Publications

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2013
Cordeiro, M, Giestas L, Lima JC, Baptista P.  2013.  Coupling an universal primer to SBE combined spectral codification strategy for single nucleotide polymorphism analysis. Journal of Biotechnology. 168:90-94., Number 1 Abstract

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Neves, CS, Granadeiro CM, Cunha-Silva L, Ananias D, Gago S, Feio G, Carvalho PA, Eaton P, Balula SS, Pereira E.  2013.  Europium Polyoxometalates Encapsulated in Silica Nanoparticles Characterization and Photoluminescence Studies. European Journal of Inorganic Chemistry. :2877-2886., Number 16 Abstract
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Pereira, CCL, Dias S, Coutinho I, Leal JP, Branco LC, Laia CAT.  2013.  Europium(III) Tetrakis(beta-diketonate) Complex as an Ionic Liquid: A Calorimetric and Spectroscopic Study. Inorganic Chemistry. 52:3755-3764., Number 7 Abstract
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Gomes, L, Marques A, Branco A, Araujo J, Simoes M, Cardoso S, Silva F, Henriques I, Laia CAT, Costa C.  2013.  IZO deposition by RF and DC sputtering on paper and application on flexible electrochromic devices. Displays. 34:326-333., Number 4 Abstract
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Couto, RM, Lourenco C, Lima JC, Simoes PC, Branco LC.  2013.  Studies of the Influence in Acetonitrile Polarity Using Imidazolium Ionic Liquids as Additives. Journal of Chemical and Engineering Data. 58:1449-1453., Number 6 Abstract
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Gago, S, Cabrita L, Carlos Lima J, Branco LC, Pina F.  2013.  Synthesis and characterization of luminescent room temperature ionic liquids based on Ru(bpy)(CN)(4)(2-). Dalton Transactions. 42:6213-6218., Number 17 Abstract
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Carrera, GVSM, Costa A, da Ponte MN, Branco LC.  2013.  Use of Organic Superbases and Temperature Effects for the Development of Reversible Protic Amino Acid Salts. Synlett. 24:2525-2530., Number 19 Abstract
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2012
Gago, S, Petrov V, Diniz AM, Parola AJ, Cunha-Silva L, Pina F.  2012.  Unidirectional Switching between Two Flavylium Reaction Networks by the Action of Alternate Stimuli of Acid and Base, 2012. Journal of Physical Chemistry A. 116:372-380. Abstract

The introduction of an ester group in the flavylium core allowed the reversible conversion between two different flavylium compounds each one exhibiting its own reaction network. An unidirectional switching cycle between 7-diethylamino-2-(4-(methoxy-carbonyl)phenyl)-1-benzopyrylium and 2-(4-carboxyphenyl)-7-diethylamino-1-benzopyrylium was achieved by means of alternate acid and base stimuli. Addition of base to a methanolic solution of the ester derivative gives rise to the trans-chalcone of the parent carboxylic acid, which upon acidification of the solution forms the respective flavylium cation. This species esterifies under very acidic conditions to restore the original methyl ester derivative. The chemical reaction networks of both compounds were fully characterized from their thermodynamic and kinetic aspects, by a series of pH jumps followed by UV-vis absorption and emission spectroscopy, stopped flow and H-down arrow NMR. The crystal structure of the trans-chalcone of the ester derivative was unveiled showing a supramolecular structure involving hydrogen bonding.

Bonifacio, VDB, Correia VG, Pinho MG, Lima JC, Aguiar-Ricardo A.  2012.  Blue emission of carbamic acid oligooxazoline biotags. Materials Letters. 81:205-208. Abstract
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Otero, V, Carlyle L, Vilarigues M, Melo MJ.  2012.  Chrome yellow in nineteenth century art: historic reconstructions of an artists' pigment. Rsc Advances. 2:1798-1805., Number 5 Abstract
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Miguel, C, Lopes JA, Clarke M, Melo MJ.  2012.  Combining infrared spectroscopy with chemometric analysis for the characterization of proteinaceous binders in medieval paints. Chemometrics and Intelligent Laboratory Systems. 119:32-38. Abstract
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Rodriguez, L, Ferrer M, Crehuet R, Anglada J, Lima JC.  2012.  Correlation between Photophysical Parameters and Gold-Gold Distances in Gold(I) (4-Pyridyl)ethynyl Complexes. Inorganic Chemistry. 51:7636-7641., Number 14 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Electrochromic Properties of Inkjet Printed Vanadium Oxide Gel on Flexible Polyethylene Terephthalate/Indium Tin Oxide Electrodes. Acs Applied Materials & Interfaces. 4:5266-5275., Number 10 Abstract
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Rosa, J, Conde J, de la Fuente JM, Lima JC, Baptista PV.  2012.  Gold-nanobeacons for real-time monitoring of RNA synthesis. Biosensors & Bioelectronics. 36:161-167., Number 1 Abstract
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Costa, C, Pinheiro C, Henriques I, Laia CAT.  2012.  Inkjet Printing of Sol-Gel Synthesized Hydrated Tungsten Oxide Nanoparticles for Flexible Electrochromic Devices. Acs Applied Materials & Interfaces. 4:1330-1340., Number 3 Abstract
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Conde, J, Rosa J, Lima JC, Baptista PV.  2012.  Nanophotonics for Molecular Diagnostics and Therapy Applications. International Journal of Photoenergy. Abstract
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Gago, S, Gomes AC, Cunha-Silva L, Pillinger M, Goncalves IS, Almeida Paz FA.  2012.  A novel dinuclear MoVI complex with tris(3,5-dimethyl-1H-pyrazol-1-yl)methane. Acta Crystallographica Section C-Crystal Structure Communications. 68:M73-M75. Abstract
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Roldao, A, Mellado MCM, Lima JC, Carrondo MJT, Alves PM, Oliveira R.  2012.  On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP. Plos Computational Biology. 8, Number 2 Abstract
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Carrera, GVSM, da Ponte MN, Branco LC.  2012.  Synthesis and properties of reversible ionic liquids using CO2, mono- to multiple functionalization. Tetrahedron. 68:7408-7413., Number 36 Abstract
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2011
Avo, J, Parola AJ, Lima JC, Pina F, Cunha-Silva L.  2011.  Phase transition thermochromism based on C-H acidity of 4-alkylflavylium compounds in Pluronic F-127, 2011. Journal of Materials Chemistry. 21:16628-16637. Abstract

In moderately acidic water/ethanol solutions, 7-(naphthalen-2-ylmethyl)-5,6-dihydrobenzo[c]xanthen12-ium perchlorate shows C-H proton acidity giving rise to an ethylenic base species, instead of the hydration products of the typical flavylium network of chemical reactions, hemiketal, cis-chalcone and trans-chalcone. The kinetics of this acid-base process is much slower, k(obs)(s(-1)) = 3.5 x 10(-3) + 0.16[H(+)], than those commonly observed for O-H deprotonation. In the presence of the triblock copolymer Pluronic F-127, the ethylenic base is dramatically stabilized shifting the pK(a) from 1.35 (in ethanol : water (1 : 1) to -0.35. Taking profit from the well-described temperature dependence of this polymer, a phase transition thermochromic system was achieved. The system was cycled between 5 and 35 degrees C with negligible changes in absorbance after 20 cycles.

Leydet, Y, Gavara R, Cunha-Silva L, Parola AJ, Pina F.  2011.  Phase-Dependent Photochromism of a Lactone-Stabilized Chromene from a Flavylium Reaction Network, 2011. Chemistry-a European Journal. 17:3663-3671. Abstract

New trans-2-hydroxychalcones bearing a carboxylate group at position 2' (Ct(-)) were synthesized (compounds 2 and 3). These compounds lead to a network of chemical reactions depending on pH value, light, and solvent. In water, when the pH value is lowered, the ionized trans-chalcone is protonated and the flavylium cation AH(+) is formed at very acidic pH values through hemiketal B and cis-chalcone Cc, with global acidity constants of pK'(a) <= -1 and approximate to 0.1, respectively, for 2 and 3. The electron-acceptor character of the carboxylic substituent not only increases the observed acidity of the flavylium cation, but also decreases the rate of the ring-opening/closing from a subsecond timescale to hours relative to model compound 1 (without carboxylate). The photochemistry of the network was studied in detail by means of continuous irradiation, monitored by UV/Vis absorption and H-1 and C-13 NMR spectroscopic analysis. Although compound 3 is only slightly photoactive, compound 2 (Ct(-)) reacts in aqueous solutions (lambda(irr) = 313 nm) to form B- and Cc(-), with a global quantum yield of 0.15, and fully reverts back to Ct(-) with a rate constant of k = 6.7 x 10(-5) s(-1). The flavylium cation is no longer formed in methanol, and irradiation of Ct(-) leads to the formation of B- and the new lactone-trapped chromene species La. The formation of La takes place through a sequence of three photochemical steps: photoisomerization of Ct(-), photo-ring-closing reaction of Cc , and photolactonization of B-. Only the cis/trans isomerization and ring-closing reactions are thermally reversible on a timescale of seconds and hours, respectively. A photochromic system was achieved in rigid matrices of methanol (at 77 K) and 1-dodecanol (5 degrees C) by irradiating lactone La to give a red ortho-quinone allide through a photo-ring-opening reaction; the color disappears with a rate constant of k = 1.25 x 10(-2) s(-1) in 1-dodecanol at 5 degrees C.

Seixas de Melo, SJ, Cabral C, Lima JC, Macanita AL.  2011.  Characterization of the Singlet and Triplet Excited States of 3-Chloro-4-methylumbelliferone. Journal of Physical Chemistry a. 115:8392-8398., Number 30 Abstract
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Gomes, AC, Bruno SM, Gago S, Lopes RP, Machado DA, Carminatti AP, Valente AA, Pillinger M, Goncalves IS.  2011.  Epoxidation of cyclooctene using soluble or MCM-41-supported molybdenum tetracarbonyl-pyridylimine complexes as catalyst precursors. Journal of Organometallic Chemistry. 696:3543-3550., Number 22 Abstract
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Freitas, F, Alves VD, Torres CAV, Cruz M, Sousa I, Melo MJ, Ramos AM, Reis MAM.  2011.  Fucose-containing exopolysaccharide produced by the newly isolated Enterobacter strain A47 DSM 23139. Carbohydrate Polymers. 83:159-165., Number 1 Abstract
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Neves, P, Amarante TR, Gomes AC, Coelho AC, Gago S, Pillinger M, Goncalves IS, Silva CM, Valente AA.  2011.  Heterogeneous oxidation catalysts formed in situ from molybdenum tetracarbonyl complexes and tert-butyl hydroperoxide. Applied Catalysis a-General. 395:71-77., Number 1-2 Abstract
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