By Type: Journal Article

Conde, João, João Rosa, and Pedro V. Baptista. "Gold-Nanobeacons as a Theranostic System for the Detection and Inhibition of Specific Genes." Nature Protocol Exchange (2013). AbstractWebsite

This protocol describes the synthesis and detailed calibration of a gold nanoparticle-based nanobeacon (Au-nanobeacon) as an innovative theranostic approach for detection and inhibition of sequence-specific DNA and RNA for in vitro and ex vivo applications. Under hairpin configuration, proximity to gold nanoparticles leads to fluorescence quenching; hybridization to a complementary target restores fluorescence emission due to the gold nanobeacons’ conformational reorganization that causes the fluorophore and the AuNP to part from each other. This concept can easily be extended and adapted to assist the in vitro evaluation of silencing potential of a given sequence to be later used for ex vivo gene silencing and RNAi approaches, with the ability to monitor real-time gene delivery action. The time range for the entire protocol is ~8 days, including synthesis, functionalization and calibration of Au-nanobeacons, RNAi and gene silencing assays.

Conde, Joao, Furong Tian, Yulan Hernandez, Chenchen Bao, Daxiang Cui, Klaus-Peter Janssen, M. Ricardo Ibarra, Pedro V. Baptista, Tobias Stoeger, and Jesus M. de la Fuente. "In vivo tumor targeting via nanoparticle-mediated therapeutic siRNA coupled to inflammatory response in lung cancer mouse models." Biomaterials 34 (2013): 7744-7753. Abstract

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Cabral, Rita, and Pedro V. Baptista. "THE CHEMISTRY AND BIOLOGY OF GOLD NANOPARTICLE-MEDIATED PHOTOTHERMAL THERAPY: PROMISES AND CHALLENGES." Nano Life 3 (2013): 330001. AbstractWebsite

Under laser radiation, cells labeled with gold nanoparticles (AuNPs) are believed to suffer thermal damage due to the transfer of the absorbed light from the AuNPs to the cells. This process, which involves complex mechanisms such as the rapid electron–phonon decay in the AuNPs, followed by phonon–phonon relaxation, culminates in the localized heating of both the AuNPs and the cells, setting the rational for the use of these nanostructures, under laser light, in cancer photothermal therapy (PTT). Here, we discuss the chemical and biological aspects of this promising new therapeutic approach, including the advantages over conventional cancer therapies and the challenges that scientists still need to overcome to progress toward translation research

Branquinho, R., J. V. Pinto, T. Busani, P. Barquinha, L. Pereira, P. V. Baptista, R. Martins, and E. Fortunato. "Plastic Compatible Sputtered Ta2O5 Sensitive Layer for Oxide Semiconductor TFT Sensors." J. Display Technol 9 (2013): 723-728.
Cordeiro, M., L. Giestas, J. C. Lima, and Pedro Viana Baptista. "Coupling an universal primer to SBE combined spectral codification strategy for single nucleotide polymorphism analysis." J Biotechnol 168 (2013): 90-94. AbstractWebsite

We previously reported a strategy that combines Förster resonance energy transfer (FRET) based spectral codification with a single base extension (SBE) reaction for single nucleotide sequence discrimination in solution. This strategy is capable of unequivocally detect the allele variants present in solution. To extend the use of this tool to any locus of interest, it would be required the development of an universal approach capable of combining a sequence specific SBE primer to an universal sequence labeled and optimized for spectral codification.
Here, we extend this concept to a general strategy by means of a labeled universal oligonucleotide primer (donor), a sequence specific primer that allows for incorporation of the complementary acceptor labeled ddNTP, which allows discrimination the allele variant in the sample via the unambiguous FRET signature of the donor/acceptor pair.

Veigas, Bruno, Pedro Pedrosa, Isabel Couto, Miguel Viveiros, and Pedro V. Baptista. "Isothermal DNA amplification coupled to Au-nanoprobes for detection of mutations associated to Rifampicin resistance in Mycobacterium tuberculosis." Journal of Nanobiotechnology (2013).
Carlos, F. F., J. Silva-Nunes, O. Flores, M. Brito, G. Doria, L. Veiga, and P. V. Baptista. "Association of FTO and PPARG polymorphisms with obesity in Portuguese women." Diabetes Metab Syndr Obes 6 (2013): 241-5. AbstractWebsite

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Conde, João, João Rosa, João C. Lima, and Pedro V. Baptista. "Nanophotonics for Molecular Diagnostics and Therapy Applications." Int. J. Photoenergy 619530 (2012).
Doria, G., J. Conde, B. Veigas, L. Giestas, C. Almeida, M. Assunção, J. Rosa, and P. V. Baptista. "Noble metal nanoparticles for biosensing applications." Sensors (Basel) 12 (2012): 1657-87. AbstractWebsite

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Larguinho, Miguel, and Pedro V. Baptista. "Gold and silver nanoparticles for clinical diagnostics - from genomics to proteomics." J. Proteomics 75 (2012): 2811-2823.
Baptista, Pedro V. "RNA quantification with gold nanoprobes for cancer diagnostics." Clinics in Laboratory Medicine 32 (2012): 1-13.
Conde, J., J. Rosa, J. C. Lima, and P. V. Baptista. "Nanophotonics for Molecular Diagnostics and Therapy Applications." International Journal of Photoenergy (2012). Abstract

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Machado, Diana, Isabel Couto, João Perdigão, Liliana Rodrigues, Isabel Portugal, Pedro Baptista, Bruno Veigas, Leonard Amaral, and Miguel Viveiros. "Contribution of efflux to the emergence of isoniazid and multidrug resistance in Mycobacterium tuberculosis." PLoS ONE 7 (2012): e34538.
Veigas, Bruno, Jorge M. Jacob, Mafalda N. Costa, David S. Santos, Miguel Viveiros, Joao Inacio, Rodrigo Martins, Pedro Barquinha, Elvira Fortunato, and Pedro Viana Baptista. "Gold on paper-paper platform for Au-nanoprobe TB detection." Lab on a Chip 12 (2012): 4802-4808. Abstract

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Conde, João, Pedro V. Baptista, Yulan Hernández, Vanesa Sanz, and Jesus M. de la Fuente. "Modification of plasmid DNA topology by ‘histone-mimetic’ gold nanoparticles." Nanomedicine (2012).
Baptista, Pedro Viana. "Could gold nanoprobes be an important tool in cancer diagnostics?" Expert Review of Molecular Diagnostics 12 (2012): 541-543. Abstract

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dos Santos, Margarida Moreira, Margarida João Queiroz, and Pedro V. Baptista. "Enhancement of antibiotic effect via gold:silver alloy nanoparticles." J. Nanopar. Res. 14 (2012): 859.
Rosa, J., J. Conde, J. M. de la Fuente, J. C. Lima, and P. V. Baptista. "Gold-nanobeacons for real-time monitoring of RNA synthesis." Biosens Bioelectron 36 (2012): 161-7. AbstractWebsite

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Sanz, Vanesa, João Conde, Yulán Hernández, Pedro V. Baptista, M. R. Ibarra, and Jesús M. de la Fuente. "Effect of PEG biofunctional spacers and TAT peptide on dsRNA loading on gold nanoparticles." J. Nanoparticles Res. 14 (2012): 917.
Conde, Joao, Goncalo Doria, and Pedro Baptista. "Noble metal nanoparticles applications in cancer." Journal of drug delivery 2012 (2012): 751075. Abstract

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Conde, Joao, Alfredo Ambrosone, Vanesa Sanz, Yulan Hernandez, Valentina Marchesano, Furong Tian, Hannah Child, Catherine C. Berry, Ricardo M. Ibarra, Pedro V. Baptista, Claudia Tortiglione, and Jesus M. de la Fuente. "Design of Multifunctional Gold Nanoparticles for In Vitro and In Vivo Gene Silencing." Acs Nano 6 (2012): 8316-8324. Abstract

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Sanz, Vanesa, Joao Conde, Alfredo Ambrosone, Yulan Hernandez, Valentina Marchesasno, Giovani G. Estrada, Manuel R. Ibarra, Pedro V. Baptista, Furong Tian, Claudia Tortiglione, and Jesus M. de la Fuente. "Multifunctional gold nanoparticles for gene silencing." Abstracts of Papers of the American Chemical Society 243 (2012). Abstract

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Guirgis, Bassem S. S., Claudia Sa e Cunha, Ines Gomes, Miguel Cavadas, Isabel Silva, Goncalo Doria, Gregory L. Blatch, Pedro V. Baptista, Eulalia Pereira, Hassan M. E. Azzazy, Maria M. Mota, Miguel Prudencio, and Ricardo Franco. "Gold nanoparticle-based fluorescence immunoassay for malaria antigen detection." Analytical and Bioanalytical Chemistry 402 (2012): 1019-1027. Abstract

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