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2014
Quaresma P, Osório I, Doria G, Carvalho PA, Pereira A, Langer J, Araújo JP, Pastoriza-Santos I, Liz-Marzán LM, Franco R, Baptista P, Pereira E.  2014.  STAR-SHAPED MAGNETITE@GOLD NANOPARTICLES FOR PROTEIN MAGNETIC SEPARATION AND SERS DETECTION. RSC Adv. 4(8):3659-3667.
Craveiro, R, Martins M, Santos GB, N. T. Correia, Dionísio M, Barreiros S, Duarte ARC, Reis RL, Paiva A.  2014.  Starch-based polymer – IL composites formed by compression moulding and supercritical fluid foaming for self-supported conductive materials. RSC Advances. 4:17161-17170.Website
Duarte, AG, Cordas CM, Moura JJG, Moura I.  2014.  Steady state kinetics with nitric oxide reductase (nor): new considerations onsubstrate inhibiion profile and catalytic mechanism. Biochim Biophys Acta. 1837:375-384.
Dall`Agnol, L, Moura JJG.  2014.  Sulphate reducing bacteria and microbially induced corroision. Green BOOK - Understanding Biocorrosion: Fundamentals and Applications. (Liengen, Basseguy, Feron, Beech, Eds.).:ISBN:9781782421207.: Woodhead Publishing
Fernandes, CSM, Pina AS, Dias AMGC, Branco RJF, Roque ACA.  2014.  A theoretical and experimental approach toward the development of affinity adsorbents for GFP and GFP-fusion proteins purification. Journal of Biotechnology. 186:13-20. AbstractWebsite

The green fluorescent protein (GFP) is widely employed to report on a variety of molecular phenomena, but its selective recovery is hampered by the lack of a low-cost and robust purification alternative. This work reports an integrated approach combining rational design and experimental validation toward the optimization of a small fully-synthetic ligand for GFP purification. A total of 56 affinity ligands based on a first-generation lead structure were rationally designed through molecular modeling protocols. The library of ligands was further synthesized by solid-phase combinatorial methods based on the Ugi reaction and screened against Escherichia coli extracts containing GFP. Ligands A4C2, A5C5 and A5C6 emerged as the new lead structures based on the high estimated theoretical affinity constants and the high GFP binding percentages and enrichment factors. The elution of GFP from these adsorbents was further characterized, where the best compromise between mild elution conditions, yield and purity was found for ligands A5C5 and A5C6. These were tested for purifying a model GFP-fusion protein, where ligand A5C5 yielded higher protein recovery and purity. The molecular interactions between the lead ligands and GFP were further assessed by molecular dynamics simulations, showing a wide range of potential hydrophobic and hydrogen-bond interactions.

Loureiro, J, Neves N, Barros R, Mateus T, Santos R, Filonovich S, Reparaz S, Torres CMS, Wyczisk F, Divay L, Martins R, Ferreira I.  2014.  Transparent aluminium zinc oxide thin films with enhanced thermoelectric properties. J. Mater. Chem. A. 2(18):6649-6655. AbstractWebsite

Improved thermoelectric properties of Aluminum Zinc Oxide (AZO) thin films deposited by radio frequency (RF) and pulsed Direct Current (DC) magnetron sputtering at room temperature are reported. In both techniques films were deposited using sintered and non-sintered targets produced from nano-powders. It is confirmed that both the Al doping concentration and film thickness control the thermoelectric, optical and structural properties of these films. Seebeck coefficients up to −134 μV K−1 and electrical conductivities up to 4 × 104 (Ω m)−1 lead to power factors up to 4 × 10−4 W mK−2, which is above the state-of-the-art for similar materials, almost by a factor of three. The thermoelectric I–V response of an optimized AZO element with a planar geometry was measured and a maximum power output of 2.3 nW, for a temperature gradient of 20 K near room temperature, was obtained. Moreover, the low thermal conductivity (<1.19 W mK−1) yields a ZT value above 0.1. This is an important result as it is at least three times higher than the ZT found in the literature for AZO, at room temperature, opening new doors for applications of this inexpensive, abundant and environmental friendly material, in a new era of thermoelectric devices.

Sanguino P, Monteiro T, Bhattacharyya SR, Dias CJ, Igreja R, Franco R.  2014.  ZnO NANORODS AS IMMOBILIZATION LAYERS FOR INTERDIGITATED CAPACITIVE IMMUNOSENSORS. Sensors and Actuators B:Chemical . 204:211-217.
Bianchi, A, Delgado-Pinar E, Garcia-Espana E, Giorgi C, Pina F.  2014.  Highlights of metal ion-based photochemical switches. Coordination Chemistry Reviews. 260:156-215. AbstractWebsite
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Bianchi, A, Delgado-Pinar E, Garcia-Espana E, Giorgi C, Pina F.  2014.  Highlights of metal ion-based photochemical switches. Coordination Chemistry Reviews. 260:156-215. AbstractWebsite
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Marrucho, IM, Branco LC, Rebelo LPN.  2014.  Ionic Liquids in Pharmaceutical Applications. Annual Review of Chemical and Biomolecular Engineering, Vol 5. 5(Prausnitz, J. M., Doherty, M. F., Segalman, R. A., Eds.).:527-546. Abstract
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Florindo, C, Costa A, Matos C, Nunes SL, Matias AN, Duarte CMM, Rebelo LPN, Branco LC, Marrucho IM.  2014.  Novel organic salts based on fluoroquinolone drugs: Synthesis, bioavailability and toxicological profiles. International Journal of Pharmaceutics. 469:179-189., Number 1 AbstractWebsite
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Conde, J, Dias {JT }, Grazu V, Moros M, Baptista P, {de la Fuente} {JM }.  2014.  Revisiting 30 years of biofunctionalization and surface chemistry of inorganic nanoparticles for nanomedicine. Frontiers in Chemistry. 2: Frontiers Media Abstract

In the last 30 years we have assisted to a massive advance of nanomaterials in material science. Nanomaterials and structures, in addition to their small size, have properties that differ from those of larger bulk materials, making them ideal for a host of novel applications. The spread of nanotechnology in the last years has been due to the improvement of synthesis and characterization methods on the nanoscale, a field rich in new physical phenomena and synthetic opportunities. In fact, the development of functional nanoparticles has progressed exponentially over the past two decades. This work aims to extensively review 30 years of different strategies of surface modification and functionalization of noble metal (gold) nanoparticles, magnetic nanocrystals and semiconductor nanoparticles, such as quantum dots. The aim of this review is not only to provide in-depth insights into the different biofunctionalization and characterization methods, but also to give an overview of possibilities and limitations of the available nanoparticles.

Quaresma, P, Osório I, c}alo Dória G{\c, Carvalho {PA }, Pereira A, Langer J, Araújo {JP}, Pastoriza-Santos I, Liz-Marzán {LM }, Franco R, Baptista P, Pereira E.  2014.  Star-shaped magnetite@gold nanoparticles for protein magnetic separation and SERS detection. RSC Advances. 4:3659–3667., Number 8: RSC - Royal Society of Chemistry Abstract

A novel synthetic methodology for star shaped gold-coated magnetic nanoparticles is reported. The coating is performed in two steps: formation of gold nuclei at the surface of magnetite nanoparticles followed by growth of the gold nuclei into a complete star shaped shell. The star-shaped gold-coated magnetic nanoparticles thus obtained preserve the magnetic properties of the precursor magnetite nanoparticles, e. g. they can be easily separated with a magnet. In addition, the gold coating provides interesting optical properties while simultaneously allowing for biofunctionalization that may be advantageous for biological applications, such as (bio)detection via surface-enhanced Raman spectroscopy (SERS). As a proof-of-concept, a capping agent terminated with a nickel(II)-nitrilotriacetate group showing high affinity for histidine was used to modify the surface of the nanoparticles. The resulting star-shaped nanoparticles were used to selectively capture histidine-tagged maltose-binding protein from a crude cell extract. Finally, the performance of star shaped gold-coated magnetic nanoparticles as SERS platforms was demonstrated through the detection of Raman active dye (Astra Blue).

Pimentel, A, Nunes D, Duarte P, Rodrigues J, Costa FM, Monteiro T, Martins R, Fortunato E.  2014.  {Synthesis of Long ZnO Nanorods under Microwave Irradiation or Conventional Heating}. The Journal of Physical Chemistry C. 118:14629–14639., Number 26 AbstractWebsite

The present work reports the synthesis of zinc oxide (ZnO) nanostructures produced either under microwave irradiation using low cost domestic microwave equipment or by conventional heating, both under hydrothermal conditions. X-ray diffraction, scanning electron microscopy, Fourier transform infrared spectroscopy, room/low temperature photoluminescence, and Raman spectroscopy have been used to investigate the structure, morphology, and optical properties of the produced ZnO nanorods. Identical structures with aspect ratio up to 13 have been achieved for both synthesis routes displaying similar final properties. The hexagonal wurtzite structure has been identified, and a red-orange emission has been detected in the presence of UV irradiation for all the conditions studied. Thermal stability of the as-prepared nanostructures has been evaluated through thermogravimetric measurements revealing an increase of superficial defects. The as-prepared ZnO nanorods were tested as UV sensors on paper substrate, which led to fast response (30 s) and rapid recovery (100 s) times, as well as sensitivity up to 10 indicating that these materials may have a high potential in low cost, disposable UV photodetector applications.

Pereira, L, Gaspar D, Guerin D, a Delattre, Fortunato E, Martins R.  2014.  {The influence of fibril composition and dimension on the performance of paper gated oxide transistors}. Nanotechnology. 25:94007., Number 9 AbstractWebsite

Paper electronics is a topic of great interest due the possibility of having low-cost, disposable and recyclable electronic devices. The final goal is to make paper itself an active part of such devices. In this work we present new approaches in the selection of tailored paper, aiming to use it simultaneously as substrate and dielectric in oxide based paper field effect transistors (FETs). From the work performed, it was observed that the gate leakage current in paper FETs can be reduced using a dense microfiber/nanofiber cellulose paper as the dielectric. Also, the stability of these devices against changes in relative humidity is improved. On other hand, if the pH of the microfiber/nanofiber cellulose pulp is modified by the addition of HCl, the saturation mobility of the devices increases up to 16 cm 2 V −1 s −1 , with an I ON / I OFF ratio close to 10 5 .

2013
Leydet, Y, Batat P, Jonusauskas G, Denisov S, Lima JC, Parola AJ, McClenaghan ND, Pina F.  2013.  Impact of Water on the Cis-Trans Photoisomerization of Hydroxychalcones, 2013. Journal of Physical Chemistry A. 117:4167-4173. AbstractWebsite

The photochromism of a 2-hydroxychalcone has been studied in CH3CN and H2O/CH3OH (1/1, v/v), as well as in analogous deuterated solvents using steady-state (UV-vis absorption, H-1 and C-13 NMR) and time-resolved (ultrafast transient absorption and nanosecond flow flash photolysis) spectroscopies. Whereas the irradiation of trans-chalcone (Ct) under neutral pH conditions leads to the formation of the same final chromene derivative (B) in both media, two distinct photochemical mechanisms are proposed in agreement with thermodynamic and kinetic properties of the chemical reaction network at the ground state. Following light excitation, the first steps are identical in acetonitrile and aqueous solution: the Franck-Condon excited state rapidly populates the trans-chalcone singlet excited state (1)Ct* (LE), which evolves into a twisted state P-1*. This excited state is directly responsible for the photochemistry in acetonitrile in the nanosecond time scale (16 ns) leading to the formation of cis-chalcone (Cc) through a simple isomerization process. The resulting cis-chalcone evolves into the chromene B through a tautomerization process in the ground state (tau= 10 ms). Unlike in acetonitrile, in H2O/CH3OH (1/1, v/v), the P* state becomes unstable and evolves into a new state attributed to the tautomer (1)Q*. This state directly evolves into B in one photochemical step through a consecutive ultrafast tautomerization process followed by electrocyclization. This last case represents a new hypothesis in the photochromism of 2-hydroxychalcone derivatives.

Petrov, V, Diniz AM, Cunha-Silva L, Parola AJ, Pina F.  2013.  Kinetic and thermodynamic study of 2 '-hydroxy-8-methoxyflavylium. Reaction network interconverting flavylium cation and flavanone, 2013. Rsc Advances. 3:10786-10794. AbstractWebsite

2'-Hydroxyflavylium and 2'-hydroxyflavanone derivatives can be interconverted by a precise sequence of pH jumps, through the respective intermediate (mono) ionized trans-chalcones. In acidic and neutral media, the well known network of chemical reactions involving flavylium cation, quinoidal base, hemiketal, and cis and trans chalcones is established. In the pH range 8 < pH < 10, the chalcone (Ct) deprotonates and evolves to the formation of a flavanone (F). At higher pH values, the di-ionized trans-chalcone is the stable species, formed from the flavylium cation. Acidification of the di-ionized trans-chalcone gives the flavylium cation or the flavanone, via the mono-ionized trans-chalcone, respectively at pH < 1 and pH approximate to 9. In contrast with the chalcones, the flavanone once formed is stable even in acidic media. However, under strongly basic conditions, it leads back to the di-ionized trans-chalcone, the most stable species at more basic pH values, and the reactions leading to Ct(-), F, Ct(2-), Ct(-), constitute a one direction cycle for interconversion of these species.

Calogero, G, Sinopoli A, Citro I, Di Marco G, Petrov V, Diniz AM, Parola AJ, Pina F.  2013.  Synthetic analogues of anthocyanins as sensitizers for dye-sensitized solar cells, 2013. Photochemical & Photobiological Sciences. 12:883-894. AbstractWebsite

Seven flavylium salt dyes were employed for the first time as sensitizers for dye-sensitized solar cells (DSSCs). The theoretical and experimental wavelengths of the maximum absorbances, the HOMO and LUMO energy levels, the coefficients, the oscillator strengths and the dipole moments are calculated for these synthetic dyes. The introduction of a donor group in the flavylium molecular structure was investigated. Photophysical and photoelectrochemical measurements showed that some of these synthetic analogues of anthocyanins are very promising for DSSC applications. The best performance was obtained by a DSSC based on the novel compound 7-(N,N-diethylamino)-3',4'-dihydroxyflavylium which produced a 2.15% solar energy-to-electricity conversion efficiency, under AM 1.5 irradiation (100 mW cm(-2)) with a short-circuit current density (J(sc)) of 12.0 mA cm(-2), a fill factor of 0.5 and an open-circuit voltage (V-oc) of 0.355 V; its incident photocurrent efficiency of 51% at the peak of the visible absorption band of the dye is remarkable. Our results demonstrated that the substitution of a hydroxylic group with a diethylamine unit in position 7 of ring A of the flavylium backbone expanded the pi-conjugation in the dye and thus resulted in a higher absorption in the visible region and is advantageous for effective electron injection from the dye into the conduction band of TiO2.

Seixas, J, Fortes P, Dias L.  2013.   Renewable power cost supply curves (AIC) TIMES_PT: Portugal, 17 June. IRENA-ETSAP joint Session. , Paris, France
Seixas, J, Fortes P, Dias L.  2013.  Renewable Power Cost Supply Curves - TIMES_PT: Portugal, 17 June. IRENA-ETSAP Joint Session. , Paris, France: International Renewable Energy Agency – The Technology Systems Analysis Program
dos Santos, R, Rocha Â, Matias A, Duarte C, Sá-Nogueira I, Lourenço N, Borges JP.  2013.  Development of antimicrobial Ion Jelly fibers. RSC Advances. 3(46):24400-24405. Abstract

We report a method to obtain electrospun fibers based on ionic liquids and gelatin, exhibiting antimicrobial properties.

Dias, RJ, Vale TM, Lourenço JM.  2013.  Efficient Support for In-Place Metadata in Java Software Transactional Memory. Concurrency and Computation: Practice & Experience. 25(17):2394–2411.: Wiley Abstract2013-ccpe.pdf

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Dantas, JM, Tomaz DM, Morgado L, Salgueiro CA.  2013.  Functional characterization of PccH, a key cytochrome for electron transfer from electrodes to the bacterium Geobacter sulfurreducens. FEBS Letters. 587(16):2662-2668. AbstractWebsite

The cytochrome PccH from Geobacter sulfurreducens (Gs) plays a crucial role in current-consuming fumarate-reducing biofilms. Deletion of pccH gene inhibited completely electron transfer from electrodes toward Gs cells. The pccH gene was cloned and the protein heterologously expressed in Escherichia coli. Complementary biophysical techniques including CD, UV-visible and NMR spectroscopy were used to characterize PccH. This cytochrome contains one low-spin c-type heme with His-Met axial coordination and unusual low-reduction potential. This reduction potential is pH-dependent, within the Gs physiological pH range, and is discussed within the context of the electron transfer mechanisms from electrodes to Gs cells.

Gromicho, M, Magalhaes M, Torres F, Dinis J, Fernandes AR, Rendeiro P, Tavares P, Laires A, Rueff J, Rodrigues AS.  2013.  Instability of mRNA expression signatures of drug transporters in chronic myeloid leukemia patients resistant to imatinib. Oncol Rep. 29(2):741-50.13gromichoor.pdf
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