Publications

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2013
Carrera, GVSM, Costa A, da Ponte MN, Branco LC.  2013.  Use of Organic Superbases and Temperature Effects for the Development of Reversible Protic Amino Acid Salts. Synlett. 24:2525-2530., Number 19 Abstract
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2012
Leydet, Y, Gavara R, Petrov V, Diniz AM, Parola AJ, Lima JC, Pina F.  2012.  The effect of self-aggregation on the determination of the kinetic and thermodynamic constants of the network of chemical reactions in 3-glucoside anthocyanins, 2012. Phytochemistry. 83:125-135. Abstract

The six most common 3-glucoside anthocyanins, pelargonidin-3-glucoside, peonidin-3-glucoside, delphinidin-3-glucoside, malvidin-3-glucoside, cyanidin-3-glucoside and petunidin-3-glucoside were studied in great detail by NMR, UV-vis absorption and stopped flow. For each anthocyanin, the thermodynamic and kinetic constants of the network of chemical reactions were calculated at different anthocyanin concentration, from 6 x 10(-6) M up to 8 x 10(-4) M; an increasing of the flavylium cation acidity constant to give quinoidal base and a decreasing of the flavylium cation hydration constant to give hemiketal were observed by increasing the anthocyanin concentration. These effects are attributed to the self-aggregation of the flavylium cation and quinoidal base, which is stronger in the last case. The UV-vis and H-1 NMR spectral variations resulting from the increasing of the anthocyanin concentration were discussed in terms of two aggregation models; monomer-dimer and isodesmic, the last one considering the formation of higher order aggregates possessing the same aggregation constant of the dimer. The self-aggregation constant of flavylium cation at pH = 1.0, calculated by both models increases by increasing the number of methoxy (-OCH3) or hydroxy (-OH) substituents following the order: myrtillin (2 -OH), oenin (2 -OCH3), 3-OGI-petunidin (1 -OH, 1 -OCH3), kuromanin (1 -OH), 3-OGI-peonidin (1 -OCH3) and callistephin (none). Evidence for flavylium aggregates possessing a shape between J and H was achieved, as well as for the formation of higher order aggregates. (C) 2012 Elsevier Ltd. All rights reserved.

Rondao, R, de Melo JS, Melo MJ, Parola AJ.  2012.  Excited-State Isomerization of Leuco Indigo, 2012. Journal of Physical Chemistry A. 116:2826-2832. Abstract

The photoreaction of indigo and two other derivatives in its reduced (leuco) form was investigated by absorption and fluorescence (steady-state and time-resolved) techniques. The fluorescence quantum yield (phi(F)) dependence with the UV irradiation time was found to increase up to a value of phi(F) approximate to 0.2-0.3 (after 16 min) for indigo and phi(F) = 0.2 (at similar to 150 min) for its derivative 4,4'-dibutoxy-7,7'-dimethoxy-5,5'-dinitroindigo (DBMNI). With a model compound, where rotation around the central C-C bond is blocked, the phi(F) value was found constant with the UV irradiation time. Time-resolved fluorescence revealed that initially the decays are fitted with a biexponential law (with 0.12 and 2.17 ns), ending with an almost monoexponential decay (similar to 2.17 ns). Quantum yields for the isomerization photoreaction (phi(R)) were also obtained for indigo and DBMNI with values of 0.9 and 0.007, respectively. The results are rationalized in terms of a photoisomerization (conversion) reaction occurring in the first excited singlet state of trans to cis forms of leuco indigo.

Petrov, V, Parola AJ, Pina F.  2012.  Isomerization between 2-(2,4-Dihydroxystyryl)-1-benzopyrylium and 7-Hydroxy-2-(4-hydroxystyryl)-1-benzopyrylium, 2012. Journal of Physical Chemistry A. 116:8107-8118. Abstract

2-Phenyl-1-benzopyrylium (flavylium) and 2-styryl-1-benzopyrylium (styrylflavylium) cations establish in aqueous solution a series of equilibria defining chemical reaction networks responsive to several stimuli (pH, light, redox potential). Control over the mole fraction distribution of species by applying the appropiate stimuli defines a horizontal approach to supramolecular chemistry, in agreement with the customary bottom-up approach toward complex systems. In this work, we designed an asymmetric styrylchalcone able to cyclize in two different ways, producing two isomeric styrylflavylium cations whose chemical reaction networks are thus interconnected. The chemical reaction networks of 2-(2,4-dihydroxystyryl)-1-benzopyrylium (AH(+)) and 7-hydroxy-2-(4-hydroxystyryl)-1-benzopyrylium (AH(iso)(+)) comprise the usual species observed in flavylium-derived networks, in this case, the styryl derivatives of quinoidal bases, hemiketals, and chalcones. The thermodynamics and kinetics of the crossed networks were characterized by the use of UV-vis absorption and NMR spectroscopy as well as time-resolved pH jumps followed by stopped-flow. The two styrylflavylium cations are connected (isomerize) through two alternative intermediates, the asymmetric trans-styrylchalcone (Ct) and a spiropyran-type intermediate (SP). At pH = 1, AH(+) slowly evolves (k(obs) approximate to 10(-5) s(-1)) to a mixture containing 62% AH(iso)(+),s0 through the Ct intermediate, while at pH = 5, the SP intermediate is involved. The observed rate constants for the conversion of the styrylflavylim cations into equilibrium mixtures containing essentially Ct follow a pH-dependent bell-shaped curve in both networks. While at pH = 1 in the dark, AH(+) evolves to an equilibrium mixture containing predominantly AH(iso)(+) irradiation at lambda > 435 nm induces the opposite conversion.

Gago, S, Petrov V, Parola AJ, Pina F.  2012.  Synthesis, characterization and photochromism of 3 '-butoxyflavylium derivatives, 2012. Journal of Photochemistry and Photobiology a-Chemistry. 244:54-64. Abstract

The compounds 3'-butoxy-7-methoxyflavylium and 3'-butoxy-7-hydroxyflavylium were synthesized and the respective equilibrium and rate constants determined by two complementary techniques, pH jumps and flash photolysis. An experimental strategy based on these two techniques allowed calculation of all the equilibrium and rate constants of the system carried out for the first time in flavylium compounds lacking of the high cis-trans isomerization barrier. Irradiation of the trans-chalcone gives rise to the formation of the cis-chalcone still during the lifetime of the flash, which disappears through two parallel reactions: (i) one leading to the recovery of the trans-chalcone and the other, (ii) forming flavylium cation via hemiketal. This last reaction is globally dependent on pH and at less acidic pH the system reverts back to the trans-chalcone. The highest yield of colour production upon the flash takes place in the pH range 2-3.5. (c) 2012 Elsevier B.V. All rights reserved.

Gago, S, Petrov V, Diniz AM, Parola AJ, Cunha-Silva L, Pina F.  2012.  Unidirectional Switching between Two Flavylium Reaction Networks by the Action of Alternate Stimuli of Acid and Base, 2012. Journal of Physical Chemistry A. 116:372-380. Abstract

The introduction of an ester group in the flavylium core allowed the reversible conversion between two different flavylium compounds each one exhibiting its own reaction network. An unidirectional switching cycle between 7-diethylamino-2-(4-(methoxy-carbonyl)phenyl)-1-benzopyrylium and 2-(4-carboxyphenyl)-7-diethylamino-1-benzopyrylium was achieved by means of alternate acid and base stimuli. Addition of base to a methanolic solution of the ester derivative gives rise to the trans-chalcone of the parent carboxylic acid, which upon acidification of the solution forms the respective flavylium cation. This species esterifies under very acidic conditions to restore the original methyl ester derivative. The chemical reaction networks of both compounds were fully characterized from their thermodynamic and kinetic aspects, by a series of pH jumps followed by UV-vis absorption and emission spectroscopy, stopped flow and H-down arrow NMR. The crystal structure of the trans-chalcone of the ester derivative was unveiled showing a supramolecular structure involving hydrogen bonding.

Rodriguez, L, Lima JC, Ferrer M, Rossell O, Engeser M.  2012.  3D Au-Ag heterometallic supramolecular cage: Triplet capture by heavy atom effect. Inorganica Chimica Acta. 381:195-202. Abstract
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Bonifacio, VDB, Correia VG, Pinho MG, Lima JC, Aguiar-Ricardo A.  2012.  Blue emission of carbamic acid oligooxazoline biotags. Materials Letters. 81:205-208. Abstract
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Pina, F, Melo MJ, Laia CAT, Parola JA, Lima JC.  2012.  Chemistry and applications of flavylium compounds: a handful of colours. Chemical Society Reviews. 41:869-908., Number 2 Abstract
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Otero, V, Carlyle L, Vilarigues M, Melo MJ.  2012.  Chrome yellow in nineteenth century art: historic reconstructions of an artists' pigment. Rsc Advances. 2:1798-1805., Number 5 Abstract
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Miguel, C, Lopes JA, Clarke M, Melo MJ.  2012.  Combining infrared spectroscopy with chemometric analysis for the characterization of proteinaceous binders in medieval paints. Chemometrics and Intelligent Laboratory Systems. 119:32-38. Abstract
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Rodriguez, L, Ferrer M, Crehuet R, Anglada J, Lima JC.  2012.  Correlation between Photophysical Parameters and Gold-Gold Distances in Gold(I) (4-Pyridyl)ethynyl Complexes. Inorganic Chemistry. 51:7636-7641., Number 14 Abstract
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Ferraz, R, Branco LC, Marrucho IM, Araujo JMM, Rebelo LPN, da Ponte MN, Prudencio C, Noronha JP, Petrovski Z.  2012.  Development of novel ionic liquids based on ampicillin. Medchemcomm. 3:494-497., Number 4 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Electrochromic Properties of Inkjet Printed Vanadium Oxide Gel on Flexible Polyethylene Terephthalate/Indium Tin Oxide Electrodes. Acs Applied Materials & Interfaces. 4:5266-5275., Number 10 Abstract
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Mendes, A, Branco LC, Morais C, Simplicio AL.  2012.  Electroosmotic flow modulation in capillary electrophoresis by organic cations from ionic liquids. Electrophoresis. 33:1182-1190., Number 7 Abstract
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Rosa, J, Conde J, de la Fuente JM, Lima JC, Baptista PV.  2012.  Gold-nanobeacons for real-time monitoring of RNA synthesis. Biosensors & Bioelectronics. 36:161-167., Number 1 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Inkjet Printing of Sol-Gel Synthesized Hydrated Tungsten Oxide Nanoparticles for Flexible Electrochromic Devices. Acs Applied Materials & Interfaces. 4:1330-1340., Number 3 Abstract
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Gonzalez, J, Gavara R, Gadea O, Blasco S, Garcia-Espana E, Pina F.  2012.  Kinetics of Zn2+ complexation by a ditopic phenanthroline-azamacrocyclic scorpiand-like receptor. Chemical Communications. 48:1994-1996., Number 14 Abstract
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Muralha, VSF, Miguel C, Melo MJ.  2012.  Micro-Raman study of Medieval Cistercian 12-13th century manuscripts: Santa Maria de Alcobaca, Portugal. Journal of Raman Spectroscopy. 43:1737-1746., Number 11 Abstract
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Conde, J, Rosa J, Lima JC, Baptista PV.  2012.  Nanophotonics for Molecular Diagnostics and Therapy Applications. International Journal of Photoenergy. Abstract
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Gago, S, Gomes AC, Cunha-Silva L, Pillinger M, Goncalves IS, Almeida Paz FA.  2012.  A novel dinuclear MoVI complex with tris(3,5-dimethyl-1H-pyrazol-1-yl)methane. Acta Crystallographica Section C-Crystal Structure Communications. 68:M73-M75. Abstract
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Oliveira, E, Luis Capelo J, Lima JC, Lodeiro C.  2012.  Novel emissive bio-inspired non-proteinogenic coumarin-alanine amino acid: fluorescent probe for polyfunctional systems. Amino Acids. 43:1779-1790., Number 4 Abstract
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Roldao, A, Mellado MCM, Lima JC, Carrondo MJT, Alves PM, Oliveira R.  2012.  On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP. Plos Computational Biology. 8, Number 2 Abstract
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Velasco, LF, Fonseca IM, Parra JB, Lima JC, Ania CO.  2012.  Photochemical behaviour of activated carbons under UV irradiation. Carbon. 50:249-258., Number 1 Abstract
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