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2015
Restani, {RB }, Conde J, Pires {RF }, Martins P, Fernandes {AR}, Baptista {PV}, Bonifacio {VDB }, Aguiar-Ricardo A.  2015.  POxylated Polyurea Dendrimers: Smart Core-Shell Vectors with IC50 Lowering Capacity, aug. Macromolecular Bioscience. 15:1045–1051., Number 8: WILEY-V C H VERLAG GMBH Abstract

The design and preparation of highly efficient drug delivery platforms using green methodologies is at the forefront of nanotherapeutics research. POxylated polyurea dendrimers are efficiently synthesized using a supercritical-assisted polymerization in carbon dioxide. These fluorescent, pH-responsive and water-soluble core-shell smart nanocarriers show low toxicity in terms of cell viability and absence of glutathione depletion, two of the major side effect limitations of current vectors. The materials are also found to act as good transfection agents, through a mechanism involving an endosomal pathway, being able to reduce 100-fold the IC50 of paclitaxel.

Larguinho, M, Santos S, Almeida J, Baptista P.  2015.  DNA adduct identification using gold-aptamer nanoprobes, apr. Iet Nanobiotechnology. 9:95–101., Number 2: INST ENGINEERING TECHNOLOGY-IET Abstract

The optical and physico-chemical properties of gold nanoparticles (AuNPs) have prompted new and improved approaches which have greatly evolved the fields of biosensing and molecular detection. In this study, the authors took advantage of AuNPs' ease of modification and functionalised it with selected DNA aptamers using a salt aging method to produce gold-aptamer nanoprobes. After characterisation, these nanoprobes were subsequently used for biomolecular detection of glycidamide (GA)-guanine (Gua) adducts generated in vitro. The results are based on differences in nanoprobe stabilisation against salt-induced aggregation, similar to the non-cross-linking method developed by Baptista for discrimination of specific sequences. Alkylated Guas were efficiently discriminated from deoxyguanosine and GA in solution. Despite this, a clear identification of DNA adducts derived from genomic DNA alkylation has proven to be a more challenging task.

Vinhas, R, Correia C, Ribeiro P, Lourenco A, Sousa A, Fernandes A, Baptista P.  2015.  GOLD NANOPROBES IN THE DIAGNOSTIC OF CHRONIC MYELOID LEUKEMIA: DETECTION OF THE E14A2 BCR-ABL TRANSCRIPT DIRECTLY IN RNA SAMPLES, apr. Leukemia research. 39:S90–S90.: PERGAMON-ELSEVIER SCIENCE LTD Abstract
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Pedrosa, P, Vinhas R, Fernandes A, Baptista PV.  2015.  Gold Nanotheranostics: Proof-of-Concept or Clinical Tool?, 2015/10/27/accep Nanomaterials. 5(4)(Selvan, Subramanian Tamil, Ed.).:1853-1879.: MDPI AbstractWebsite

Nanoparticles have been making their way in biomedical applications and personalized medicine, allowing for the coupling of diagnostics and therapeutics into a single nanomaterial—nanotheranostics. Gold nanoparticles, in particular, have unique features that make them excellent nanomaterials for theranostics, enabling the integration of targeting, imaging and therapeutics in a single platform, with proven applicability in the management of heterogeneous diseases, such as cancer. In this review, we focus on gold nanoparticle-based theranostics at the lab bench, through pre-clinical and clinical stages. With few products facing clinical trials, much remains to be done to effectively assess the real benefits of nanotheranostics at the clinical level. Hence, we also discuss the efforts currently being made to translate nanotheranostics into the market, as well as their commercial impact.

Carvalho, HF, Roque ACA, Iranzo O, Branco RJF.  2015.  Comparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution, 2015/09/23. PLoS ONE. 10(9):e0138118-.: Public Library of Science AbstractWebsite

Metalloproteases have evolved in a vast number of biological systems, being one of the most diverse types of proteases and presenting a wide range of folds and catalytic metal ions. Given the increasing understanding of protein internal dynamics and its role in enzyme function, we are interested in assessing how the structural heterogeneity of metalloproteases translates into their dynamics. Therefore, the dynamical profile of the clan MA type protein thermolysin, derived from an Elastic Network Model of protein structure, was evaluated against those obtained from a set of experimental structures and molecular dynamics simulation trajectories. A close correspondence was obtained between modes derived from the coarse-grained model and the subspace of functionally-relevant motions observed experimentally, the later being shown to be encoded in the internal dynamics of the protein. This prompted the use of dynamics-based comparison methods that employ such coarse-grained models in a representative set of clan members, allowing for its quantitative description in terms of structural and dynamical variability. Although members show structural similarity, they nonetheless present distinct dynamical profiles, with no apparent correlation between structural and dynamical relatedness. However, previously unnoticed dynamical similarity was found between the relevant members Carboxypeptidase Pfu, Leishmanolysin, and Botulinum Neurotoxin Type A, despite sharing no structural similarity. Inspection of the respective alignments shows that dynamical similarity has a functional basis, namely the need for maintaining proper intermolecular interactions with the respective substrates. These results suggest that distinct selective pressure mechanisms act on metalloproteases at structural and dynamical levels through the course of their evolution. This work shows how new insights on metalloprotease function and evolution can be assessed with comparison schemes that incorporate information on protein dynamics. The integration of these newly developed tools, if applied to other protein families, can lead to more accurate and descriptive protein classification systems.

Ferraz, R, Costa-Rodrigues J, Fernandes MH, Santos MM, Marrucho IM, Rebelo LPN, Prudencio C, Noronha JP, Petrovski Z, Branco LC.  2015.  Antitumor Activity of Ionic Liquids Based on Ampicillin, 2015. Chemmedchem. 10(9):1480-1483. AbstractWebsite
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Ventura, MG, Paninho AI, Nunes AVM, Fonseca IM, Branco LC.  2015.  Biocompatible locust bean gum mesoporous matrices prepared by ionic liquids and a scCO(2) sustainable system, 2015. Rsc Advances. 5(130):107700-107706. AbstractWebsite
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Delgado, JM, Raymundo A, Vilarigues M, Branco LC, Laia CAT.  2015.  Characterization of a Novel Intrinsic Luminescent Room-Temperature Ionic Liquid Based on P-6,P-6,P-6,P-14 ANS, 2015. Chemistry-a European Journal. 21(2):726-732. AbstractWebsite
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Mendo, AS, Figueiredo S, Roma-Rodrigues C, Videira PA, Ma Z, Diniz M, Larguinho M, Costa PM, Lima JC, Pombeiro AJL, Baptista PV, Fernandes AR.  2015.  Characterization of antiproliferative potential and biological targets of a copper compound containing 4'-phenyl terpyridine, 2015. Journal of Biological Inorganic Chemistry. 20(6):935-948. AbstractWebsite
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Cruz, L, Basilio N, Mateus N, Pina F, de Freitas V.  2015.  Characterization of Kinetic and Thermodynamic Parameters of Cyanidin-3-glucoside Methyl and Glucuronyl Metabolite Conjugates, 2015. Journal of Physical Chemistry B. 119(5):2010-2018. AbstractWebsite
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Carrera, GVSM, Jordao N, Branco LC, da Ponte MN.  2015.  CO2 capture and reversible release using mono-saccharides and an organic superbase, 2015. Journal of Supercritical Fluids. 105:151-157. AbstractWebsite
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Carrera, GVSM, Jordao N, Branco LC, da Ponte MN.  2015.  CO2 capture systems based on saccharides and organic superbases, 2015. Faraday Discussions. 183:429-444. AbstractWebsite
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Viciosa, MT, Santos G, Costa A, Danede F, Branco LC, Jordao N, Correia NT, Dionisio M.  2015.  Dipolar motions and ionic conduction in an ibuprofen derived ionic liquid, 2015. Physical Chemistry Chemical Physics. 17(37):24108-24120. AbstractWebsite
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Stampar, SN, Morandini AC, Branco LC, da Silveira FL, Migotto AE.  2015.  Drifting in the oceans: Isarachnanthus nocturnus (Cnidaria, Ceriantharia, Arachnactidae), an anthozoan with an extended planktonic stage, 2015. Marine Biology. 162(11):2161-2169. AbstractWebsite
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Jordao, N, Cruz H, Branco A, Pina F, Branco LC.  2015.  Electrochromic Devices Based on Disubstituted Oxo-Bipyridinium Ionic Liquids, 2015. Chempluschem. 80(1):202-208. AbstractWebsite
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Basilio, N, Laia CAT, Pina F.  2015.  Excited-State Proton Transfer in Confined Medium. 4-Methy1-7-hydroxyflavylium and beta-Naphthol Incorporated in Cucurbit 7 uril, 2015. Journal of Physical Chemistry B. 119(6):2749-2757. AbstractWebsite
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Basilio, N, Spudeit DA, Bastos J, Scorsin L, Fiedler HD, Nome F, Garcia-Rio L.  2015.  Exploring the charged nature of supramolecular micelles based on p-sulfonatocalix 6 arene and dodecyltrimethylammonium bromide, 2015. Physical Chemistry Chemical Physics. 17(39):26378-26385. AbstractWebsite
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Gago, S, Basilio N, Moro AJ, Pina F.  2015.  Flavylium based dual photochromism: addressing cis-trans isomerization and ring opening-closure by different light inputs, 2015. Chemical Communications. 51(34):7349-7351. AbstractWebsite
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Fernandez-Rosas, J, Pessego M, Cepeda-Plaza M, Basilio N, Parajo M, Rodriguez-Dafonte P, Garcia-Rio L.  2015.  gamma-Cyclodextrin modulates the chemical reactivity by multiple complexation, 2015. Organic & Biomolecular Chemistry. 13(4):1213-1224. AbstractWebsite
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Bassani, DM, Cucinotta F, Bohne C, Basilio N, Lemon C, Allain C, Sundstrom V, Campagna S, Rohacova J, Ketteler Y, Ryan STJ, Vos J, de Silva AP, Slota M.  2015.  Light activated molecular machines and logic gates: general discussion, 2015. Faraday Discussions. 185:399-411. AbstractWebsite
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Tiago, G, Restolho J, Forte A, Colaco R, Branco LC, Saramago B.  2015.  Novel ionic liquids for interfacial and tribological applications, 2015. Colloids and Surfaces a-Physicochemical and Engineering Aspects. 472:1-8. AbstractWebsite
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Nascimento, SMC, Linhares JMM, Joao CAR, Amano K, Montagner C, Melo MJ, Vilarigues M, de Freitas MH, Alfaro C, Bailao A.  2015.  The preferred chromatic composition of unfamiliar paintings is similar to original, 2015. Perception. 44:134-134. AbstractWebsite
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Carrera, GVSM, Jordao N, Santos MM, da Ponte MN, Branco LC.  2015.  Reversible systems based on CO2, amino-acids and organic superbases, 2015. Rsc Advances. 5(45):35564-35571. AbstractWebsite
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Pikramenou, Z, Weinstein J, Pan Q, Lewis F, Bassani DM, Wurthner F, Moucheron C, Slota M, Diaz-Moscoso A, Karlsson J, Basilio N, Adams D, Scandola F, Bohne C, Lemon C, Campagna S, Rohacova J, Ohashi K, Plotz PA, Monti F, Kelly JM, Keane P, Gibson E, Lemercier G, Ruggi A, Cucinotta F, Gust D, Bradberry S, Vos J, Pistolis G, Mauro M, Tuite E, De Cola L, Ceroni P, Maneiro M, Galoppini E, Gunnlaugsson T.  2015.  Self-organization of photo-active nanostructures: general discussion, 2015. Faraday Discussions. 185:529-548. AbstractWebsite
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