Export 720 results:
Sort by: Author Title Type [ Year  (Desc)]
2009
Gomes, R, Diniz AM, Jesus A, Parola AJ, Pina F.  2009.  The synthesis and reaction network of 2-styryl-1-benzopyrylium salts: An unexploited class of potential colorants, 2009. Dyes and Pigments. 81:69-79. AbstractWebsite

The syntheses, thermodynamic and kinetic properties of a series of 2-styryl-1-benzopyrylium compounds are reported. This family of compounds was found to follow the same pH- and light-dependent network of chemical reactions previously described for flavylium (2-phenyl-1-benzopyrylim) compounds. However, 2-styryl-1-benzopyrylium compounds exhibit absorption spectra substantially red shifted when compared with flavylium analogues (up to 90 nm). In particular, a photochromic system switching from yellow to light blue based on derivatives of natural anthocyanins is for the first time documented. (C) 2008 Elsevier Ltd. All rights reserved.

Correia, DV, D'Orey F, Cardoso BA, Lança T, Grosso AR, DeBarros A, Martins LR, Barata JT, Silva-santos B.  2009.  Highly active microbial phosphoantigen induces rapid yet sustained MEK/Erk- and PI-3K/Akt-mediated signal transduction in anti-tumor human gammadelta T-cells. PloS one. 4:e5657., Number 5 AbstractWebsite

BACKGROUND:
The unique responsiveness of Vgamma9Vdelta2 T-cells, the major gammadelta subset of human peripheral blood, to non-peptidic prenyl pyrophosphate antigens constitutes the basis of current gammadelta T-cell-based cancer immunotherapy strategies. However, the molecular mechanisms responsible for phosphoantigen-mediated activation of human gammadelta T-cells remain unclear. In particular, previous reports have described a very slow kinetics of activation of T-cell receptor (TCR)-associated signal transduction pathways by isopentenyl pyrophosphate and bromohydrin pyrophosphate, seemingly incompatible with direct binding of these antigens to the Vgamma9Vdelta2 TCR. Here we have studied the most potent natural phosphoantigen yet identified, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate (HMB-PP), produced by Eubacteria and Protozoa, and examined its gammadelta T-cell activation and anti-tumor properties.
METHODOLOGY/PRINCIPAL FINDINGS:
We have performed a comparative study between HMB-PP and the anti-CD3epsilon monoclonal antibody OKT3, used as a reference inducer of bona fide TCR signaling, and followed multiple cellular and molecular gammadelta T-cell activation events. We show that HMB-PP activates MEK/Erk and PI-3K/Akt pathways as rapidly as OKT3, and induces an almost identical transcriptional profile in Vgamma9(+) T-cells. Moreover, MEK/Erk and PI-3K/Akt activities are indispensable for the cellular effects of HMB-PP, including gammadelta T-cell activation, proliferation and anti-tumor cytotoxicity, which are also abolished upon antibody blockade of the Vgamma9(+) TCR Surprisingly, HMB-PP treatment does not induce down-modulation of surface TCR levels, and thereby sustains gammadelta T-cell activation upon re-stimulation. This ultimately translates in potent human gammadelta T-cell anti-tumor function both in vitro and in vivo upon transplantation of human leukemia cells into lymphopenic mice,
CONCLUSIONS/SIGNIFICANCE:
The development of efficient cancer immunotherapy strategies critically depends on our capacity to maximize anti-tumor effector T-cell responses. By characterizing the intracellular mechanisms of HMB-PP-mediated activation of the highly cytotoxic Vgamma9(+) T-cell subset, our data strongly support the usage of this microbial antigen in novel cancer clinical trials.

Viciosa, MT, Correia NT, Sánchez SM, Ribelles GJL, Dionísio M.  2009.  Molecular Dynamics of Ethylene Glycol Dimethacrylate Glass Former: Influence of Different Crystallization Pathways. Journal of Phyiscal Chemsitry B. 113:14196-14208.Website
Compagna, D, Derpmann S, Mauz K.  2009.  The Operation of Autonomous Mobile Robot Assistants in the Environment of Care Facilities Adopting a User-Centered Development Design. Enterprise and Work Innovation Studies. 5:11-24. AbstractWebsite

The successful development of autonomous mobile robot assistants depends significantly on the well-balanced reconcilements of the technically possible and the socially desirable. Based on empirical research 2 substantiated conclusions can be established for the suitability of "scenario-based design" (Rosson/Carroll 2003) for the successful development of mobile robot assistants and automated guided vehicles to be applied for service functions in stationary care facilities for seniors.

Pokkuluri, PR, Londer YY, Wood SJ, Duke NEC, Morgado L, Salgueiro CA, Schiffer M.  2009.  Outer membrane cytochrome c, OmcF, from Geobacter sulfurreducens: High structural similarity to an algal cytochrome c6. Proteins: Structure, Function, and Bioinformatics. 74(1):266-270. AbstractWebsite

No abstract included.

Viciosa, MT, Correia N, Sánchez SM, Ribelles GJL, Carvalho AL, Romão MJ, Dionísio M.  2009.  Real-Time Monitoring of Molecular Dynamics of Ethylene Glycol Dimethacrylate Glass Former. journal of Physical Chemistry B. 113:14209-14217.Website
Meil, P, Stratigaki M, Linardos P, Tengblad P, Docherty P, Bannink D, Moniz A, Paulos M, Krings B, Nierling L.  2009.  Challenges for Europe under value chain restructuring: Contributions to policy debates. , Number http://ideas.repec.org/p/zbw/esrepo/65844.html Abstract

65844

Najmudin, S, Bonifacio C, Duarte AG, Pualeta SR, Moura I, Moura JJG, Romao MJ.  2009.  Crystallization and crystallographic analysis of the apo form of the orange protein (ORP) from Desulfovibrio gigas. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 65:730-732. AbstractWebsite
n/a
Najmudin, S, Bonifacio C, Duarte AG, Pauleta SR, Moura I, Moura JJG, Romao MJ.  2009.  Crystallization and crystallographic analysis of the apo form of the orange protein (ORP) from Desulfovibrio gigas. (vol F65, pg 730, 2009). Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 65:856-856. AbstractWebsite
n/a
Rodriguez, L, Delgado-Pinar E, Sornosa-Ten A, Alarcon J, Garcia-Espana E, Cano M, Lima JC, Pina F.  2009.  Effect of Water/Carboxymethylcellulose Gel on the Excimer Formation of Polyamine Ligands Functionalized with Naphthalene. Journal of Physical Chemistry B. 113:15455-15459., Number 47 Abstract
n/a
Rivas, MG, Carepo MSP, Mota CS, Korbas M, Durand M-C, Lopes AT, Brondino CD, Pereira AS, George GN, Dolla A, Moura JJG, Moura I.  2009.  Molybdenum Induces the Expression of a Protein Containing a New Heterometallic Mo-Fe Cluster in Desulfovibrio alaskensis. Biochemistry. {48}:{873-882}., Number {5}, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA: AMER CHEMICAL SOC Abstract

The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmemtal conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 mu M molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed.

Viciosa, MT, Correia NT, Salmeron Sanchez M, Carvalho AL, Romao MJ, Gomez Ribelles JL, Dionisio M.  2009.  Real-Time Monitoring of Molecular Dynamics of Ethylene Glycol Dimethacrylate Glass Former. Journal of Physical Chemistry B. 113:14209-14217., Number 43 AbstractWebsite
n/a
Rodriguez, L, Ferrer M, Rossell O, Duarte FJS, Santos GA, Lima JC.  2009.  Solvent effects on the absorption and emission of [Re(R(2)bpy)(CO)(3)X] complexes and their sensitivity to CO2 in solution. Journal of Photochemistry and Photobiology a-Chemistry. 204:174-182., Number 2-3 Abstract
n/a
Cano, M, Rodriguez L, Lima JC, Pina F, Dalla Cort A, Pasquini C, Schiaffino L.  2009.  Specific Supramolecular Interactions between Zn2+-Salophen Complexes and Biologically Relevant Anions. Inorganic Chemistry. 48:6229-6235., Number 13 Abstract
n/a
Cano, M, Rodriguez L, Lima JC, Pina F, Dalla Cort A, Pasquini C, Schiaffino L.  2009.  Specific Supramolecular Interactions between Zn2+-Salophen Complexes and Biologically Relevant Anions. Inorganic Chemistry. 48:6229-6235., Number 13 AbstractWebsite
n/a
Frade, RFM, Rosatella AA, Marques CS, Branco LC, Kulkarni PS, Mateus NMM, Afonso CAM, Duarte CMM.  2009.  Toxicological evaluation on human colon carcinoma cell line (CaCo-2) of ionic liquids based on imidazolium, guanidinium, ammonium, phosphonium, pyridinium and pyrrolidinium cations. Green Chemistry. 11:1660-1665., Number 10 AbstractWebsite
n/a
Meil, P, Stratigaki M, Linardos P, Tengblad P, Docherty P, Bannink D, Moniz A, Paulos M, Krings B, Nierling L.  2009.  {Challenges for Europe under value chain restructuring: Contributions to policy debates}. , Number http://ideas.repec.org/p/zbw/esrepo/65844.html Abstract

65844

2008
Costa, PM, Repolho T, Caeiro S, Diniz ME, Moura I, Costa MH.  2008.  Modelling metallothionein induction in the liver of Sparus aurata exposed to metal-contaminated sediments, Sep. Ecotoxicology and Environmental Safety. 71:117-124., Number 1 AbstractWebsite

Metallothionein (MT) in the liver of gilthead seabreams (Sparus aurata L., 1758) exposed to Sado estuary (Portugal) sediments was quantified to assess the MT induction potential as a biomarker of sediment-based contamination by copper (Cu), cadmium (U), lead (Pb) and arsenic (As). Sediments were collected from two control sites and four sites with different levels of contamination. Sediment Cu, Cd, Pb, As, total organic matter (TOM) and fine fraction (FF) levels were determined. Generalized linear models (GLM) allowed integration of sediment parameters with liver Cu, Cd, Pb, As and MT concentrations. Although sediment metal levels were lower than expected, we relate NIT with liver Cd and also with interactions between liver and sediment Cu and between liver Cu and TOM. We suggest integrating biomarkers and environmental parameters using statistical models such as GLM as a more sensitive and reliable technique for sediment risk assessment than traditional isolated biomarker approaches. (C) 2007 Elsevier Inc. All rights reserved.

Dell'Acqua, S, Pauleta SR, Monzani E, Pereira AS, Casella L, Moura JJ, Moura I.  2008.  Electron transfer complex between nitrous oxide reductase and cytochrome c552 from Pseudomonas nautica: kinetic, nuclear magnetic resonance, and docking studies, Oct 14. Biochemistry. 47:10852-62., Number 41 AbstractWebsite

The multicopper enzyme nitrous oxide reductase (N 2OR) catalyzes the final step of denitrification, the two-electron reduction of N 2O to N 2. This enzyme is a functional homodimer containing two different multicopper sites: CuA and CuZ. CuA is a binuclear copper site that transfers electrons to the tetranuclear copper sulfide CuZ, the catalytic site. In this study, Pseudomonas nautica cytochrome c 552 was identified as the physiological electron donor. The kinetic data show differences when physiological and artificial electron donors are compared [cytochrome vs methylviologen (MV)]. In the presence of cytochrome c 552, the reaction rate is dependent on the ET reaction and independent of the N 2O concentration. With MV, electron donation is faster than substrate reduction. From the study of cytochrome c 552 concentration dependence, we estimate the following kinetic parameters: K m c 552 = 50.2 +/- 9.0 muM and V max c 552 = 1.8 +/- 0.6 units/mg. The N 2O concentration dependence indicates a K mN 2 O of 14.0 +/- 2.9 muM using MV as the electron donor. The pH effect on the kinetic parameters is different when MV or cytochrome c 552 is used as the electron donor (p K a = 6.6 or 8.3, respectively). The kinetic study also revealed the hydrophobic nature of the interaction, and direct electron transfer studies showed that CuA is the center that receives electrons from the physiological electron donor. The formation of the electron transfer complex was observed by (1)H NMR protein-protein titrations and was modeled with a molecular docking program (BiGGER). The proposed docked complexes corroborated the ET studies giving a large number of solutions in which cytochrome c 552 is placed near a hydrophobic patch located around the CuA center.

Tavares, {JRRF}, Baptista {PMRV}, Doria {GMRPDF}, Flores {AODL}.  2008.  Colorimetric method and kit for the detection of specific nucleic acid sequences using metal nanoparticles functionalized with modified oligonucleotides, nov. Abstract

The present invention relates to a colorimetric method for the detection of specific nucleic acids sequences, including mutations or single nucleotide polymorphisms within nucleic acid sequences, through the aggregation of nanoparticles functionalized with modified oligonucleotides, induced by an increase of the medium's ionic strength. Another aspect of the present invention relates with the development of a kit based on the method of the present invention, allowing for a quick and easy detection of specific nucleic acids sequences, including mutations or single nucleotide polymorphisms within nucleic acid sequences.

Tavares, {JRRF}, Baptista {PMRV}, Dória {GMRPDF}, de Flores {AOL}.  2008.  Método colorimétrico e estojo de detec{\c c}ão de sequências específicas de ácidos nucleicos através de nanopartículas metálicas funcionalizadas com oligonucleótidos modificados, nov. Abstract

O presente invento relaciona-se com um método colorimétrico de detec{\c c}ão de sequências específicas de ácidos nucleicos, incluindo muta{\c c}ões ou polimorfismos de nucleótido único em sequências de ácidos nucleicos, através da agrega{\c c}ão de nanopartículas funcionalizadas com oligonucleótidos modificados induzida por um aumento da for{\c c}a iónica do meio. Outro aspecto do presente invento relaciona-se com o desenvolvimento de um estojo que ao aplicar a metodologia objecto da presente inven{\c c}ão, permite a rápida e fácil detec{\c c}ão de sequências específicas de ácidos nucleicos, incluindo muta{\c c}ões ou polimorfismos de nucleótido único em sequências de ácidos nucleicos.

Gavel, OY, Bursakov SA, Di Rocco G, Trincao J, Pickering IJ, George GN, Calvete JJ, Shnyrov VL, Brondino CD, Pereira AS, Lampreia J, Tavares P, Moura JJ, Moura I.  2008.  A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774, May-Jun. J Inorg Biochem. 102:1380-95., Number 5-6 AbstractWebsite

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence 129Cys-X5-His-X15-Cys-X2-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain.

de Martins, {RFP}, Baptista P, Silva {LB}, Raniero L, c}alo Dória G{\c, Franco R, Fortunato E.  2008.  Identification of unamplified genomic DNA sequences using gold nanoparticle probes and a novel thin film photodetector, may. Journal of Non-Crystalline Solids. 354:2580–2584., Number 19-25: Elsevier Abstract

This paper describes a novel colorimetric method for detection of nucleic acid targets in a homogeneous format with improved sensitivity by means of a system based on the combination of a tunable monochromatic light source and an amorphous/nanocrystalline silicon photodetector that detects color and light intensity changes undergone by samples/assays containing tailored gold nanoparticles probes. This new low cost, portable, fast and simple optoelectronic platform, with the possibility to be re-used, permits detection of at least 400 fentomole of specific DNA sequences without target or signal amplification and was applied to the rapid detection of human pathogens in large variety of clinical samples such as Mycobacterium tuberculosis.

Silva, {LB }, Baptista P, Raniero L, c}alo Doria G{\c, de Martins {RFP}, Fortunato {EMC}.  2008.  Characterization of optoelectronic platform using an amorphous/nanocrystalline silicon biosensor for the specific identification of nucleic acid sequences based on gold nanoparticle probes, jun. Sensors and Actuators B: Chemical. 132:508–511., Number 2: Elsevier Abstract
n/a
Baptista, P, Pereira E, Eaton P, c}alo Doria G{\c, Miranda A, Gomes I, Quaresma P, Franco R.  2008.  Gold nanoparticles for the development of clinical diagnosis methods, jun. Analytical and Bioanalytical Chemistry. 391:943–950., Number 3: Springer Abstract

The impact of advances in nanotechnology is particularly relevant in biodiagnostics, where nanoparticle-based assays have been developed for specific detection of bioanalytes of clinical interest. Gold nanoparticles show easily tuned physical properties, including unique optical properties, robustness, and high surface areas, making them ideal candidates for developing biomarker platforms. Modulation of these physicochemical properties can be easily achieved by adequate synthetic strategies and give gold nanoparticles advantages over conventional detection methods currently used in clinical diagnostics. The surface of gold nanoparticles can be tailored by ligand functionalization to selectively bind biomarkers. Thiol-linking of DNA and chemical functionalization of gold nanoparticles for specific protein/antibody binding are the most common approaches. Simple and inexpensive methods based on these bio-nanoprobes were initially applied for detection of specific DNA sequences and are presently being expanded to clinical diagnosis.