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Fernandez-Rosas, J, Pessego M, Cepeda-Plaza M, Basilio N, Parajo M, Rodriguez-Dafonte P, Garcia-Rio L.  2015.  gamma-Cyclodextrin modulates the chemical reactivity by multiple complexation, 2015. Organic & Biomolecular Chemistry. 13(4):1213-1224. Abstract
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Giestas, L, Petrov V, Baptista PV, Lima JC.  2009.  General FRET-based coding for application in multiplexing methods. Photochemical & Photobiological Sciences. 8:1130-1138., Number 8 Abstract
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Ramos, JJM, Afonso CAM, Branco LC.  2003.  Glass transition relaxation and fragility in two room temperature ionic liquids. Journal of Thermal Analysis and Calorimetry. 71:659-666., Number 2 Abstract
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Aguilo, E, Soler L, Casanovas A, Moro AJ, Lima JC, Rodriguez L, Llorca J.  2017.  Gold(I)-Complex-Titania Hybrid Photocatalyst for Hydrogen Production, 2017. Chemcatchem. 9(17):3289-3292. Abstract
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Rosa, J, Conde J, de la Fuente JM, Lima JC, Baptista PV.  2012.  Gold-nanobeacons for real-time monitoring of RNA synthesis. Biosensors & Bioelectronics. 36:161-167., Number 1 Abstract
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Oliveira, J, Bras NF, da Silva MA, Mateus N, Parola JA, de Freitas V.  2014.  Grape anthocyanin oligomerization: A putative mechanism for red color stabilization? Phytochemistry. 105:178-185. Abstract
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de Melo, JS, Albelda MT, Diaz P, Garcia-Espana E, Lodeiro C, Alves S, Lima JC, Pina F, Soriano C.  2002.  Ground and excited state properties of polyamine chains bearing two terminal naphthalene units. Journal of the Chemical Society-Perkin Transactions 2. :991-998., Number 5 Abstract
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Moreira, PF, Giestas L, Yihwa C, Vautier-Giongo C, Quina FH, Macanita AL, Lima JC.  2003.  Ground- and excited-state proton transfer in anthocyanins: From weak acids to superphotoacids. Journal of Physical Chemistry a. 107:4203-4210., Number 21 Abstract
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Laia, CAT, Costa SMB.  1998.  Ground- and excited-state solvation of a squaraine dye by water in dioxane. Chemical Physics Letters. 285:385-390., Number 5-6 Abstract
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Faustino, P, Miranda A, Silva MD, Alves C, Pinanco I, Ferreira C, Seixas MT, Pina F, Romao L.  2004.  Hb Yaounde beta 134(H12)Val -> Ala in association with Hb C beta 6(A3)Glu -> Lys in a Caucasian Portuguese family. Hemoglobin. 28:229-235., Number 3 Abstract
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Neves, P, Amarante TR, Gomes AC, Coelho AC, Gago S, Pillinger M, Goncalves IS, Silva CM, Valente AA.  2011.  Heterogeneous oxidation catalysts formed in situ from molybdenum tetracarbonyl complexes and tert-butyl hydroperoxide. Applied Catalysis a-General. 395:71-77., Number 1-2 Abstract
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Goncalves, IS, Lopes AD, Amarante TR, Almeida Paz FA, Silva NJO, Pillinger M, Gago S, Palacio F, Kuehn FE, Romao CC.  2009.  Heterometallic complexes involving iron(II) and rhenium(VII) centers connected by mu-oxido bridges. Dalton Transactions. :10199-10207., Number 46 Abstract
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Pessego, M, Gago S, Basilio N, Laia CAT, Parola AJ, Lima JC, Pina F.  2017.  Hiding and unveiling trans-chalcone in a constrained derivative of 4 ',7-dihydroxyflavylium in water: a versatile photochromic system, 2017. Organic & Biomolecular Chemistry. 15(2):338-347. Abstract
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Bianchi, A, Delgado-Pinar E, Garcia-Espana E, Giorgi C, Pina F.  2014.  Highlights of metal ion-based photochemical switches. Coordination Chemistry Reviews. 260:156-215. Abstract
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Bianchi, A, Delgado-Pinar E, Garcia-Espana E, Giorgi C, Pina F.  2014.  Highlights of metal ion-based photochemical switches. Coordination Chemistry Reviews. 260:156-215. Abstract
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Gago, S, Fernandes JA, Rainho JP, Ferreira RAS, Pillinger M, Valente AA, Santos TM, Carlos LD, Ribeiro-Claro PJA, Goncalves IS.  2005.  Highly luminescent tris(beta-diketonate)europium(III) complexes immobilized in a functionalized mesoporous silica. Chemistry of Materials. 17:5077-5084., Number 20 Abstract
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Branco, LC, Crespo JG, Afonso CAM.  2002.  Highly selective transport of organic compounds by using supported liquid membranes based on ionic liquids. Angewandte Chemie-International Edition. 41:2771-+., Number 15 Abstract
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Gomes, R, Parola AJ, Bastkowski F, Polkowska J, Klarner FG.  2009.  Host-Guest Interactions between Molecular Clips and Multistate Systems Based on Flavylium Salts, 2009. Journal of the American Chemical Society. 131:8922-8938. Abstract

Flavylium salts contain the basic structure and show a pH-dependent sequence of reactions identical to natural anthocyanins, which are responsible for most of the red and blue colors of flowers and fruits. In this work we investigated the effect of the water-soluble molecular clips C1 and C2 substituted by hydrogen phosphate or sulfate groups on the stability and reactions of the flavylium salts 1-4 by the use of UV-vis absorption, fluorescence, and NMR spectroscopy as well as of the time-resolved pH jump and flash photolysis methods. Clip C1 forms highly stable host-guest complexes with the flavylium salts 1 and 2 and the quinoidal base 3A in methanol. The binding constants were determined by fluorometric titration to be log K = 4.1, 4.7, and 5.6, respectively. Large complexation-induced (1)H NMR shifts of guest signals, Delta delta(max), indicate that in the case of the flavylium salts 1 and 2 the pyrylium ring and in the case of the quinoidal base 3A the o-hydroxyquinone ring are preferentially bound inside the clip cavity. Due to the poor solubility of these host-guest complexes in water, the association constants could be only determined in highly diluted aqueous solution by UV-vis titration experiments for the complex formation of clip C1 with the flavylium salt 3AH(+) at pH = 2 and the quinoidal base 3A at pH = 5.3 to be log K = 4.9 for both complexes. Similar results were obtained for the formation of the complexes of the sulfate-substituted clip C2 with flavylium salt 4AH(+) and its quinoidal base 4A which are slightly better soluble in water (log K = 4.3 and 4.0, respectively). According to the kinetic analysis (performed by using the methods mentioned above) the thermally induced trans-cis chalcone isomerization (4Ct -> 4Cc) and the H(2)O addition to flavylium cation 4AH(+) followed by H(+) elimination leading to hemiketal 4B are both retarded in the presence of clip C2, whereas the photochemically induced trans-cis isomerization (4Ct -> 4Cc) is not affected by clip C2. The results presented here are explained with dominating hydrophobic interactions between the molecular clips and the flavylium guest molecules. The other potential interactions (ion-ion, cation-pi, pi-pi, and CH-pi), which certainly determine the structures of these host-guest complexes to a large extent, seem to be of minor importance for their stability.

Gago, S, Fonseca IM, Parola AJ.  2013.  Hybrid mesoporous silica grafted with photoisomerizable 2-hydroxychalcones, 2013. Microporous and Mesoporous Materials. 180:40-47. Abstract

Hybrid photochromic mesoporous materials based on MCM-41 and SBA-15 were synthesized by covalent attachment of 3'-butoxy-7-hydroxyflavylium (Fl-OH) and 3'-butoxy-7-metoxyflavylium (Fl-OCH3) hydrogensulfates. The pristine materials were initially grafted with 3-chloropropyl groups, reacted with 3'-hydroxyacetophenone and finally condensed with appropriate salicylaldehydes to yield the new hybrids MCM-41-Fl-OH and SBA-15-Fl-OCH3. The materials were characterized by powder X-ray diffraction, N-2 adsorption, solid-state C-13 CPMAS NMR spectroscopy, and thermogravimetric and elemental analyses, which confirm the successful covalent bonding of the flavylium moieties with loadings of 16.90 +/- 0.05% and 11.78 +/- 0.04% (w/w) for MCM-41-Fl-OH and SBA-15-OCH3, respectively. Flavylium compounds originate in solution a multiequilibria reaction network than can be actuated by pH and light, defining pH-coupled photochromic systems. The new hybrids show pH-dependent reflectance spectra resembling those observed in solution, but shifted to higher pH ranges, indicating a higher stability of the grafted flavylium cations. Irradiation of these materials equilibrated at adequate pH values where the photoisomerizable trans-chalcones predominate shows formation of the respective flavylium cations that recover back to the initial compositions upon standing in the dark, leading these new organic-inorganic hybrids as pH-dependent photochromic materials. (C) 2013 Elsevier Inc. All rights reserved.

Melo, CI, Szczepanska A, Bogel-Lukasik E, da Ponte MN, Branco LC.  2016.  Hydrogenation of Carbon Dioxide to Methane by Ruthenium Nanoparticles in Ionic Liquid, 2016. Chemsuschem. 9(10):1081-1084. Abstract
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Leydet, Y, Parola AJ, Pina F.  2010.  Hydroxypyridinechromene and Pyridinechalcone: Two Coupled Photochromic Systems, 2010. Chemistry-a European Journal. 16:545-555. Abstract

Substitution of the phenyl group in 2-hydroxychalcones by a 4-pyridine unit dramatically changes the network of chemical reactions of this compound: trans-chalcone-type (Ct), cis-chalcone-type (Cc), and a hemiketal (hydroxy-4-pyridinechromene) (B) and their protonated forms are formed, but the presence of a flavylium-type cation could not be detected even at very acidic pH Values. Moreover, whereas in 2-phenyl-2-benzopyrylium compounds B and Cc are generally elusive species whose kinetic processes in aqueous solutions occur oil the sub-second time-scale, in the present compound these species equilibrate on a timescale four orders of magnitude lower. Complete characterization of the equilibrium and kinetics of the reaction network could thus be achieved by (1)H NMR spectroscopy and UV/Vis spectrophotometry. ne network of chemical reactions exhibits cis-trans photoisomerization, as well as photochromism between the hemiketal and the chalcone-type species. The irradiation of Ct in MeOH/ H(2)O (1:1) at 365 nm produces B almost quantitatively through two Consecutive photochemical reactions: Ct -> Cc photoisomerization followed by Cc -> B photo ring Closure with a global quantum yield of 0.02. On the other hand, irradiation of B at 254 nm leads to it photostationary state composed by 80% Ct and 20%, B. with a quantum yield of 0.21.

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Melo, MJ, Sousa M, Parola AJ, de Melo JSS, Catarino F, Marcalo J, Pina F.  2007.  Identification of 7,4 '-dihydroxy-5-methoxyflavylium in "Dragon's blood": To be or not to be an anthocyanin, 2007. Chemistry-a European Journal. 13:1417-1422. Abstract

The compound 7,4'-dihydroxy-5-methoxyflavylium (dracoflavylium) was identified as the major red colorant in samples of the resin "dragon's blood", extracted from the tree Dracaena draco. The complex network of reversible chemical reactions that dracoflavylium undergoes in aqueous solution is fully described; for the first time, all the equilibrium constants that enable a complete characterisation of the system have been obtained (K'(a)=1.6 x 10(-4), K-a1 = 1.0 x 10(-4), K-a2 = 3.2 x 10(-8), K-Ct1 = 1.0 x 10(-7), K-Ct2 = 1.3 x 10(-10)). It is concluded that the red colour is due to a stable quinoid base, A, which is the major species at pH 4-7. It is further shown that this compound does not fit the commonly accepted definitions of anthocyanidin nor 3-deoxyanthocyanidin. Similarly to synthetic flavylium salts, the natural compound 7,4'-dihydroxy-5-methoxyflavylium gives rise to several species (multistate system) reversibly interconverted by external stimuli, such as pH.