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2005
Ortigueira, M, Tenreiro-Machado JA, da Costa JSá.  2005.  Which Differintegration?, July IEE Proceedings Vision, Image & Signal Processing. 152:846–850., Number 6: IET AbstractWebsite
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Abreu, AR, Costa I, Rosa C, Ferreira LM, Lourenco A, Santos PP.  2005.  New enantioselective method for hydration of alkenes using cyclodextrins as phase transfer catalyst, DEC 12. TETRAHEDRON. 61:11986-11990., Number 50 Abstract
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More, C, Asso M, Roger G, Guigliarelli B, Caldeira J, Moura J, Bertrand P.  2005.  Study of the spin-spin interactions between the metal centers of Desulfovibrio gigas aldehyde oxidoreductase: identification of the reducible sites of the [2Fe-2S]1+,2+ clusters, Aug 30. Biochemistry. 44:11628-35., Number 34 AbstractWebsite

The aldehyde oxidoreductase from Desulfovibrio gigas belongs to the family of molybdenum hydroxylases. Besides a molybdenum cofactor which constitutes their active site, these enzymes contain two [2Fe-2S](2+,1+) clusters which are believed to transfer the electrons provided by the substrate to an acceptor which is either a FAD group or an electron-transferring protein. When the three metal centers of D. gigas AOR are simultaneously paramagnetic, splittings due to intercenter spin-spin interactions are visible when the EPR spectra are recorded at low temperatures. By studying quantitatively these interactions with a model based on the X-ray crystal structure, which takes into consideration the interactions between the magnetic moments carried by all the metal sites of the system, it is possible to determine the location of the reducible sites of the [2Fe-2S] clusters. When combined with the electron-transfer pathways proposed on the basis of the X-ray crystal structure, the results provide a detailed description of the electron-transfer system of D. gigas AOR.

Pina, J, de Melo JS, Pina F, Lodeiro C, Lima JC, Parola AJ, Soriano C, Clares MP, Albelda MT, Aucejo R, Garcia-Espana E.  2005.  Spectroscopy and coordination chemistry bisnaphthalene-bisphenanthroline ligand of a new displaying a sensing ability for metal cations, 2005. Inorganic Chemistry. 44:7449-7458. AbstractWebsite

A new fluorescent macrocyclic structure (0) bearing two naphthalene units at both ends of a cyclic polyaminic chain containing two phenanthroline units was investigated with potentiometric and fluorescence (steady-state and time-resolved) techniques. The fluorescence emission spectra show the simultaneous presence of three bands: a short wavelength emission band (naphthalene monomer), a middle emission band (phenanthroline emission), and a long-wavelength band. All three bands were found to be dependent on the protonation state of the macrocyclic unit (including the polyaminic and phenanthroline structures). The existence of the long-wavelength emission band is discussed and is shown to imply that a bending movement involving the two phenanthroline units leads to excimer formation. This is determined by comparison with the excimer emission formed by intermolecular association of 1,10-phenanthroline. With ligand L1, excimer formation occurs only at pH values above 4. At very acidic pH values, the protonation of the polyamine bridges is extensive leading to a rigidity of the system that precludes the bending movement. The interaction with metal cations Zn(II) and Cu(II) was also investigated. Excimer formation is, in these situations, increased with Zn(II) and decreased with Cu(II). The long-emission band is shown to present a different wavelength maximum, depending on the metal, which can be considered as a characteristic to validate the use of ligand L1 as a sensor for a given metal.

BRITO PALMA, L, Coito FV, NEVES DA SILVA R.  2005.   Diagnosis of parametric faults based on identification and statistical methods. Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC’05. 44th IEEE Conference on. :3838–3843.: IEEE. Abstract

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Coito, F, Lemos J.  2005.  Adaptive Optimization with Constraints: Convergence and oscillatory behaviour. Pattern Recognition and Image Analysis. (Springer Berlin/Heidelberg):335–366. Abstract

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Salgueiro, CA, Morgado L, Fonseca B, Lamosa P, Catarino T, Turner DL, Louro RO.  2005.  Binding of ligands originates small perturbations on the microscopic thermodynamic properties of a multicentre redox protein. FEBS Journal. 272(9):2251-2260. AbstractWebsite

NMR and visible spectroscopy coupled to redox measurements were used to determine the equilibrium thermodynamic properties of the four haems in cytochrome c3 under conditions in which the protein was bound to ligands, the small anion phosphate and the protein rubredoxin with the iron in the active site replaced by zinc. Comparison of these results with data for the isolated cytochrome shows that binding of ligands causes only small changes in the reduction potentials of the haems and their pairwise interactions, and also that the redox-sensitive acid–base centre responsible for the redox–Bohr effect is essentially unaffected. Although neither of the ligands tested is a physiological partner of cytochrome c3, the small changes observed for the thermodynamic properties of cytochrome c3 bound to these ligands vs. the unbound state, indicate that the thermodynamic properties measured for the isolated protein are relevant for a physiological interpretation of the role of this cytochrome in the bioenergetic metabolism of Desulfovibrio.

Palma, LB, Coito FV, da Silva RN.  2005.  Combined approach to fault diagnosis based on principal components and influence matrix. Intelligent Signal Processing, 2005 IEEE International Workshop on. :171–176.: IEEE. Abstract

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Pessanha, M, Rothery EL, Louro RO, Turner DL, Miles CS, Reid GA, Chapman SK, Xavier AV, Salgueiro CA.  2005.  Elucidation of the Functional Redox Behavior of Fumarate Reductase from Shewanella frigidimarina by NMR. Annals Magnetic Resonance. 4(1/2):24-28. AbstractWebsite

NMR spectroscopy has been applied with great success to study electron transfer proteins
with multiple redox centers. This study aimed to elucidate the redox behavior the enzyme fumarate
reductase from Shewanella frigidimarina and particularly to reveal the electron transfer mechanism
from the N-terminal domain to the active center. We developed a new strategy encompassing the
acquisition of 1H-EXSY bidimensional spectra for observation of chemical exchange connectivities in
partially oxidized samples of fcc3, estimation of the paramagnetic chemical shifts expected for the
heme substituents and their comparison with NMR spectra obtained in the fully oxidized protein. This
study allowed obtaining the order of oxidation of the different groups (II-I-III, IV) and gave insights of
the functional mechanisms that allow fcc3 to efficiently transfer electrons from the N-terminal domain
to the active center.

Palma, LB, Coito FV, da Silva RN.  2005.  Process fault diagnosis approach based on neural observers. Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. 1:4–pp.: IEEE. Abstract

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Coito, F, Almeida P, Palma LB.  2005.  SMCRVI-a Labview/Matlab based tool for remote monitoring and control. Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. 2:6–pp.: IEEE. Abstract

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Coito, F, Lemos JM, Alves SS.  2005.  Stochastic Extremum Seeking in the Presence of Constraints. World Congress. 16:266–266., Number 1. Abstract

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Coito, F, Lemos J.  2005.  Adaptive Optimization with Constraints: Convergence and oscillatory behaviour. Pattern Recognition and Image Analysis. :335–366.: Springer Berlin/Heidelberg Abstract

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Palma, LB, Coito FV, da Silva RN.  2005.  Combined approach to fault diagnosis based on principal components and influence matrix. Intelligent Signal Processing, 2005 IEEE International Workshop on. :171–176.: IEEE Abstract

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Figueirinhas, JL, Cruz C, Filip D, Feio G, Ribeiro AC, Frere Y, Meyer T, Mehl GH.  2005.  Deuterium NMR investigation of the biaxial nematic phase in an organosiloxane tetrapode. Phys Rev Lett. 94:107802., Number 10 AbstractWebsite

Deuterium NMR is used to examine the molecular order exhibited by an organosiloxane tetrapode giving the first experimental evidence, using a bulk sample, for the existence of a biaxial nematic phase in this type of compounds. The temperature dependence of the averaged quadrupolar coupling constant and asymmetry parameter was determined in the compound's nematic phase. Two distinct regimes could be identified, one with a vanishing asymmetry parameter corresponding to a uniaxial nematic phase and another with a significant temperature dependent asymmetry parameter, corresponding to a biaxial nematic phase. The high values obtained for the asymmetry parameter at the lower end of the nematic range are well above experimental error and constitute a definite proof of the biaxial nature of the nematic phase exhibited by the studied compound for those temperatures.

BRITO PALMA, L, Coito FV, NEVES DA SILVA R.  2005.  Diagnosis of parametric faults based on identification and statistical methods. Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC’05. 44th IEEE Conference on. :3838–3843.: IEEE Abstract

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Gago, S, Fernandes JA, Rainho JP, Ferreira RAS, Pillinger M, Valente AA, Santos TM, Carlos LD, Ribeiro-Claro PJA, Goncalves IS.  2005.  Highly luminescent tris(beta-diketonate)europium(III) complexes immobilized in a functionalized mesoporous silica. Chemistry of Materials. 17:5077-5084., Number 20 AbstractWebsite
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Gago, S, Pillinger M, Ferreira RAS, Carlos LD, Santos TM, Goncalves IS.  2005.  Immobilization of lanthanide ions in a pillared layered double hydroxide. Chemistry of Materials. 17:5803-5809., Number 23 AbstractWebsite
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Carvalho, AL, Pires VMR, Gloster TM, Turkenburg JP, Prates JAM, Ferreira LMA, Romao MJ, Davies GJ, Fontes C, Gilbert HJ.  2005.  Insights into the structural determinants of cohesin dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA. Journal of Molecular Biology. 349:909-915., Number 5 AbstractWebsite
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Schafer, T, Branco LC, Fortunato R, Izak P, Rodrigues CM, Afonso CAM, Crespo JG.  2005.  Opportunities for membrane separation processes using ionic liquids. Ionic Liquids Iiib: Fundamentals, Progress, Challenges and Opportunities: Transformations and Processes. 902(Rogers, R. D., Seddon, K. R., Eds.).:97-110. Abstract
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Palma, LB, Coito FV, da Silva RN.  2005.  Process fault diagnosis approach based on neural observers. Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. 1:4–pp.: IEEE Abstract

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Costa, T, Miguel MG, Lindman B, Schillen K, Lima JC, de Melo JS.  2005.  Self-assembly of a hydrophobically modified naphthalene-labeled poly(acrylic acid) polyelectrolyte in water: Organic solvent mixtures followed by steady-state and time-resolved fluorescence. Journal of Physical Chemistry B. 109:3243-3251., Number 8 Abstract
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Coito, F, Almeida P, Palma LB.  2005.  SMCRVI-a Labview/Matlab based tool for remote monitoring and control. Emerging Technologies and Factory Automation, 2005. ETFA 2005. 10th IEEE Conference on. 2:6–pp.: IEEE Abstract

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Coito, F, Lemos JM, Alves SS.  2005.  Stochastic Extremum Seeking in the Presence of Constraints. World Congress. 16:266–266., Number 1 Abstract

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Santos-Silva, T, Trincao J, Carvalho AL, Bonifacio C, Auchere F, Moura I, Moura JJG, Romao MJ.  2005.  Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61:967-970. AbstractWebsite
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