
Goncalves, G, Grasso V, Barquinha P, Pereira L, Elamurugu E, Brignone M, Martins R, Lambertini V, Fortunato E.  2011.  Role of Room Temperature Sputtered High Conductive and High Transparent Indium Zinc Oxide Film Contacts on the Performance of Orange, Green, and Blue Organic Light Emitting Diodes. Plasma Process. Polym.. 8:340-345.
de Almeida, SF, Grosso AR, Koch F, Fenouil R, Carvalho S, Andrade J, Levezinho H, Gut M, Eick D, Gut I, Andrau J-C, Ferrier P, Carmo-fonseca M.  2011.  Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.. Nature structural & molecular biology. 18:977–983., Number 9: Nature Publishing Group AbstractWebsite

Several lines of recent evidence support a role for chromatin in splicing regulation. Here, we show that splicing can also contribute to histone modification, which implies bidirectional communication between epigenetic mechanisms and RNA processing. Genome-wide analysis of histone methylation in human cell lines and mouse primary T cells reveals that intron-containing genes are preferentially marked with histone H3 Lys36 trimethylation (H3K36me3) relative to intronless genes. In intron-containing genes, H3K36me3 marking is proportional to transcriptional activity, whereas in intronless genes, H3K36me3 is always detected at much lower levels. Furthermore, splicing inhibition impairs recruitment of H3K36 methyltransferase HYPB (also known as Setd2) and reduces H3K36me3, whereas splicing activation has the opposite effect. Moreover, the increase of H3K36me3 correlates with the length of the first intron, consistent with the view that splicing enhances H3 methylation. We propose that splicing is mechanistically coupled to recruitment of HYPB/Setd2 to elongating RNA polymerase II.

Goncalves A., Costa C., Pereira S., Correia N., M.M. S, Barbosa P.C., L.C. R, Henriques I., R. M, Fortunato E..  2011.  Study of electrochromic devices with nanocomposites polymethacrylate hydroxyethylene resin based electrolyte. Polym. Adv. Technol.. 23:791–795.
Henriques, MX, Rodrigues T, Carido M, Ferreira L, Filipe SR.  2011.  Synthesis of capsular polysaccharide at the division septum of Streptococcus pneumoniae is dependent on a bacterial tyrosine kinase. Mol. Microbiol. 82:515-534.
Baptista, AC, Martins JI, Fortunato E, Martins R, Borges JP, Ferreira I.  2011.  Thin and flexible bio-batteries made of electrospun cellulose-based membranes. Biosens Bioelectron. 26(5):2742-5., Number 5 AbstractWebsite

The present work proposes the development of a bio-battery composed by an ultrathin monolithic structure of an electrospun cellulose acetate membrane, over which was deposited metallic thin film electrodes by thermal evaporation on both surfaces. The electrochemical characterization of the bio-batteries was performed under simulated body fluids like sweat and blood plasma [salt solution–0.9% (w/w) NaCl]. Reversible electrochemical reactions were detected through the cellulose acetate structure. Thus, a stable electrochemical behavior was achieved for a bio-battery with silver and aluminum thin films as electrodes. This device exhibits the ability to supply a power density higher than 3 muW cm(-2). Finally, a bio-battery prototype was tested on a sweated skin, demonstrating the potential of applicability of this bio-device as a micropower source.

Elangovan, E, Saji KJ, Parthiban S, Goncalves G, Barquinha P, Martins R, Fortunato E.  2011.  Thin-Film Transistors Based on Indium Molybdenum Oxide Semiconductor Layers Sputtered at Room Temperature. IEEE Electron Device Lett.. 32:1391-1393.
Sampaio, P, Ferreira P, Veiga L.  2011.  Transparent scalability with clustering for Java e-science applications. Proceedings of the 11th IFIP WG 6.1 international conference on Distributed applications and interoperable systems. :270–277., Berlin, Heidelberg: Springer-Verlag Abstract2011-dais-sampaio.pdf

The two-decade long history of events relating object-oriented programming, the development of persistence and transactional support, and the aggregation of multiple nodes in a single-system image cluster, appears to convey the following conclusion: programmers ideally would develop and deploy applications against a single shared global memory space (heap of objects) of mostly unbounded capacity, with implicit support for persistence and concurrency, transparently backed by a possibly large number of clustered physical machines.

In this paper, we propose a new approach to the design of OODB systems for Java applications: (O3)2 (pronounced ozone squared). It aims at providing to developers a single-system image of virtually unbounded object space/heap with support for object persistence, object querying, transactions and concurrency enforcement, backed by a cluster of multi-core machines with Java VMs that is kept transparent to the user/developer. It is based on an existing persistence framework (ozone-db) and the feasibility and performance of our approach has been validated resorting to the OO7 benchmark.

Atilano, ML, Yates J, Glittenberg M, Filipe* SR, Ligoxygakis* P.  2011.  Wall teichoic acids of Staphylococcus aureus limit recognition by the Drosophila Peptidoglycan Recognition Protein-SA to promote pathogenicity. PLoS Pathogens. 7:e1002421.
Fortunato, E, Martins R.  2011.  Where science fiction meets reality? With oxide semiconductors! Phys. Status Solidi-Rapid Res. Lett. . 5:336-339.
de Sa, MH, Ferreira JL, Melo MJ, Ramos AM.  2011.  An AFM contribution to the understanding of surface effects caused by ageing and cleaning on acrylic glass. The Shadows by Lourdes Castro, a case study. Surface and Interface Analysis. 43:1165-1170., Number 8 AbstractWebsite
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de Sa, MH, Eaton P, Ferreira JL, Melo MJ, Ramos AM.  2011.  Ageing of vinyl emulsion paints - an atomic force microscopy study. Surface and Interface Analysis. 43:1160-1164., Number 8 AbstractWebsite
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